Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000504

Physical Location & Seq

Genomic Coordinates Reverse (-)

5154537 .. 5155564

Gene Structure 1028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCAATGTCTGGAACATACGTGGCGGAGGTACCGCTTAAGGGATCGGCGGAGAAACACTACAAGAAGTGGAGGAACGAAAACCACGTCTTCCAGGATGCCGTCGGCCACCACATCCAAGGTTGCACTATGCATGACGGTGACTGGGACTCCCACGGCTCCATCAGATCATGGAATATCACATGCGATGGAAAGCCGGAAGTCTTCAAGGAGAAGAGAGAGATAGACGACGAAAAGATGGCGTTGACGTTGAAAGGGCTAGAGGGTCAAGCGATGGAGAAGTACAAGAAGTATGAGGTTATCTACCAGTTCATTCCCAAGTCGAAGGAAGGCTGCGTCTGCAAAATCACTCTCATATGGGAAAAGCGCAACGAAAACTCCCCCGAACCCATCAACTACATGAAGTTTGTCAAGAGCTTAGTTGCTGACATGGACGACCACGTCCTCAATGGCCAGAACAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010228 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0080184

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

155

Amino Acids

17.88

Weight (kDa)

6.65

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	2 - 46	3.7e-15	Pathogenesis-related protein Bet v 1 family
Bet_v_1	PF00407	47 - 134	5.3e-36	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca	FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica	MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica	Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis	pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis	RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata	RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora	Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii	Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa	Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha	Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana	Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	440
Acc65I	GGTACC	1 cut(s)	31
AccB1I	GGYRCC	1 cut(s)	31
AciI	CCGC	3 cut(s)	26, 35, 50
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	2 cut(s)	106, 451
AfaI	GTAC	2 cut(s)	33, 284
AfiI	CCNNNNNNNGG	1 cut(s)	41
AflII	CTTAAG	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	208, 253
AjiI	CACGTC	2 cut(s)	88, 442
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	2 cut(s)	417, 464
AluI	AGCT	2 cut(s)	417, 464
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	2 cut(s)	106, 451
ApeKI	GCWGC	1 cut(s)	333
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
Asp718I	GGTACC	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	369
AsuHPI	GGTGA	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	453
BanI	GGYRCC	1 cut(s)	31
BbsI	GAAGAC	2 cut(s)	82, 196
BbvI	GCAGC	1 cut(s)	320
BccI	CCATC	5 cut(s)	170, 182, 232, 268, 398
BceAI	ACGGC	2 cut(s)	86, 172
BciT130I	CCWGG	1 cut(s)	95
BfaI	CTAG	1 cut(s)	260
BfrI	CTTAAG	1 cut(s)	38
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	95
BmgBI	CACGTC	2 cut(s)	88, 442
BmiI	GGNNCC	2 cut(s)	33, 160
BmrFI	CCNGG	1 cut(s)	95
BmrI	ACTGGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	154
BpiI	GAAGAC	2 cut(s)	82, 196
BsaAI	YACGTR	1 cut(s)	22
BsaJI	CCNNGG	2 cut(s)	118, 154
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 362, 392
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	149, 307
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	2 cut(s)	118, 154
BseGI	GGATG	2 cut(s)	103, 114
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	2 cut(s)	149, 307
BseXI	GCAGC	1 cut(s)	320
BshFI	GGCC	2 cut(s)	108, 453
BshNI	GGYRCC	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	2 cut(s)	108, 453
Bsp143I	GATC	2 cut(s)	44, 167
BspACI	CCGC	3 cut(s)	26, 35, 50
BspANI	GGCC	2 cut(s)	108, 453
BspLI	GGNNCC	2 cut(s)	33, 160
BspPI	GGATC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	31
BspTI	CTTAAG	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	149, 307
BssECI	CCNNGG	2 cut(s)	118, 154
BssMI	GATC	2 cut(s)	44, 167
BssT1I	CCWWGG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	209
BstAFI	CTTAAG	1 cut(s)	38
BstBAI	YACGTR	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	418
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	2 cut(s)	103, 114
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	2 cut(s)	47, 170
