pycom16g02120

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000504
Physical Location & Seq
Reverse (-)
1333575 .. 1335119
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g02120.1

Sequence Viewer

Length: 474 bp
ATGGCAGTGAGTGGAGCTGGTGCTTGCAAGCTGACTGTGCAGGCTGAGGTAGAGATCAAAGCCAACGCTGATAAGTTGTACAAAGTCATCAGCAACCAGCACCACGACGTCCCCAAAGCAGCCTCTGATAAAATACACGATGTTGCAGTACATGAAGGTGATTGGGAAACGTCTGGCTCTGTCAAGCTCTGGAAATACACCCTAGATGGAAATGTCGAGACTTTCAAGGAAAAGGTGGAAATAGATGAAGCAAACAAGTGGGTGAGTCTTACAGCTCTGGAAGGATCACATGTGCTGGACAATTACAAAAGCTACAAGATCATTTTCCAGGTCACTCCAAAGAGTGAAGGAGGTTCTGTGAAAATTACTTTAGAATATGAAAAACTCAACGAGATCGATCCGCCTCCACAGAAATACCTCAGCTTTATGGTCAATGTCATTAAAGATATTGATGCACATCTTCTCAAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

158

Amino Acids

17.54

Weight (kDa)

5.52

Isoelectric Point (pI)

14.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 11 - 157 1.6e-52 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 111
AciI CCGC 1 cut(s) 401
AclWI GGATC 2 cut(s) 292, 392
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 2 cut(s) 80, 150
AflIII ACRYGT 1 cut(s) 289
AgsI TTSAA 1 cut(s) 226
AjnI CCWGG 1 cut(s) 327
AluBI AGCT 6 cut(s) 17, 31, 187, 275, 312, 423
AluI AGCT 6 cut(s) 17, 31, 187, 275, 312, 423
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 2 cut(s) 292, 392
AlwNI CAGNNNCTG 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 170, 274
BbvCI CCTCAGC 2 cut(s) 45, 419
BbvI GCAGC 1 cut(s) 131
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 329
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 1 cut(s) 203
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 329
BmrFI CCNGG 1 cut(s) 329
BmsI GCATC 1 cut(s) 442
Bpu10I CCTNAGC 2 cut(s) 45, 419
BpuEI CTTGAG 1 cut(s) 449
Bsa29I ATCGAT 1 cut(s) 396
BsaBI GATNNNNATC 1 cut(s) 456
BsaHI GRCGYC 1 cut(s) 108
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 1 cut(s) 329
BseCI ATCGAT 1 cut(s) 396
BseJI GATNNNNATC 1 cut(s) 456
BseMII CTCAG 2 cut(s) 36, 433
BseXI GCAGC 1 cut(s) 131
BsgI GTGCAG 1 cut(s) 59
BshVI ATCGAT 1 cut(s) 396
BslFI GGGAC 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 95
Bsp1407I TGTACA 1 cut(s) 78
Bsp143I GATC 5 cut(s) 54, 284, 318, 393, 397
BspACI CCGC 1 cut(s) 401
BspCNI CTCAG 2 cut(s) 37, 432
BspDI ATCGAT 1 cut(s) 396
BspPI GGATC 2 cut(s) 292, 392
BsrGI TGTACA 1 cut(s) 78
BssMI GATC 5 cut(s) 54, 284, 318, 393, 397
BssNI GRCGYC 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 1 cut(s) 37
BstACI GRCGYC 1 cut(s) 108
BstAUI TGTACA 1 cut(s) 78
BstC8I GCNNGC 3 cut(s) 25, 29, 42
BstDEI CTNAG 2 cut(s) 45, 419
BstKTI GATC 5 cut(s) 57, 287, 321, 396, 400
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 5 cut(s) 54, 284, 318, 393, 397
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 1 cut(s) 329
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 327
BstV1I GCAGC 1 cut(s) 131
Bsu15I ATCGAT 1 cut(s) 396
BsuTUI ATCGAT 1 cut(s) 396
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 3 cut(s) 25, 29, 42
CaiI CAGNNNCTG 1 cut(s) 125
ClaI ATCGAT 1 cut(s) 396
Csp6I GTAC 2 cut(s) 79, 149
CviAII CATG 2 cut(s) 152, 290
CviQI GTAC 2 cut(s) 79, 149
DdeI CTNAG 2 cut(s) 45, 419
DpnI GATC 5 cut(s) 56, 286, 320, 395, 399
DpnII GATC 5 cut(s) 54, 284, 318, 393, 397
EciI GGCGGA 1 cut(s) 390
EcoRII CCWGG 1 cut(s) 327
FaeI CATG 2 cut(s) 155, 293
FaiI YATR 4 cut(s) 153, 291, 378, 428
FaqI GGGAC 1 cut(s) 95
FatI CATG 2 cut(s) 151, 289
Fnu4HI GCNGC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 1 cut(s) 203
GluI GCNGC 1 cut(s) 120
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 2 cut(s) 155, 293
HinfI GANTC 1 cut(s) 265
HphI GGTGA 2 cut(s) 170, 274
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 3 cut(s) 190, 217, 278
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 3 cut(s) 149, 275, 341
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 2 cut(s) 108, 170
HpyCH4V TGCA 4 cut(s) 27, 40, 146, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 2 cut(s) 45, 419
HpySE526I ACGT 2 cut(s) 108, 170
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 2 cut(s) 155, 293
Kzo9I GATC 5 cut(s) 54, 284, 318, 393, 397
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 9 cut(s) 3, 26, 110, 159, 175, 263, 281, 314, 341
Lsp1109I GCAGC 1 cut(s) 131
LweI GCATC 1 cut(s) 442
MaeI CTAG 1 cut(s) 203
MaeII ACGT 2 cut(s) 108, 170
MaeIII GTNAC 1 cut(s) 331
MalI GATC 5 cut(s) 56, 286, 320, 395, 399
MboI GATC 5 cut(s) 54, 284, 318, 393, 397
MboII GAAGA 1 cut(s) 452
MluCI AATT 2 cut(s) 301, 363
MlyI GAGTC 1 cut(s) 274
MnlI CCTC 5 cut(s) 40, 133, 344, 414, 428
MseI TTAA 1 cut(s) 441
MslI CAYNNNNRTG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 329
MvaI CCWGG 1 cut(s) 329
MwoI GCNNNNNNNGC 1 cut(s) 37
NdeII GATC 5 cut(s) 54, 284, 318, 393, 397
NlaIII CATG 2 cut(s) 155, 293
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 1 cut(s) 293
PciI ACATGT 1 cut(s) 289
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
PscI ACATGT 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 327
PspGI CCWGG 1 cut(s) 327
PstNI CAGNNNCTG 1 cut(s) 125
RsaI GTAC 2 cut(s) 80, 150
RsaNI GTAC 2 cut(s) 79, 149
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 5 cut(s) 54, 284, 318, 393, 397
SchI GAGTC 1 cut(s) 274
ScrFI CCNGG 1 cut(s) 329
SfaNI GCATC 1 cut(s) 442
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 2 cut(s) 301, 363
SsiI CCGC 1 cut(s) 401
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 327
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 2 cut(s) 111, 173
TaqI TCGA 2 cut(s) 216, 396
TasI AATT 2 cut(s) 301, 363
TatI WGTACW 2 cut(s) 78, 148
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 3 cut(s) 168, 261, 393
TspRI CASTG 1 cut(s) 12
XceI RCATGY 1 cut(s) 293
XspI CTAG 1 cut(s) 203
ZraI GACGTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.