Rh4DG393500

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000504
Physical Location & Seq
Forward (+)
60970134 .. 60971278
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG393500.1

Sequence Viewer

Length: 459 bp
ATGGCTCTTCAAGGTAAGGTGGAGGCTGAAATTGAAATCAAAGCACCTGCTGACAAGTTCTACAACATCTTCAAGAGTCAGGCTCACCACGTCCCAAACACTTCTCAAACTGGCACAATAACCGGAGTTGCGGTGCATGAAGGAGATTGGGAAACTGCGGGATCTATTAAGATTTGGAGTTATGCAATAGAGGGGGAAGAGGGAACATTCAAGGAGAAGGTGGAGTTAGACGAGGTGAACAAGGCCATAATTCTGAATGGGTTGGAAGGAGATGTGTTCCAGTATTACAAGAGCTTCAAGCCCGTCTATCAGTTCACTCAAAAGAATGAGGGCAGAAGCATTGCCAAAGTGTCCATTGAATATGAGAAATTGAGTGAGGAGGTTGCAGCTCCAGATAAGTACATTCGCTTGATGACTAACATCGTCAAGGATCTTGATGCCCACTTCATCAAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

152

Amino Acids

17.12

Weight (kDa)

5.27

Isoelectric Point (pI)

34.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 2 - 151 6.5e-49 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 55
Acc36I ACCTGC 1 cut(s) 55
AciI CCGC 2 cut(s) 131, 158
AclWI GGATC 2 cut(s) 169, 438
AfaI GTAC 1 cut(s) 401
AgsI TTSAA 6 cut(s) 11, 35, 73, 211, 298, 359
AjiI CACGTC 1 cut(s) 91
AluBI AGCT 2 cut(s) 294, 389
AluI AGCT 2 cut(s) 294, 389
AlwI GGATC 2 cut(s) 169, 438
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 386
AsuHPI GGTGA 2 cut(s) 77, 247
BbvI GCAGC 1 cut(s) 398
BfuAI ACCTGC 1 cut(s) 55
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
BmgBI CACGTC 1 cut(s) 91
BmsI GCATC 1 cut(s) 427
BplI GAGNNNNNCTC 2 cut(s) 67, 99
BpmI CTGGAG 1 cut(s) 375
BsaWI WCCGGW 1 cut(s) 122
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bse1I ACTGG 2 cut(s) 115, 280
Bse3DI GCAATG 1 cut(s) 339
BseMI GCAATG 1 cut(s) 339
BseNI ACTGG 2 cut(s) 115, 280
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 1 cut(s) 398
BshFI GGCC 1 cut(s) 245
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 1 cut(s) 245
Bsp143I GATC 2 cut(s) 161, 430
BspACI CCGC 2 cut(s) 131, 158
BspANI GGCC 1 cut(s) 245
BspMI ACCTGC 1 cut(s) 55
BspPI GGATC 2 cut(s) 169, 438
BspQI GCTCTTC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 339
BsrI ACTGG 2 cut(s) 115, 280
BssMI GATC 2 cut(s) 161, 430
Bst6I CTCTTC 2 cut(s) 12, 192
BstKTI GATC 2 cut(s) 164, 433
BstMBI GATC 2 cut(s) 161, 430
BstV1I GCAGC 1 cut(s) 398
BstX2I RGATCY 2 cut(s) 161, 430
BstYI RGATCY 2 cut(s) 161, 430
BsuRI GGCC 1 cut(s) 245
BtrI CACGTC 1 cut(s) 91
BveI ACCTGC 1 cut(s) 55
Csp6I GTAC 1 cut(s) 400
CviAII CATG 2 cut(s) 137, 456
CviJI RGCY 7 cut(s) 5, 26, 83, 245, 294, 301, 389
CviKI_1 RGCY 7 cut(s) 5, 26, 83, 245, 294, 301, 389
CviQI GTAC 1 cut(s) 400
DpnI GATC 2 cut(s) 163, 432
DpnII GATC 2 cut(s) 161, 430
Eam1104I CTCTTC 2 cut(s) 12, 192
EarI CTCTTC 2 cut(s) 12, 192
FaeI CATG 2 cut(s) 140, 459
FaiI YATR 5 cut(s) 138, 183, 248, 363, 457
FaqI GGGAC 1 cut(s) 77
FatI CATG 2 cut(s) 136, 455
FauI CCCGC 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 387
Fsp4HI GCNGC 1 cut(s) 387
GluI GCNGC 1 cut(s) 387
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 1 cut(s) 245
HapII CCGG 1 cut(s) 123
Hin1II CATG 2 cut(s) 140, 459
HinfI GANTC 1 cut(s) 76
HpaII CCGG 1 cut(s) 123
HphI GGTGA 2 cut(s) 77, 247
Hpy166II GTNNAC 2 cut(s) 238, 315
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 3 cut(s) 73, 392, 434
Hpy8I GTNNAC 2 cut(s) 238, 315
HpyAV CCTTC 3 cut(s) 134, 211, 260
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 3 cut(s) 136, 185, 386
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 2 cut(s) 140, 459
Kzo9I GATC 2 cut(s) 161, 430
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 6 cut(s) 60, 65, 96, 136, 293, 405
Lsp1109I GCAGC 1 cut(s) 398
LweI GCATC 1 cut(s) 427
MaeII ACGT 1 cut(s) 90
MalI GATC 2 cut(s) 163, 432
MboI GATC 2 cut(s) 161, 430
MboII GAAGA 2 cut(s) 61, 209
MflI RGATCY 2 cut(s) 161, 430
MluCI AATT 3 cut(s) 30, 249, 368
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 7 cut(s) 16, 184, 193, 226, 322, 370, 373
MseI TTAA 1 cut(s) 168
MspI CCGG 1 cut(s) 123
NdeII GATC 2 cut(s) 161, 430
NlaIII CATG 2 cut(s) 140, 459
PaqCI CACCTGC 1 cut(s) 55
PciSI GCTCTTC 1 cut(s) 12
PkrI GCNGC 1 cut(s) 388
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
PsuI RGATCY 2 cut(s) 161, 430
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 2 cut(s) 161, 430
SchI GAGTC 1 cut(s) 85
SetI ASST 9 cut(s) 16, 21, 49, 93, 222, 237, 296, 384, 391
SfaNI GCATC 1 cut(s) 427
Sse9I AATT 3 cut(s) 30, 249, 368
SsiI CCGC 2 cut(s) 131, 158
TaiI ACGT 1 cut(s) 93
TasI AATT 3 cut(s) 30, 249, 368
TatI WGTACW 1 cut(s) 399
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseI GCWGC 1 cut(s) 386
TspDTI ATGAA 2 cut(s) 153, 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.