Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000504

Physical Location & Seq

Genomic Coordinates Reverse (-)

12336134 .. 12337599

Gene Structure 1466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G23680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCGACGTCGGGAACGTACGTGACGGAAGTTCCGCTAAAAGGATCGGCCGAGAAATACTACAAGAGGTGGAAGAACGAGAACCATGTCTTCCCTGATGCTATCGGCCACCACATCCAAAATGTTACCGTTCACGAAGGCGAACATGACTCTCACGGGTCTATCAGGAGTTGGAACTACACATGGGATGGAAAGGAGGAGGTGTTCAAGGAGAGAAGAGAGATAGACGATGAGACCAAAACGTTGACGTTAAGAGGACTTGAGGGTCACGTGATGGAGCAGCTCAAAGTGTACGACGTCGTCTACCAATTCATTCCCAAATCTGAGGATACCTGCATCGGCAAAATCACTTTAATATGGGAGAAGCGCAACGATGATTCCCCAGAACCAAGCGGGTACATGAAATTCGTCAAGAGCTTGGTTGCTGACATGGGAAACCACGTTAGCAAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010228 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0080184

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

151

Amino Acids

17.47

Weight (kDa)

5.89

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	2 - 150	8.4e-68	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca	FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica	MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica	Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis	pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis	RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata	RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora	Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii	Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa	Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha	Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana	Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	264
AatII	GACGTC	2 cut(s)	11, 300
Acc36I	ACCTGC	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	303
AciI	CCGC	2 cut(s)	35, 393
AclI	AACGTT	1 cut(s)	242
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	2 cut(s)	48, 106
AcsI	RAATTY	1 cut(s)	404
AcvI	CACGTG	1 cut(s)	271
AcyI	GRCGYC	2 cut(s)	8, 297
AfaI	GTAC	3 cut(s)	20, 293, 398
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	208
AloI	GAACNNNNNNTCC	2 cut(s)	188, 220
AluBI	AGCT	2 cut(s)	283, 417
AluI	AGCT	2 cut(s)	283, 417
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	2 cut(s)	48, 106
ApeKI	GCWGC	1 cut(s)	280
ApoI	RAATTY	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	369
BbrPI	CACGTG	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	2 cut(s)	182, 268
BciVI	GTATCC	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	341
BfuI	GTATCC	1 cut(s)	322
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
BmsI	GCATC	2 cut(s)	88, 345
BpiI	GAAGAC	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	281
BsaAI	YACGTR	2 cut(s)	22, 271
BsaHI	GRCGYC	2 cut(s)	8, 297
BsaI	GGTCTC	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
BseGI	GGATG	2 cut(s)	114, 193
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	315
BseRI	GAGGAG	1 cut(s)	212
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	292
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	50, 108
BsiEI	CGRYCG	1 cut(s)	51
BsiWI	CGTACG	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	50, 108
Bso31I	GGTCTC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	44
BspACI	CCGC	2 cut(s)	35, 393
BspANI	GGCC	2 cut(s)	50, 108
BspCNI	CTCAG	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	341
BspPI	GGATC	1 cut(s)	52
BspTNI	GGTCTC	1 cut(s)	227
BssMI	GATC	1 cut(s)	44
BssNI	GRCGYC	2 cut(s)	8, 297
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	211
BstACI	GRCGYC	2 cut(s)	8, 297
BstBAI	YACGTR	2 cut(s)	22, 271
BstDEI	CTNAG	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	114, 193
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	1 cut(s)	47