BstMBI	GATC	2 cut(s)	44, 167
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	320
BstV2I	GAAGAC	2 cut(s)	82, 196
BsuRI	GGCC	2 cut(s)	108, 453
BtgI	CCRYGG	1 cut(s)	154
BtgZI	GCGATG	2 cut(s)	201, 287
BtrI	CACGTC	2 cut(s)	88, 442
BtsCI	GGATG	2 cut(s)	103, 114
CfoI	GCGC	1 cut(s)	369
CseI	GACGC	1 cut(s)	325
Csp6I	GTAC	2 cut(s)	32, 283
CviAII	CATG	5 cut(s)	134, 171, 183, 400, 430
CviJI	RGCY	8 cut(s)	108, 159, 196, 259, 333, 417, 453, 464
CviKI_1	RGCY	8 cut(s)	108, 159, 196, 259, 333, 417, 453, 464
CviQI	GTAC	2 cut(s)	32, 283
DdeI	CTNAG	1 cut(s)	418
DpnI	GATC	2 cut(s)	46, 169
DpnII	GATC	2 cut(s)	44, 167
DrdI	GACNNNNNNGTC	1 cut(s)	440
DseDI	GACNNNNNNGTC	1 cut(s)	440
EaeI	YGGCCR	2 cut(s)	106, 451
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	2 cut(s)	41, 65
Eco130I	CCWWGG	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	118
EcoT22I	ATGCAT	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	5 cut(s)	137, 174, 186, 403, 433
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	5 cut(s)	133, 170, 182, 399, 429
FauNDI	CATATG	1 cut(s)	356
Fnu4HI	GCNGC	1 cut(s)	334
FokI	GGATG	2 cut(s)	101, 110
Fsp4HI	GCNGC	1 cut(s)	334
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	1 cut(s)	334
HaeIII	GGCC	2 cut(s)	108, 453
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	1 cut(s)	325
HhaI	GCGC	1 cut(s)	369
Hin1II	CATG	5 cut(s)	137, 174, 186, 403, 433
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HindIII	AAGCTT	1 cut(s)	462
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	1 cut(s)	167
Hpy188III	TCNNGA	2 cut(s)	12, 412
Hpy8I	GTNNAC	1 cut(s)	246
Hpy99I	CGWCG	2 cut(s)	107, 233
HpyAV	CCTTC	2 cut(s)	319, 323
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	4 cut(s)	21, 87, 248, 441
HpyCH4V	TGCA	3 cut(s)	126, 133, 342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpyF3I	CTNAG	1 cut(s)	418
HpySE526I	ACGT	4 cut(s)	21, 87, 248, 441
Hsp92II	CATG	5 cut(s)	137, 174, 186, 403, 433
HspAI	GCGC	1 cut(s)	367
KpnI	GGTACC	1 cut(s)	35
Kzo9I	GATC	2 cut(s)	44, 167
LmnI	GCTCC	1 cut(s)	164
LpnPI	CCDG	5 cut(s)	80, 107, 130, 210, 320
Lsp1109I	GCAGC	1 cut(s)	320
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	4 cut(s)	21, 87, 248, 441
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	2 cut(s)	46, 169
MboI	GATC	2 cut(s)	44, 167
MboII	GAAGA	3 cut(s)	82, 196, 226
MlsI	TGGCCA	1 cut(s)	453
MluNI	TGGCCA	1 cut(s)	453
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	5 cut(s)	22, 66, 256, 289, 455
Mox20I	TGGCCA	1 cut(s)	453
Mph1103I	ATGCAT	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	453
MseI	TTAA	1 cut(s)	39
MslI	CAYNNNNRTG	1 cut(s)	138
Msp20I	TGGCCA	1 cut(s)	453
MspCI	CTTAAG	1 cut(s)	38
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	339
NdeI	CATATG	1 cut(s)	356
NdeII	GATC	2 cut(s)	44, 167
NlaIII	CATG	5 cut(s)	137, 174, 186, 403, 433
NlaIV	GGNNCC	2 cut(s)	33, 160
NmuCI	GTSAC	1 cut(s)	140
NsiI	ATGCAT	1 cut(s)	135
NspI	RCATGY	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PflFI	GACNNNGTC	1 cut(s)	440
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	335
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Ppu21I	YACGTR	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	33, 160
PsyI	GACNNNGTC	1 cut(s)	440
RsaI	GTAC	2 cut(s)	33, 284
RsaNI	GTAC	2 cut(s)	32, 283
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	2 cut(s)	44, 167
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	95
SetI	ASST	9 cut(s)	24, 33, 90, 124, 251, 300, 419, 444, 466
SfaNI	GCATC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
SsiI	CCGC	3 cut(s)	26, 35, 50
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	93
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	4 cut(s)	24, 90, 251, 444
TaqI	TCGA	1 cut(s)	323
TatI	WGTACW	1 cut(s)	282
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	1 cut(s)	333
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	301, 416
Tth111I	GACNNNGTC	1 cut(s)	440
Vha464I	CTTAAG	1 cut(s)	38
XceI	RCATGY	1 cut(s)	186
XcmI	CCANNNNNNNNNTGG	1 cut(s)	446
XspI	CTAG	1 cut(s)	260
Zsp2I	ATGCAT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.