RLG00000034069

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000504
Physical Location & Seq
Reverse (-)
36363583 .. 36364140
558 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034069

Sequence Viewer

Length: 480 bp
ATGGCTTTGAGTAGCAGAACTACTGGCAACCTGGAGACTCTAGAGGCACTGGTAGCGGTCAAATCTTCAGCTGATAAATTGTACGCGATCATAAGCACGGAGCACCACAATGTTCCCAAAGCCTCCCCTGATAAAGTACATGACGTTACAGTACATGAAGGTGACTGGAAAACTTCTGGTTCGATCAAGCTCTGGAAAAATACCTTAGATGGAAGAGTTGAGACATTAAAGGAGAAGGTGGAGATGGATGTGGCAAATAAGAGGGTGAGTCTCACAGCATTGGAGGGACATGTGCTTGAGCAATACAGAAGCTTTAAGTATATATTTCAGGTCATTCCAAAGAGTGATGAAGGAGGTAATCTGGTCAAAATTACTCTGGAATATGAAAAGCTCAATGAGAGTGACCAGCCTCCGTATAAGTACCTCAGCCATGCGGTCAATGTCTTTAAGGATATTGATGCACATCTTATTGCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

160

Amino Acids

17.82

Weight (kDa)

6.16

Isoelectric Point (pI)

20.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 12 - 158 2e-48 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 86
AciI CCGC 2 cut(s) 56, 434
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 4 cut(s) 83, 138, 153, 422
AflIII ACRYGT 1 cut(s) 289
AjnI CCWGG 1 cut(s) 30
AluBI AGCT 4 cut(s) 71, 190, 312, 391
AluI AGCT 4 cut(s) 71, 190, 312, 391
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 3 cut(s) 29, 215, 275
AsuHPI GGTGA 2 cut(s) 173, 277
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 1 cut(s) 425
BccI CCATC 2 cut(s) 203, 238
BciT130I CCWGG 1 cut(s) 32
BcoDI GTCTC 3 cut(s) 29, 215, 275
BfaI CTAG 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 32
BmsI GCATC 1 cut(s) 448
BpmI CTGGAG 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 462
Bse1I ACTGG 3 cut(s) 28, 54, 170
Bse8I GATNNNNATC 1 cut(s) 462
BseBI CCWGG 1 cut(s) 32
BseGI GGATG 1 cut(s) 253
BseJI GATNNNNATC 1 cut(s) 462
BseMII CTCAG 1 cut(s) 439
BseNI ACTGG 3 cut(s) 28, 54, 170
Bsh1236I CGCG 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 105
BslFI GGGAC 1 cut(s) 300
BsmAI GTCTC 3 cut(s) 29, 215, 275
BsmFI GGGAC 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 2 cut(s) 87, 183
BspACI CCGC 2 cut(s) 56, 434
BspCNI CTCAG 1 cut(s) 438
BspFNI CGCG 1 cut(s) 86
BsrI ACTGG 3 cut(s) 28, 54, 170
BssMI GATC 2 cut(s) 87, 183
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 205, 425
BstF5I GGATG 1 cut(s) 253
BstFNI CGCG 1 cut(s) 86
BstKTI GATC 2 cut(s) 90, 186
BstMAI GTCTC 3 cut(s) 29, 215, 275
BstMBI GATC 2 cut(s) 87, 183
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 1 cut(s) 32
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 30
BstUI CGCG 1 cut(s) 86
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 47
Csp6I GTAC 4 cut(s) 82, 137, 152, 421
CviAII CATG 4 cut(s) 140, 155, 290, 431
CviJI RGCY 8 cut(s) 5, 71, 122, 190, 312, 391, 409, 429
CviKI_1 RGCY 8 cut(s) 5, 71, 122, 190, 312, 391, 409, 429
CviQI GTAC 4 cut(s) 82, 137, 152, 421
DdeI CTNAG 2 cut(s) 205, 425
DpnI GATC 2 cut(s) 89, 185
DpnII GATC 2 cut(s) 87, 183
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 30
FaeI CATG 4 cut(s) 143, 158, 293, 434
FaiI YATR 9 cut(s) 92, 141, 156, 291, 321, 323, 384, 417, 432
FaqI GGGAC 1 cut(s) 300
FatI CATG 4 cut(s) 139, 154, 289, 430
FokI GGATG 1 cut(s) 260
FspBI CTAG 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 53
Hin1II CATG 4 cut(s) 143, 158, 293, 434
HindIII AAGCTT 1 cut(s) 310
HinfI GANTC 2 cut(s) 37, 268
HphI GGTGA 2 cut(s) 173, 277
Hpy188III TCNNGA 3 cut(s) 41, 193, 377
HpyAV CCTTC 3 cut(s) 152, 229, 344
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 1 cut(s) 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 2 cut(s) 205, 425
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 4 cut(s) 143, 158, 293, 434
Kzo9I GATC 2 cut(s) 87, 183
LmnI GCTCC 1 cut(s) 100
LweI GCATC 1 cut(s) 448
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 3 cut(s) 145, 161, 401
MalI GATC 2 cut(s) 89, 185
MboI GATC 2 cut(s) 87, 183
MboII GAAGA 2 cut(s) 57, 225
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 2 cut(s) 77, 369
MlyI GAGTC 2 cut(s) 31, 277
MnlI CCTC 7 cut(s) 37, 133, 255, 277, 347, 420, 434
MseI TTAA 4 cut(s) 227, 315, 447, 478
MslI CAYNNNNRTG 2 cut(s) 108, 159
MspA1I CMGCKG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 32
MvaI CCWGG 1 cut(s) 32
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 2 cut(s) 87, 183
NlaIII CATG 4 cut(s) 143, 158, 293, 434
NmuCI GTSAC 2 cut(s) 161, 401
NspI RCATGY 1 cut(s) 293
PciI ACATGT 1 cut(s) 289
PleI GAGTC 2 cut(s) 31, 276
PpsI GAGTC 2 cut(s) 31, 276
PscI ACATGT 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 4 cut(s) 83, 138, 153, 422
RsaNI GTAC 4 cut(s) 82, 137, 152, 421
RseI CAYNNNNRTG 2 cut(s) 108, 159
SaqAI TTAA 4 cut(s) 227, 315, 447, 478
Sau3AI GATC 2 cut(s) 87, 183
SchI GAGTC 2 cut(s) 31, 277
ScrFI CCNGG 1 cut(s) 32
SduI GDGCHC 1 cut(s) 105
SfaNI GCATC 1 cut(s) 448
SmiMI CAYNNNNRTG 2 cut(s) 108, 159
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 2 cut(s) 77, 369
SsiI CCGC 2 cut(s) 56, 434
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 182
TasI AATT 2 cut(s) 77, 369
TatI WGTACW 2 cut(s) 136, 151
Tru1I TTAA 4 cut(s) 227, 315, 447, 478
Tru9I TTAA 4 cut(s) 227, 315, 447, 478
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 2 cut(s) 161, 401
Tsp45I GTSAC 2 cut(s) 161, 401
TspDTI ATGAA 3 cut(s) 171, 363, 399
TspGWI ACGGA 2 cut(s) 113, 402
TspRI CASTG 1 cut(s) 54
XbaI TCTAGA 1 cut(s) 40
XceI RCATGY 1 cut(s) 293
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.