Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0000504

Physical Location & Seq

Genomic Coordinates Forward (+)

1488140 .. 1489090

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCTCTGCGCAAGGTTGAGACTGAGATTGAAATTAAGGCACCCGCTGAGAAGTTCTACAATATCTTCAAGAGACAGGCTCACCACGTCCCAAACATTTCTTCTGGCAGTATCCAGGGAGTTCAGGTGCATGCAGGAGATTGGGAAACTCATGGCTCTATTAAAAGTTGGAATTACAGTGTAGGGGACGAAGTTGGAGTATTCAAGGAAAAAGTGGAGTTTAACGACGAGAACAAATCCATAACACTGAATGGTTTGGAAGGAGATGTTTTCCAGTATTACAAGAGCTTCAAGCCAGTCTATCAATTCACTCAAAAGGATGAAGGCAACATTGCGAAATTGTCGATTGAATATGAGAAACTGACTGAGGATGTTGTAGCTCCGGACAAATATGTCGGTTTGATGGTTAACATCGTCAAGGATCTTGATGCTCACTTTATCAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010228 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0080184

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

150

Amino Acids

16.96

Weight (kDa)

5.54

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca	FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica	MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica	Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis	pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis	RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata	RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora	Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii	Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa	Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha	Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana	Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	392
Acc16I	TGCGCA	1 cut(s)	11
AccB1I	GGYRCC	1 cut(s)	40
AccIII	TCCGGA	1 cut(s)	382
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	1 cut(s)	429
AgsI	TTSAA	5 cut(s)	32, 70, 205, 292, 350
AjiI	CACGTC	1 cut(s)	88
AjnI	CCWGG	1 cut(s)	114
AjuI	GAANNNNNNNTTGG	2 cut(s)	85, 117
AluBI	AGCT	2 cut(s)	288, 380
AluI	AGCT	2 cut(s)	288, 380
Alw26I	GTCTC	2 cut(s)	14, 67
AlwI	GGATC	1 cut(s)	429
Aor13HI	TCCGGA	1 cut(s)	382
AspLEI	GCGC	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	40
BccI	CCATC	1 cut(s)	397
BciT130I	CCWGG	1 cut(s)	116
BciVI	GTATCC	1 cut(s)	122
BcoDI	GTCTC	2 cut(s)	14, 67
BfuI	GTATCC	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	116
BmgBI	CACGTC	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	1 cut(s)	418
BplI	GAGNNNNNCTC	2 cut(s)	64, 96
BsaJI	CCNNGG	1 cut(s)	115
BsaWI	WCCGGW	1 cut(s)	382
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bse1I	ACTGG	2 cut(s)	274, 296
Bse3DI	GCAATG	1 cut(s)	330
BseAI	TCCGGA	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	2 cut(s)	325, 376
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	3 cut(s)	15, 39, 357
BseNI	ACTGG	2 cut(s)	274, 296
BshNI	GGYRCC	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	383
BslFI	GGGAC	2 cut(s)	74, 200
BsmAI	GTCTC	2 cut(s)	14, 67
BsmFI	GGGAC	2 cut(s)	74, 200
Bsp13I	TCCGGA	1 cut(s)	382
Bsp143I	GATC	1 cut(s)	421
BspACI	CCGC	1 cut(s)	45
BspCNI	CTCAG	3 cut(s)	16, 40, 358
BspEI	TCCGGA	1 cut(s)	382
BspLI	GGNNCC	1 cut(s)	42
BspPI	GGATC	1 cut(s)	429
BspT107I	GGYRCC	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	330
BsrI	ACTGG	2 cut(s)	274, 296
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	1 cut(s)	421
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	3 cut(s)	24, 48, 366
BstF5I	GGATG	2 cut(s)	325, 376
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	1 cut(s)	424
BstMAI	GTCTC	2 cut(s)	14, 67
BstMBI	GATC	1 cut(s)	421
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BsuI	GTATCC	1 cut(s)	122
BtrI	CACGTC	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	325, 376
BtsIMutI	CAGTG	2 cut(s)	184, 245
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	1 cut(s)	12
CviAII	CATG	3 cut(s)	131, 152, 447
CviJI	RGCY	6 cut(s)	5, 80, 156, 288, 295, 380
CviKI_1	RGCY	6 cut(s)	5, 80, 156, 288, 295, 380
DdeI	CTNAG	3 cut(s)	24, 48, 366
DpnI	GATC	1 cut(s)	423
DpnII	GATC	1 cut(s)	421
DrdI	GACNNNNNNGTC	1 cut(s)	392
DseDI	GACNNNNNNGTC	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	114
FaeI	CATG	3 cut(s)	134, 155, 450
FaiI	YATR	6 cut(s)	132, 153, 242, 354, 393, 448
FaqI	GGGAC	2 cut(s)	74, 200
FatI	CATG	3 cut(s)	130, 151, 446
FauI	CCCGC	1 cut(s)	52
FokI	GGATG	2 cut(s)	332, 383
FspI	TGCGCA	1 cut(s)	11
GlaI	GCGC	1 cut(s)	11
HapII	CCGG	1 cut(s)	383
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	3 cut(s)	134, 155, 450
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HpaI	GTTAAC	1 cut(s)	409
HpaII	CCGG	1 cut(s)	383
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188III	TCNNGA	3 cut(s)	70, 383, 425
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	254, 317
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	2 cut(s)	130, 134
HpyF3I	CTNAG	3 cut(s)	24, 48, 366
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	3 cut(s)	134, 155, 450
HspAI	GCGC	1 cut(s)	10
Kpn2I	TCCGGA	1 cut(s)	382
KspAI	GTTAAC	1 cut(s)	409
Kzo9I	GATC	1 cut(s)	421
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	9 cut(s)	62, 90, 101, 110, 120, 128, 287, 309, 396
LweI	GCATC	1 cut(s)	418
MaeII	ACGT	1 cut(s)	87
MalI	GATC	1 cut(s)	423
MboI	GATC	1 cut(s)	421
MboII	GAAGA	2 cut(s)	58, 93
MflI	RGATCY	1 cut(s)	421
MluCI	AATT	4 cut(s)	33, 172, 305, 338
MmeI	TCCRAC	2 cut(s)	149, 175
MnlI	CCTC	1 cut(s)	361
MroI	TCCGGA	1 cut(s)	382
MseI	TTAA	4 cut(s)	36, 162, 222, 408
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	1 cut(s)	383
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
NdeII	GATC	1 cut(s)	421
NlaIII	CATG	3 cut(s)	134, 155, 450
NlaIV	GGNNCC	1 cut(s)	42
NsbI	TGCGCA	1 cut(s)	11
NspI	RCATGY	1 cut(s)	134
PaeI	GCATGC	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	421
SaqAI	TTAA	4 cut(s)	36, 162, 222, 408
Sau3AI	GATC	1 cut(s)	421
ScrFI	CCNGG	1 cut(s)	116
SetI	ASST	5 cut(s)	18, 90, 129, 290, 382
SfaNI	GCATC	1 cut(s)	418
SphI	GCATGC	1 cut(s)	134
Sse9I	AATT	4 cut(s)	33, 172, 305, 338
SsiI	CCGC	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	344
TasI	AATT	4 cut(s)	33, 172, 305, 338
Tru1I	TTAA	4 cut(s)	36, 162, 222, 408
Tru9I	TTAA	4 cut(s)	36, 162, 222, 408
TscAI	CASTG	2 cut(s)	184, 252
TspDTI	ATGAA	1 cut(s)	336
TspRI	CASTG	2 cut(s)	184, 252
XceI	RCATGY	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.