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	1 cut(s)	44
BstMCI	CGRYCG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	82
BstZI	CGGCCG	1 cut(s)	48
BsuI	GTATCC	1 cut(s)	322
BsuRI	GGCC	2 cut(s)	50, 108
BtsCI	GGATG	2 cut(s)	114, 193
BveI	ACCTGC	1 cut(s)	341
CfoI	GCGC	1 cut(s)	369
Csp6I	GTAC	3 cut(s)	19, 292, 397
CviAII	CATG	5 cut(s)	86, 146, 183, 400, 430
CviJI	RGCY	4 cut(s)	50, 108, 283, 417
CviKI_1	RGCY	4 cut(s)	50, 108, 283, 417
CviQI	GTAC	3 cut(s)	19, 292, 397
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
DrdI	GACNNNNNNGTC	1 cut(s)	264
DseDI	GACNNNNNNGTC	1 cut(s)	264
EaeI	YGGCCR	2 cut(s)	48, 106
EagI	CGGCCG	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
EclXI	CGGCCG	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	227
Eco52I	CGGCCG	1 cut(s)	48
Eco72I	CACGTG	1 cut(s)	271
FaeI	CATG	5 cut(s)	89, 149, 186, 403, 433
FaiI	YATR	6 cut(s)	87, 147, 184, 358, 401, 431
FatI	CATG	5 cut(s)	85, 145, 182, 399, 429
FauI	CCCGC	1 cut(s)	386
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	2 cut(s)	101, 200
Fsp4HI	GCNGC	1 cut(s)	281
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	1 cut(s)	281
HaeIII	GGCC	2 cut(s)	50, 108
HhaI	GCGC	1 cut(s)	369
Hin1I	GRCGYC	2 cut(s)	8, 297
Hin1II	CATG	5 cut(s)	89, 149, 186, 403, 433
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HinfI	GANTC	2 cut(s)	149, 377
Hpy166II	GTNNAC	4 cut(s)	133, 246, 292, 304
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	4 cut(s)	12, 134, 166, 412
Hpy8I	GTNNAC	4 cut(s)	133, 246, 292, 304
Hpy99I	CGWCG	4 cut(s)	10, 13, 299, 302
HpyAV	CCTTC	1 cut(s)	131
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	8 cut(s)	8, 17, 21, 242, 248, 270, 297, 441
HpyCH4V	TGCA	1 cut(s)	336
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	8 cut(s)	8, 17, 21, 242, 248, 270, 297, 441
Hsp92I	GRCGYC	2 cut(s)	8, 297
Hsp92II	CATG	5 cut(s)	89, 149, 186, 403, 433
HspAI	GCGC	1 cut(s)	367
Kzo9I	GATC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	4 cut(s)	108, 151, 346, 396
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	2 cut(s)	88, 345
MaeII	ACGT	8 cut(s)	8, 17, 21, 242, 248, 270, 297, 441
MaeIII	GTNAC	3 cut(s)	22, 124, 266
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MboII	GAAGA	3 cut(s)	82, 85, 228
MluCI	AATT	2 cut(s)	308, 404
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	6 cut(s)	60, 190, 193, 248, 256, 319
MseI	TTAA	3 cut(s)	251, 353, 454
NdeII	GATC	1 cut(s)	44
NlaIII	CATG	5 cut(s)	89, 149, 186, 403, 433
NmeAIII	GCCGAG	1 cut(s)	76
NmuCI	GTSAC	2 cut(s)	22, 266
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	377
Pfl23II	CGTACG	1 cut(s)	18
PflFI	GACNNNGTC	1 cut(s)	299
PkrI	GCNGC	1 cut(s)	282
PleI	GAGTC	1 cut(s)	143
PmaCI	CACGTG	1 cut(s)	271
PmlI	CACGTG	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	143
Ppu21I	YACGTR	2 cut(s)	22, 271
Psp1406I	AACGTT	1 cut(s)	242
PspCI	CACGTG	1 cut(s)	271
PspLI	CGTACG	1 cut(s)	18
PsyI	GACNNNGTC	1 cut(s)	299
RsaI	GTAC	3 cut(s)	20, 293, 398
RsaNI	GTAC	3 cut(s)	19, 292, 397
SaqAI	TTAA	3 cut(s)	251, 353, 454
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	143
SfaNI	GCATC	2 cut(s)	88, 345
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	2 cut(s)	308, 404
SsiI	CCGC	2 cut(s)	35, 393
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	8 cut(s)	11, 20, 24, 245, 251, 273, 300, 444
TasI	AATT	2 cut(s)	308, 404
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	3 cut(s)	251, 353, 454
Tru9I	TTAA	3 cut(s)	251, 353, 454
TseFI	GTSAC	2 cut(s)	22, 266
TseI	GCWGC	1 cut(s)	280
Tsp45I	GTSAC	2 cut(s)	22, 266
TspDTI	ATGAA	2 cut(s)	301, 416
TspGWI	ACGGA	1 cut(s)	41
Tth111I	GACNNNGTC	1 cut(s)	299
XapI	RAATTY	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	303
ZraI	GACGTC	2 cut(s)	9, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.