Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000504

Physical Location & Seq

Genomic Coordinates Forward (+)

31155671 .. 31157327

Gene Structure 1657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G327700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGATGAAGGAGAAGCCAAGTTATACGTTGTTTAACATTCTGCCTTATCCATATCAAATTTCAAAACTGATAAGCATAAGCATGGCTCTGCACGGTTTTATTGGGACTCAAATAGAACTCAAGTCACCTGCTGATAAGTTCTACAAAATCTTCAAGGGCCAAGCCCACCTCATCCCAAATGTTTCTTCTGGCCATATCAAAGGCGTTCAGGTGCATGAAGGAGATTGGGAAACGCACGGCTCTGTTAAGATCTGGAATTATCATCTAGGGGACGAAGTTCGGACAATCAAGGAAAAGGTTGAGTACGACGACAAGAACATGGCGGCAACTCATATTGGATTGGACGGAGAAGTGTTCAAGTATTACAAGAGCTTTAAGGGCATCTATCAGTTCGCTCAAAAGGGTGATGTTTGCGTAGCTAGCCTGACGATTCACTATGAGAAACGGAATGCGGATGTTGAAGCTCCAGATAGATATGTTGGTCTCATGGTTACCCTCGTCAGGGATCTTGATGCTCACTTTGCCAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010228 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0080184

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

178

Amino Acids

20.17

Weight (kDa)

7.83

Isoelectric Point (pI)

