Rh4AG386900

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000504
Physical Location & Seq
Forward (+)
69361746 .. 69362726
981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG386900.1

Sequence Viewer

Length: 480 bp
ATGGCTTTGAGTAGCAGTACTACTGGCAAACTGGAGACTCTGGAGGAGGTGGTAGAGATCAAATCCTCAGCTGATAAATTGTACGCGATCATAACCACCGAGCACCATAATGTTCCCAAAGCCTCCTCTGATCATATACACGACGTTGCAGTACATGAAGGTGACTGGGAAACTTCTGGTTCAATAAAGCTCTGGAAATATACCGTAGATGGAACTGTTGAGACACTTAAGGAGAAGGTGGAGATAGATGAAGCAAACAAGAGGGTGAGTTTCACAGCATTGGAGGGACATGTGCTGGAGCAGTACAAAAACTATAACAGTATCATTCAGGTCACTCCAAAGAGTGATGAAGGATCTAATCTGGTCAAAATTACTGTGGAATATGAAAAGCTTAATGAAGGTGATCAGCCTCCAAATAAGTACCTTCGCTTTCTGGTCAATGTCATGAAGGATATTGATGCACATCTTATTGCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

159

Amino Acids

17.83

Weight (kDa)

5.11

Isoelectric Point (pI)

