MD16G1024100.v1.1

Pathogenesis-related protein Bet v I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000504
Physical Location & Seq
Reverse (-)
1731391 .. 1732218
828 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1024100.v1.1.491

Sequence Viewer

Length: 462 bp
ATGGCTTTAGTTGGTAAGCTTGAGACGGAGGTAGAGATAAGTACAGCTGCTGATAAGTTCTACAAAATTTTCTCGGGCCAAATGCACCTGCTTCCTAACATCTGCTCTGACAAAATACAAGGGGTTGAGCTGCACGAAGGTGATTGGGAGACTGCGGGTTCTGTCAAGCATTGGGATTATACGTTGGATGGGAGTTCGTTAAGTGTAAAGGAGACGGTTGAAGCGATAGATGAGGAAAACAAAACAGTGAAGTTCAACGTTCTGGATGGAGAAATCTTGAAGCATTATAAGAGCTTTAGGGTGACACTAAAAGTAACAGAAAAGACTACTGGAGGGGGCAGTTTGGTGAAATGGATAATTGACTATGAGAAGGTGAAGGAGGAAATCCCAGATCCAGAATCATATCAGGACTTTGCAGTGAAGGTCACCAAAGACCTTGAAGCTCATCTTCTCACTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

154

Amino Acids

17.27

Weight (kDa)

4.91

Isoelectric Point (pI)