22.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca	FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica	MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica	Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis	pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis	RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata	RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora	Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii	Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa	Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha	Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana	Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	136
AciI	CCGC	2 cut(s)	323, 452
AclWI	GGATC	1 cut(s)	513
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	57
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	2 cut(s)	501, 502
AgsI	TTSAA	4 cut(s)	63, 154, 358, 461
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AluBI	AGCT	3 cut(s)	372, 419, 464
AluI	AGCT	3 cut(s)	372, 419, 464
Alw26I	GTCTC	1 cut(s)	488
AlwI	GGATC	1 cut(s)	513
AoxI	GGCC	2 cut(s)	157, 190
ApoI	RAATTY	1 cut(s)	57
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	117, 416
AsuNHI	GCTAGC	1 cut(s)	419
BalI	TGGCCA	1 cut(s)	192
BceAI	ACGGC	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	488
BfaI	CTAG	2 cut(s)	266, 420
BfuAI	ACCTGC	1 cut(s)	136
BglII	AGATCT	1 cut(s)	249
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	157
BmsI	GCATC	2 cut(s)	390, 502
BmtI	GCTAGC	1 cut(s)	423
BpmI	CTGGAG	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	488
BsaJI	CCNNGG	1 cut(s)	525
Bsc4I	CCNNNNNNNGG	2 cut(s)	501, 502
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	2 cut(s)	171, 460
BseLI	CCNNNNNNNGG	2 cut(s)	501, 502
BsgI	GTGCAG	1 cut(s)	74
BshFI	GGCC	2 cut(s)	159, 192
BslFI	GGGAC	2 cut(s)	118, 284
BslI	CCNNNNNNNGG	2 cut(s)	501, 502
BsmAI	GTCTC	1 cut(s)	488
BsmFI	GGGAC	2 cut(s)	118, 284
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	2 cut(s)	159, 192
Bso31I	GGTCTC	1 cut(s)	488
Bsp143I	GATC	2 cut(s)	249, 505
BspACI	CCGC	2 cut(s)	323, 452
BspANI	GGCC	2 cut(s)	159, 192
BspMI	ACCTGC	1 cut(s)	136
BspOI	GCTAGC	1 cut(s)	423
BspPI	GGATC	1 cut(s)	513
BspTNI	GGTCTC	1 cut(s)	488
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	2 cut(s)	249, 505
BssT1I	CCWWGG	1 cut(s)	525
Bst4CI	ACNGT	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	421
BstEII	GGTNACC	1 cut(s)	490
BstF5I	GGATG	2 cut(s)	171, 460
BstKTI	GATC	2 cut(s)	252, 508
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	2 cut(s)	249, 505
BstMWI	GCNNNNNNNGC	3 cut(s)	378, 420, 521
BstPI	GGTNACC	1 cut(s)	490
BstX2I	RGATCY	2 cut(s)	249, 505
BstYI	RGATCY	2 cut(s)	249, 505
BsuRI	GGCC	2 cut(s)	159, 192
BtsCI	GGATG	2 cut(s)	171, 460
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	4 cut(s)	82, 215, 319, 487
CviQI	GTAC	1 cut(s)	304
DpnI	GATC	2 cut(s)	251, 507
DpnII	GATC	2 cut(s)	249, 505
EaeI	YGGCCR	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	525
Eco31I	GGTCTC	1 cut(s)	488
Eco91I	GGTNACC	1 cut(s)	490
EcoO65I	GGTNACC	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	4 cut(s)	85, 218, 322, 490
FaqI	GGGAC	2 cut(s)	118, 284
FatI	CATG	4 cut(s)	81, 214, 318, 486
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	2 cut(s)	158, 467
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	2 cut(s)	266, 420
GluI	GCNGC	1 cut(s)	324
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	2 cut(s)	159, 192
Hin1II	CATG	4 cut(s)	85, 218, 322, 490
HinfI	GANTC	2 cut(s)	106, 430
HphI	GGTGA	2 cut(s)	117, 416
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	3 cut(s)	253, 467, 509
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	2 cut(s)	91, 214
HpyF10VI	GCNNNNNNNGC	3 cut(s)	378, 420, 521
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	4 cut(s)	85, 218, 322, 490
Kzo9I	GATC	2 cut(s)	249, 505
LmnI	GCTCC	1 cut(s)	469
LpnPI	CCDG	7 cut(s)	141, 174, 194, 238, 437, 480, 487
LweI	GCATC	2 cut(s)	390, 502
MaeI	CTAG	2 cut(s)	266, 420
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	2 cut(s)	123, 490
MalI	GATC	2 cut(s)	251, 507
MboI	GATC	2 cut(s)	249, 505
MboII	GAAGA	2 cut(s)	142, 177
MflI	RGATCY	2 cut(s)	249, 505
MlsI	TGGCCA	1 cut(s)	192
MluCI	AATT	2 cut(s)	57, 256
MluNI	TGGCCA	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	2 cut(s)	179, 506
Mox20I	TGGCCA	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	192
MseI	TTAA	3 cut(s)	33, 246, 375
MslI	CAYNNNNRTG	1 cut(s)	80
Msp20I	TGGCCA	1 cut(s)	192
Mva1269I	GAATGC	1 cut(s)	454
MwoI	GCNNNNNNNGC	3 cut(s)	378, 420, 521
NdeII	GATC	2 cut(s)	249, 505
NheI	GCTAGC	1 cut(s)	419
NlaIII	CATG	4 cut(s)	85, 218, 322, 490
NmuCI	GTSAC	1 cut(s)	123
PaqCI	CACCTGC	1 cut(s)	136
PctI	GAATGC	1 cut(s)	454
PfeI	GAWTC	1 cut(s)	430
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PspEI	GGTNACC	1 cut(s)	490
PspPI	GGNCC	1 cut(s)	157
PsuI	RGATCY	2 cut(s)	249, 505
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
RseI	CAYNNNNRTG	1 cut(s)	80
SaqAI	TTAA	3 cut(s)	33, 246, 375
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	2 cut(s)	249, 505
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	100
SetI	ASST	8 cut(s)	29, 130, 171, 213, 300, 374, 421, 466
SfaNI	GCATC	2 cut(s)	390, 502
SmiMI	CAYNNNNRTG	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	2 cut(s)	57, 256
SsiI	CCGC	2 cut(s)	323, 452
SspMI	CTAG	2 cut(s)	266, 420
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	1 cut(s)	29
TasI	AATT	2 cut(s)	57, 256
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	3 cut(s)	33, 246, 375
Tru9I	TTAA	3 cut(s)	33, 246, 375
TseFI	GTSAC	1 cut(s)	123
Tsp45I	GTSAC	1 cut(s)	123
TspDTI	ATGAA	2 cut(s)	20, 231
TspGWI	ACGGA	2 cut(s)	360, 460
XapI	RAATTY	1 cut(s)	57
XspI	CTAG	2 cut(s)	266, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.