RLG00000006078

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000504
Physical Location & Seq
Reverse (-)
4160875 .. 4161408
534 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006078

Sequence Viewer

Length: 435 bp
ATGGCTTTGAGTAGCATTACTACCGGCAACCTGAAGACTCTGGAGGCAGTGGTAGAGATCAAATCCTCAGCTGATAAATTGGTCGCGATCATAAGCAACGAGCACCACAATGTTCCCAAAGCCTCATCTGATAATGTACACGACGTTGCAGTACATGAAGGTGACTGGAAAACTTCTGGTTCCATCAAGCTCTCTAAATATACCATAGCAAATAAGAGGATGAGTCTCACAGCATTGGAGGCACATGTGCTGGAGCAATACAGAAGCTATAAGATTATCTTTCAGGTCACTCCAAAGAGTGATGAAGGAGGTAATCAGGTCAAAATTACTCTGGAATATGAAAAGCTCAATGAGAGTGACCAGCCTCCGCATAAGTACCTCCACTTTCTAGTCAATGTCATTAAGGATATTGATGCACATCTTATTGCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

145

Amino Acids

16.01

Weight (kDa)

6.43

Isoelectric Point (pI)

21.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 12 - 72 4.7e-14 Pathogenesis-related protein Bet v 1 family
Bet_v_1 PF00407 71 - 143 1e-18 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 86
AciI CCGC 1 cut(s) 368
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 3 cut(s) 138, 153, 377
AflIII ACRYGT 1 cut(s) 244
AluBI AGCT 4 cut(s) 71, 190, 267, 346
AluI AGCT 4 cut(s) 71, 190, 267, 346
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 1 cut(s) 389
BmiI GGNNCC 1 cut(s) 181
BmsI GCATC 1 cut(s) 403
BpiI GAAGAC 1 cut(s) 41
BpmI CTGGAG 2 cut(s) 62, 272
Bpu10I CCTNAGC 1 cut(s) 67
BsaBI GATNNNNATC 1 cut(s) 417
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 170
Bse8I GATNNNNATC 1 cut(s) 417
BseGI GGATG 1 cut(s) 225
BseJI GATNNNNATC 1 cut(s) 417
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 105
Bsp1407I TGTACA 1 cut(s) 136
Bsp143I GATC 2 cut(s) 57, 87
Bsp68I TCGCGA 1 cut(s) 86
BspACI CCGC 1 cut(s) 368
BspCNI CTCAG 1 cut(s) 80
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 23
BsrGI TGTACA 1 cut(s) 136
BsrI ACTGG 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 23
BssMI GATC 2 cut(s) 57, 87
BstAUI TGTACA 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 67
BstF5I GGATG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 86
BstKTI GATC 2 cut(s) 60, 90
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 2 cut(s) 57, 87
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 248
BstUI CGCG 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 41
BtsCI GGATG 1 cut(s) 225
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
BtuMI TCGCGA 1 cut(s) 86
Cfr10I RCCGGY 1 cut(s) 23
Csp6I GTAC 3 cut(s) 137, 152, 376
CviAII CATG 2 cut(s) 155, 245
CviJI RGCY 7 cut(s) 5, 71, 122, 190, 267, 346, 364
CviKI_1 RGCY 7 cut(s) 5, 71, 122, 190, 267, 346, 364
CviQI GTAC 3 cut(s) 137, 152, 376
DdeI CTNAG 1 cut(s) 67
DpnI GATC 2 cut(s) 59, 89
DpnII GATC 2 cut(s) 57, 87
Eco57I CTGAAG 1 cut(s) 53
FaeI CATG 2 cut(s) 158, 248
FaiI YATR 8 cut(s) 92, 156, 201, 206, 246, 270, 339, 372
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FatI CATG 2 cut(s) 154, 244
FokI GGATG 1 cut(s) 232
FspBI CTAG 1 cut(s) 389
GsuI CTGGAG 2 cut(s) 62, 272
HapII CCGG 1 cut(s) 24
Hin1II CATG 2 cut(s) 158, 248
HinfI GANTC 2 cut(s) 37, 223
HpaII CCGG 1 cut(s) 24
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 3 cut(s) 41, 85, 332
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 2 cut(s) 152, 299
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 2 cut(s) 149, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 67
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 2 cut(s) 158, 248
Kzo9I GATC 2 cut(s) 57, 87
LmnI GCTCC 1 cut(s) 253
LweI GCATC 1 cut(s) 403
MaeI CTAG 1 cut(s) 389
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 3 cut(s) 161, 286, 356
MalI GATC 2 cut(s) 59, 89
MboI GATC 2 cut(s) 57, 87
MboII GAAGA 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 2 cut(s) 77, 324
MlyI GAGTC 2 cut(s) 31, 232
MnlI CCTC 8 cut(s) 37, 76, 133, 210, 232, 302, 375, 389
MseI TTAA 2 cut(s) 402, 433
MslI CAYNNNNRTG 2 cut(s) 108, 159
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 24
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 2 cut(s) 57, 87
NlaIII CATG 2 cut(s) 158, 248
NlaIV GGNNCC 1 cut(s) 181
NmuCI GTSAC 3 cut(s) 161, 286, 356
NruI TCGCGA 1 cut(s) 86
NspI RCATGY 1 cut(s) 248
PciI ACATGT 1 cut(s) 244
PleI GAGTC 2 cut(s) 31, 231
PpsI GAGTC 2 cut(s) 31, 231
PscI ACATGT 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 71
RruI TCGCGA 1 cut(s) 86
RsaI GTAC 3 cut(s) 138, 153, 377
RsaNI GTAC 3 cut(s) 137, 152, 376
RseI CAYNNNNRTG 2 cut(s) 108, 159
SaqAI TTAA 2 cut(s) 402, 433
Sau3AI GATC 2 cut(s) 57, 87
SchI GAGTC 2 cut(s) 31, 232
SduI GDGCHC 1 cut(s) 105
SfaNI GCATC 1 cut(s) 403
SmiMI CAYNNNNRTG 2 cut(s) 108, 159
Sse9I AATT 2 cut(s) 77, 324
SsiI CCGC 1 cut(s) 368
SspMI CTAG 1 cut(s) 389
TaiI ACGT 1 cut(s) 147
TasI AATT 2 cut(s) 77, 324
TatI WGTACW 2 cut(s) 136, 151
Tru1I TTAA 2 cut(s) 402, 433
Tru9I TTAA 2 cut(s) 402, 433
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 3 cut(s) 161, 286, 356
Tsp45I GTSAC 3 cut(s) 161, 286, 356
TspDTI ATGAA 3 cut(s) 171, 318, 354
TspRI CASTG 1 cut(s) 54
XceI RCATGY 1 cut(s) 248
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.