28.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 12 - 158 5.9e-53 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 86
AclWI GGATC 1 cut(s) 361
AfaI GTAC 5 cut(s) 19, 83, 153, 305, 422
AflII CTTAAG 1 cut(s) 227
AflIII ACRYGT 1 cut(s) 289
AgsI TTSAA 1 cut(s) 183
AluBI AGCT 3 cut(s) 71, 190, 391
AluI AGCT 3 cut(s) 71, 190, 391
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 2 cut(s) 29, 215
AlwI GGATC 1 cut(s) 361
AsuHPI GGTGA 3 cut(s) 173, 277, 413
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 203
BclI TGATCA 2 cut(s) 130, 403
BcoDI GTCTC 2 cut(s) 29, 215
BfrI CTTAAG 1 cut(s) 227
BmcAI AGTACT 1 cut(s) 19
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 1 cut(s) 448
BmuI ACTGGG 1 cut(s) 175
BpmI CTGGAG 3 cut(s) 53, 62, 317
Bpu10I CCTNAGC 1 cut(s) 67
BsaBI GATNNNNATC 1 cut(s) 462
Bse1I ACTGG 3 cut(s) 28, 36, 170
Bse8I GATNNNNATC 1 cut(s) 462
BseJI GATNNNNATC 1 cut(s) 462
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 3 cut(s) 28, 36, 170
BseRI GAGGAG 2 cut(s) 59, 115
Bsh1236I CGCG 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 105
BslFI GGGAC 1 cut(s) 300
BsmAI GTCTC 2 cut(s) 29, 215
BsmFI GGGAC 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 5 cut(s) 57, 87, 130, 353, 403
BspCNI CTCAG 1 cut(s) 80
BspFNI CGCG 1 cut(s) 86
BspHI TCATGA 1 cut(s) 444
BspPI GGATC 1 cut(s) 361
BspTI CTTAAG 1 cut(s) 227
BsrI ACTGG 3 cut(s) 28, 36, 170
BssMI GATC 5 cut(s) 57, 87, 130, 353, 403
Bst4CI ACNGT 4 cut(s) 205, 217, 320, 376
BstAFI CTTAAG 1 cut(s) 227
BstDEI CTNAG 1 cut(s) 67
BstFNI CGCG 1 cut(s) 86
BstKTI GATC 5 cut(s) 60, 90, 133, 356, 406
BstMAI GTCTC 2 cut(s) 29, 215
BstMBI GATC 5 cut(s) 57, 87, 130, 353, 403
BstNSI RCATGY 1 cut(s) 293
BstUI CGCG 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
CciI TCATGA 1 cut(s) 444
Csp6I GTAC 5 cut(s) 18, 82, 152, 304, 421
CviAII CATG 3 cut(s) 155, 290, 445
CviJI RGCY 6 cut(s) 5, 71, 122, 190, 391, 409
CviKI_1 RGCY 6 cut(s) 5, 71, 122, 190, 391, 409
CviQI GTAC 5 cut(s) 18, 82, 152, 304, 421
DdeI CTNAG 1 cut(s) 67
DpnI GATC 5 cut(s) 59, 89, 132, 355, 405
DpnII GATC 5 cut(s) 57, 87, 130, 353, 403
FaeI CATG 3 cut(s) 158, 293, 448
FaqI GGGAC 1 cut(s) 300
FatI CATG 3 cut(s) 154, 289, 444
FbaI TGATCA 2 cut(s) 130, 403
GsuI CTGGAG 3 cut(s) 53, 62, 317
Hin1II CATG 3 cut(s) 158, 293, 448
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 1 cut(s) 37
HphI GGTGA 3 cut(s) 173, 277, 413
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 3 cut(s) 41, 193, 445
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 6 cut(s) 152, 229, 344, 392, 434, 442
HpyCH4III ACNGT 4 cut(s) 205, 217, 320, 376
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 2 cut(s) 149, 461
HpyF3I CTNAG 1 cut(s) 67
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 3 cut(s) 158, 293, 448
Ksp22I TGATCA 2 cut(s) 130, 403
Kzo9I GATC 5 cut(s) 57, 87, 130, 353, 403
LmnI GCTCC 1 cut(s) 298
LweI GCATC 1 cut(s) 448
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 2 cut(s) 161, 331
MalI GATC 5 cut(s) 59, 89, 132, 355, 405
MboI GATC 5 cut(s) 57, 87, 130, 353, 403
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 2 cut(s) 77, 369
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 8 cut(s) 37, 40, 76, 133, 136, 255, 277, 420
MseI TTAA 3 cut(s) 228, 393, 478
MslI CAYNNNNRTG 2 cut(s) 108, 159
MspA1I CMGCKG 1 cut(s) 71
MspCI CTTAAG 1 cut(s) 227
MvnI CGCG 1 cut(s) 86
NdeII GATC 5 cut(s) 57, 87, 130, 353, 403
NlaIII CATG 3 cut(s) 158, 293, 448
NmuCI GTSAC 2 cut(s) 161, 331
NspI RCATGY 1 cut(s) 293
PagI TCATGA 1 cut(s) 444
PciI ACATGT 1 cut(s) 289
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PscI ACATGT 1 cut(s) 289
PsuI RGATCY 1 cut(s) 353
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 5 cut(s) 19, 83, 153, 305, 422
RsaNI GTAC 5 cut(s) 18, 82, 152, 304, 421
RseI CAYNNNNRTG 2 cut(s) 108, 159
SaqAI TTAA 3 cut(s) 228, 393, 478
Sau3AI GATC 5 cut(s) 57, 87, 130, 353, 403
ScaI AGTACT 1 cut(s) 19
SchI GAGTC 1 cut(s) 31
SduI GDGCHC 1 cut(s) 105
SfaNI GCATC 1 cut(s) 448
SmiMI CAYNNNNRTG 2 cut(s) 108, 159
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 2 cut(s) 77, 369
TaaI ACNGT 4 cut(s) 205, 217, 320, 376
TaiI ACGT 1 cut(s) 147
TasI AATT 2 cut(s) 77, 369
TatI WGTACW 3 cut(s) 17, 151, 303
Tru1I TTAA 3 cut(s) 228, 393, 478
Tru9I TTAA 3 cut(s) 228, 393, 478
TseFI GTSAC 2 cut(s) 161, 331
Tsp45I GTSAC 2 cut(s) 161, 331
TspDTI ATGAA 6 cut(s) 171, 264, 363, 399, 411, 461
Vha464I CTTAAG 1 cut(s) 227
XceI RCATGY 1 cut(s) 293
ZrmI AGTACT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.