30.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 2 - 152 2.4e-56 Pathogenesis-related protein Bet v 1 family
Polyketide_cyc2 PF10604 6 - 148 6.1e-07 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
AarI CACCTGC 1 cut(s) 96
Acc36I ACCTGC 1 cut(s) 96
AciI CCGC 1 cut(s) 155
AclI AACGTT 1 cut(s) 258
AclWI GGATC 1 cut(s) 386
AcsI RAATTY 1 cut(s) 66
AfaI GTAC 1 cut(s) 43
AgsI TTSAA 4 cut(s) 221, 256, 280, 440
AleI CACNNNNGTG 1 cut(s) 138
AluBI AGCT 5 cut(s) 19, 47, 130, 294, 443
AluI AGCT 5 cut(s) 19, 47, 130, 294, 443
Alw26I GTCTC 3 cut(s) 17, 143, 206
AlwI GGATC 1 cut(s) 386
AlwNI CAGNNNCTG 1 cut(s) 50
Ama87I CYCGRG 1 cut(s) 73
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 2 cut(s) 47, 130
ApoI RAATTY 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 76
AsuHPI GGTGA 5 cut(s) 152, 313, 358, 385, 418
AvaI CYCGRG 1 cut(s) 73
BbvI GCAGC 2 cut(s) 34, 117
BccI CCATC 2 cut(s) 182, 260
BcoDI GTCTC 3 cut(s) 17, 143, 206
BfuAI ACCTGC 1 cut(s) 96
BisI GCNGC 2 cut(s) 48, 131
BlsI GCNGC 2 cut(s) 49, 132
BmeT110I CYCGRG 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 334
BseGI GGATG 2 cut(s) 193, 271
BseNI ACTGG 1 cut(s) 334
BseXI GCAGC 2 cut(s) 34, 117
BsgI GTGCAG 1 cut(s) 116
BshFI GGCC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 73
BsmAI GTCTC 3 cut(s) 17, 143, 206
BsmBI CGTCTC 2 cut(s) 17, 206
BsnI GGCC 1 cut(s) 78
BsoBI CYCGRG 1 cut(s) 73
Bsp143I GATC 1 cut(s) 391
BspACI CCGC 1 cut(s) 155
BspANI GGCC 1 cut(s) 78
BspMI ACCTGC 1 cut(s) 96
BspPI GGATC 1 cut(s) 386
BsrI ACTGG 1 cut(s) 334
BssMI GATC 1 cut(s) 391
Bst4CI ACNGT 2 cut(s) 217, 247
BstEII GGTNACC 1 cut(s) 424
BstF5I GGATG 2 cut(s) 193, 271
BstKTI GATC 1 cut(s) 394
BstMAI GTCTC 3 cut(s) 17, 143, 206
BstMBI GATC 1 cut(s) 391
BstPI GGTNACC 1 cut(s) 424
BstV1I GCAGC 2 cut(s) 34, 117
BstX2I RGATCY 1 cut(s) 391
BstYI RGATCY 1 cut(s) 391
BsuRI GGCC 1 cut(s) 78
BtsCI GGATG 2 cut(s) 193, 271
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 3 cut(s) 252, 423, 453
BveI ACCTGC 1 cut(s) 96
CaiI CAGNNNCTG 1 cut(s) 50
Cfr13I GGNCC 1 cut(s) 76
Csp6I GTAC 1 cut(s) 42
CviJI RGCY 7 cut(s) 5, 19, 47, 78, 130, 294, 443
CviKI_1 RGCY 7 cut(s) 5, 19, 47, 78, 130, 294, 443
CviQI GTAC 1 cut(s) 42
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
Eco88I CYCGRG 1 cut(s) 73
Eco91I GGTNACC 1 cut(s) 424
EcoO65I GGTNACC 1 cut(s) 424
Esp3I CGTCTC 2 cut(s) 17, 206
FaiI YATR 4 cut(s) 180, 288, 366, 403
FalI AAGNNNNNCTT 1 cut(s) 432
FauI CCCGC 1 cut(s) 148
Fnu4HI GCNGC 2 cut(s) 48, 131
FokI GGATG 2 cut(s) 200, 278
Fsp4HI GCNGC 2 cut(s) 48, 131
GluI GCNGC 2 cut(s) 48, 131
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 1 cut(s) 78
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 1 cut(s) 398
HphI GGTGA 5 cut(s) 152, 313, 358, 385, 418
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 4 cut(s) 263, 277, 395, 407
HpyAV CCTTC 4 cut(s) 131, 364, 370, 415
HpyCH4III ACNGT 2 cut(s) 217, 247
HpyCH4IV ACGT 2 cut(s) 182, 258
HpyCH4V TGCA 3 cut(s) 85, 133, 416
HpySE526I ACGT 2 cut(s) 182, 258
Kzo9I GATC 1 cut(s) 391
LpnPI CCDG 6 cut(s) 101, 248, 315, 392, 402, 408
Lsp1109I GCAGC 2 cut(s) 34, 117
MaeII ACGT 2 cut(s) 182, 258
MaeIII GTNAC 3 cut(s) 301, 313, 424
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MboII GAAGA 1 cut(s) 440
MflI RGATCY 1 cut(s) 391
MluCI AATT 2 cut(s) 66, 357
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 4 cut(s) 22, 226, 326, 373
MseI TTAA 1 cut(s) 200
MslI CAYNNNNRTG 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 47
NdeII GATC 1 cut(s) 391
NmuCI GTSAC 2 cut(s) 301, 424
OliI CACNNNNGTG 1 cut(s) 138
PaqCI CACCTGC 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 221
PfeI GAWTC 1 cut(s) 398
PkrI GCNGC 2 cut(s) 49, 132
PsiI TTATAA 1 cut(s) 288
Psp1406I AACGTT 1 cut(s) 258
PspEI GGTNACC 1 cut(s) 424
PspPI GGNCC 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 50
PsuI RGATCY 1 cut(s) 391
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 2 cut(s) 48, 131
Sau3AI GATC 1 cut(s) 391
Sau96I GGNCC 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 2 cut(s) 66, 357
SsiI CCGC 1 cut(s) 155
TaaI ACNGT 2 cut(s) 217, 247
TaiI ACGT 2 cut(s) 185, 261
TasI AATT 2 cut(s) 66, 357
TatI WGTACW 1 cut(s) 41
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 3 cut(s) 252, 423, 460
TseFI GTSAC 2 cut(s) 301, 424
TseI GCWGC 2 cut(s) 47, 130
Tsp45I GTSAC 2 cut(s) 301, 424
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 3 cut(s) 252, 423, 460
XapI RAATTY 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.