Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000504

Physical Location & Seq

Genomic Coordinates Reverse (-)

9683682 .. 9684657

Gene Structure 976 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G26460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCGACGTCGGGAACATACGTGACGGAGGTACCGTTAAAAGGAACAGCAGAGAAACACTTCCAGAGGTGGAGGAACGAGAACCATCTCTTCCCTGACGCTGTTGGCCACCACATCCAAGGTGTTTCTGTTCACGACGGCGAATGGGACACTCACGGAAGCATCAAGATTTGGAACTACACATTGGGAGATGGAAAGCAAGAGGAATTCAAGGAGAGGAGAGAGATGGACGATGAGAATAACACAATGAAGGTTGTAGGACTGGAAGGTCACGTGATGGAGCAGCTCAAGGTGTATGAGATCGATTTCCAATTTATTCCCAAGTCTGAAGAAGATTGCATCTGCAAAATCACTATGATATGGGAGAAGCGCAACGATGATTTCCCCGAACCAAGCAGCTACATGCAACTCCTCAAGAGCATGGTTATTGATATGGAGGACCACGTCCTTAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010228 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0080184

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

152

Amino Acids

17.77

Weight (kDa)

5.02

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	2 - 151	9.3e-67	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca	FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica	MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica	Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis	pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis	RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata	RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora	Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii	Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa	Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha	Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana	Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	267
AatII	GACGTC	1 cut(s)	11
Acc65I	GGTACC	1 cut(s)	31
AccB1I	GGYRCC	1 cut(s)	31
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	348
AcvI	CACGTG	1 cut(s)	274
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	211
AjiI	CACGTC	1 cut(s)	445
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AluBI	AGCT	3 cut(s)	286, 399, 455
AluI	AGCT	3 cut(s)	286, 399, 455
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	283, 396
ApoI	RAATTY	1 cut(s)	206
Asp700I	GAANNNNTTC	1 cut(s)	59
Asp718I	GGTACC	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	439
AvaII	GGWCC	1 cut(s)	439
BaeI	ACNNNNGTAYC	2 cut(s)	15, 48
BalI	TGGCCA	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	31
BbrPI	CACGTG	1 cut(s)	274
BbvI	GCAGC	2 cut(s)	295, 408
BccI	CCATC	4 cut(s)	93, 185, 220, 271
BceAI	ACGGC	1 cut(s)	154
BisI	GCNGC	2 cut(s)	284, 397
BlsI	GCNGC	2 cut(s)	285, 398
Bme18I	GGWCC	1 cut(s)	439
BmgBI	CACGTC	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	1 cut(s)	33
BmsI	GCATC	2 cut(s)	171, 348
BpuEI	CTTGAG	2 cut(s)	272, 398
Bsa29I	ATCGAT	1 cut(s)	303
BsaAI	YACGTR	2 cut(s)	22, 274
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	267
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	267
BseRI	GAGGAG	2 cut(s)	232, 401
BseXI	GCAGC	2 cut(s)	295, 408
BshFI	GGCC	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	31
BshVI	ATCGAT	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	300
BspANI	GGCC	1 cut(s)	108
BspDI	ATCGAT	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	33
BspT107I	GGYRCC	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	1 cut(s)	300
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	8
BstBAI	YACGTR	2 cut(s)	22, 274
BstF5I	GGATG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	1 cut(s)	303
BstMBI	GATC	1 cut(s)	300
BstNSI	RCATGY	1 cut(s)	406
BstV1I	GCAGC	2 cut(s)	295, 408
