Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000504

Physical Location & Seq

Genomic Coordinates Forward (+)

1673364 .. 1675030

Gene Structure 1667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1023200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTTCTGCATGGTAAAATTGGGACTGAAATAGAAATTAAGGCACCAGCTGACAAGTTGTATAACATCTTCAAGAGCGCCCACCTCATCCCAAACATTTCTACTGCCCATATCAAAGGAGTTGATGTTCATGAAGGAGACTGGGAAACACACGGCTCTATTAAGATTTGGAAATATGAACTAGGGGACCATGTCGGAATATTCAAGGAACAGGTGGAGCTAGACGATGAGAACAAGGCCGCAACTCTGATTGGATTGGAAGGAGAAATGTTCAAGTATTATAAGAGATTCAAGGCTGTCTATCAATTCACTCAAAAAGATGAAGGCACGGGTATTGCCAACCTGTGGATCGAATACGAGAAACTGAACGAACATGTTGAAGCTCCAGATAGATATATCGGTTTGATGGTTAACCTCGTCCAGGATCTTGATGCTCACTTTCTCGGGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010228 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0080184

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

151

Amino Acids

17.11

Weight (kDa)

5.3

Isoelectric Point (pI)

16.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	4 - 148	2.1e-45	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca	FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica	MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica	Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis	pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis	RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata	RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora	Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii	Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa	Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha	Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana	Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
AccB1I	GGYRCC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	345
AciI	CCGC	1 cut(s)	240
AclWI	GGATC	2 cut(s)	356, 432
AfiI	CCNNNNNNNGG	2 cut(s)	345, 421
AflIII	ACRYGT	1 cut(s)	373
AgsI	TTSAA	5 cut(s)	73, 205, 274, 292, 380
AjnI	CCWGG	1 cut(s)	420
AloI	GAACNNNNNNTCC	2 cut(s)	111, 143
AluBI	AGCT	3 cut(s)	50, 220, 383
AluI	AGCT	3 cut(s)	50, 220, 383
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	2 cut(s)	356, 432
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	43
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BccI	CCATC	1 cut(s)	400
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	422
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	2 cut(s)	182, 221
BfoI	RGCGCY	1 cut(s)	81
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	422
Bme18I	GGWCC	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	2 cut(s)	45, 188
BmrFI	CCNGG	1 cut(s)	422
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	421
BmuI	ACTGGG	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 421
Bse1I	ACTGG	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	422
BseGI	GGATG	1 cut(s)	87
BseLI	CCNNNNNNNGG	2 cut(s)	345, 421
BseNI	ACTGG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	443
BslFI	GGGAC	2 cut(s)	37, 200
BslI	CCNNNNNNNGG	2 cut(s)	345, 421
BsmAI	GTCTC	1 cut(s)	132
BsmFI	GGGAC	2 cut(s)	37, 200
BsnI	GGCC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	443
Bsp143I	GATC	2 cut(s)	348, 424
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	1 cut(s)	239
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	45, 188
BspPI	GGATC	2 cut(s)	356, 432
BspT107I	GGYRCC	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	146
BssMI	GATC	2 cut(s)	348, 424
Bst2UI	CCWGG	1 cut(s)	422
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	2 cut(s)	351, 427
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	2 cut(s)	348, 424
BstNI	CCWGG	1 cut(s)	422
BstNSI	RCATGY	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BsuRI	GGCC	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	87
CciI	TCATGA	1 cut(s)	130
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	187
CviAII	CATG	4 cut(s)	11, 131, 191, 374
CviJI	RGCY	6 cut(s)	50, 156, 220, 239, 296, 383
CviKI_1	RGCY	6 cut(s)	50, 156, 220, 239, 296, 383
DpnI	GATC	2 cut(s)	350, 426
DpnII	GATC	2 cut(s)	348, 424
Eco47I	GGWCC	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	443
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	420
FaeI	CATG	4 cut(s)	14, 134, 194, 377
FaqI	GGGAC	2 cut(s)	37, 200
FatI	CATG	4 cut(s)	10, 130, 190, 373
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	2 cut(s)	182, 221
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	369
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	4 cut(s)	14, 134, 194, 377
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	1 cut(s)	288
HpaI	GTTAAC	1 cut(s)	412
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	2 cut(s)	197, 249
Hpy188III	TCNNGA	4 cut(s)	73, 131, 386, 428
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	3 cut(s)	128, 254, 317
HpyCH4V	TGCA	1 cut(s)	10
Hsp92II	CATG	4 cut(s)	14, 134, 194, 377
HspAI	GCGC	1 cut(s)	78
KspAI	GTTAAC	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	348, 424
LmnI	GCTCC	2 cut(s)	217, 388
LpnPI	CCDG	7 cut(s)	60, 127, 197, 356, 399, 407, 434
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	2 cut(s)	182, 221
MalI	GATC	2 cut(s)	350, 426
MboI	GATC	2 cut(s)	348, 424
MboII	GAAGA	1 cut(s)	61
MflI	RGATCY	1 cut(s)	424
MluCI	AATT	3 cut(s)	18, 36, 305
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	2 cut(s)	95, 425
MseI	TTAA	3 cut(s)	39, 162, 411
MspA1I	CMGCKG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	422
MvaI	CCWGG	1 cut(s)	422
NdeII	GATC	2 cut(s)	348, 424
NlaIII	CATG	4 cut(s)	14, 134, 194, 377
NlaIV	GGNNCC	2 cut(s)	45, 188
NspI	RCATGY	1 cut(s)	377
PagI	TCATGA	1 cut(s)	130
PciI	ACATGT	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	288
PflFI	GACNNNGTC	1 cut(s)	191
PflMI	CCANNNNNTGG	1 cut(s)	345
PfoI	TCCNGGA	1 cut(s)	420
PkrI	GCNGC	1 cut(s)	241
PscI	ACATGT	1 cut(s)	373
PsiI	TTATAA	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	420
PspN4I	GGNNCC	2 cut(s)	45, 188
PspPI	GGNCC	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	424
PsyI	GACNNNGTC	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	50
SaqAI	TTAA	3 cut(s)	39, 162, 411
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	2 cut(s)	348, 424
Sau96I	GGNCC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	422
SetI	ASST	7 cut(s)	52, 87, 216, 222, 345, 385, 417
SfaNI	GCATC	1 cut(s)	421
SinI	GGWCC	1 cut(s)	187
Sse9I	AATT	3 cut(s)	18, 36, 305
SsiI	CCGC	1 cut(s)	240
SspI	AATATT	1 cut(s)	201
SspMI	CTAG	2 cut(s)	182, 221
StyD4I	CCNGG	1 cut(s)	420
TaqI	TCGA	1 cut(s)	351
TasI	AATT	3 cut(s)	18, 36, 305
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	288
Tru1I	TTAA	3 cut(s)	39, 162, 411
Tru9I	TTAA	3 cut(s)	39, 162, 411
TspDTI	ATGAA	4 cut(s)	119, 147, 192, 336
Tth111I	GACNNNGTC	1 cut(s)	191
Van91I	CCANNNNNTGG	1 cut(s)	345
VpaK11BI	GGWCC	1 cut(s)	187
XagI	CCTNNNNNAGG	1 cut(s)	419
XceI	RCATGY	1 cut(s)	377
XspI	CTAG	2 cut(s)	182, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.