Bsu15I	ATCGAT	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	108
BsuTUI	ATCGAT	1 cut(s)	303
BtrI	CACGTC	1 cut(s)	445
BtsCI	GGATG	1 cut(s)	114
CfoI	GCGC	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	439
ClaI	ATCGAT	1 cut(s)	303
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	2 cut(s)	403, 421
CviJI	RGCY	4 cut(s)	108, 286, 399, 455
CviKI_1	RGCY	4 cut(s)	108, 286, 399, 455
CviQI	GTAC	1 cut(s)	32
DpnI	GATC	1 cut(s)	302
DpnII	GATC	1 cut(s)	300
DrdI	GACNNNNNNGTC	1 cut(s)	267
DseDI	GACNNNNNNGTC	1 cut(s)	267
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	348
Eco72I	CACGTG	1 cut(s)	274
EcoRI	GAATTC	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	2 cut(s)	406, 424
FaiI	YATR	7 cut(s)	19, 297, 356, 361, 404, 422, 434
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	2 cut(s)	402, 420
Fnu4HI	GCNGC	2 cut(s)	284, 397
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	2 cut(s)	284, 397
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	2 cut(s)	284, 397
HaeIII	GGCC	1 cut(s)	108
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	372
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	2 cut(s)	406, 424
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	453
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	5 cut(s)	12, 64, 134, 166, 415
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	3 cut(s)	10, 13, 140
HpyAV	CCTTC	2 cut(s)	244, 260
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	4 cut(s)	8, 21, 273, 444
HpyCH4V	TGCA	3 cut(s)	339, 345, 406
HpySE526I	ACGT	4 cut(s)	8, 21, 273, 444
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	2 cut(s)	406, 424
HspAI	GCGC	1 cut(s)	370
KpnI	GGTACC	1 cut(s)	35
Kzo9I	GATC	1 cut(s)	300
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	3 cut(s)	77, 108, 248
Lsp1109I	GCAGC	2 cut(s)	295, 408
LweI	GCATC	2 cut(s)	171, 348
MaeII	ACGT	4 cut(s)	8, 21, 273, 444
MaeIII	GTNAC	2 cut(s)	22, 269
MalI	GATC	1 cut(s)	302
MboI	GATC	1 cut(s)	300
MboII	GAAGA	3 cut(s)	82, 341, 344
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	2 cut(s)	206, 311
MluNI	TGGCCA	1 cut(s)	108
MnlI	CCTC	7 cut(s)	22, 60, 66, 196, 210, 422, 430
Mox20I	TGGCCA	1 cut(s)	108
MroXI	GAANNNNTTC	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	3 cut(s)	38, 450, 457
Msp20I	TGGCCA	1 cut(s)	108
NdeII	GATC	1 cut(s)	300
NlaIII	CATG	2 cut(s)	406, 424
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	2 cut(s)	22, 269
NspI	RCATGY	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	59
PflFI	GACNNNGTC	1 cut(s)	443
PkrI	GCNGC	2 cut(s)	285, 398
PmaCI	CACGTG	1 cut(s)	274
PmlI	CACGTG	1 cut(s)	274
Ppu21I	YACGTR	2 cut(s)	22, 274
PspCI	CACGTG	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	439
PsyI	GACNNNGTC	1 cut(s)	443
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SaqAI	TTAA	3 cut(s)	38, 450, 457
SatI	GCNGC	2 cut(s)	284, 397
Sau3AI	GATC	1 cut(s)	300
Sau96I	GGNCC	1 cut(s)	439
SfaNI	GCATC	2 cut(s)	171, 348
SinI	GGWCC	1 cut(s)	439
SmlI	CTYRAG	2 cut(s)	287, 413
SmoI	CTYRAG	2 cut(s)	287, 413
Sse9I	AATT	2 cut(s)	206, 311
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	4 cut(s)	11, 24, 276, 447
TaqI	TCGA	1 cut(s)	303
TasI	AATT	2 cut(s)	206, 311
Tru1I	TTAA	3 cut(s)	38, 450, 457
Tru9I	TTAA	3 cut(s)	38, 450, 457
TseFI	GTSAC	2 cut(s)	22, 269
TseI	GCWGC	2 cut(s)	283, 396
Tsp45I	GTSAC	2 cut(s)	22, 269
TspDTI	ATGAA	1 cut(s)	263
TspGWI	ACGGA	2 cut(s)	41, 171
Tth111I	GACNNNGTC	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	439
XapI	RAATTY	1 cut(s)	206
XceI	RCATGY	1 cut(s)	406
XmnI	GAANNNNTTC	1 cut(s)	59
ZraI	GACGTC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.