Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003949

Physical Location & Seq

Genomic Coordinates Reverse (-)

12456784 .. 12458054

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0093700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAAAATGGAACCCCCACCATCACCGATCATCACTGATGATGTAGCCCATCAATTCTTCCCCTTCTTCAAAGTTTACAAAGATGGTCGTGTAGAGAGGTTCATGCCTTCTGAGAAACATCCTCCCTGTGATGACCCGAGCTCCAGTGTCCGGTCTAAAGATGTCGTCATCTCCTCCGAACCGGTTGTCTCGGCCCGGGTTTTCATGCCCCGAATACCCAACAACCCGGAAAAGAAGCTCCCTCTCGTGGTTTACATTCACGGTGGCGGGTTCTCAATAGCCTCCGCTTTCCACTCGGGTTACCACAAATACGTGTCCTCCCTTGTCGCCAAAGCCAACGTCATCGCCGTCTCCGTCGACTACCGGCTTGCCCCGGAGCACCCAATACCCGCATGCTACGACGACTCGTGGGCTGTACTCAAATGGGTGGCTTCCCATGCAAATGGGGATGGCCCTGATCCATGGCTGAACTGCCATGCAGATTTGGGTAGGGTCTTTTTCGCGGGTGACAGTGCCGGGGCGAATATTTCCCACAACATGACATCTCGGGTCGGGTCAACTGGGTTACCGGGAGTGAGGATAGTAGGAGTCGCTTTGGTGCATCCTTACTTTGGTGGTACGGAAGATGATAAAATGTGGTTGTACATGTGTCCGGAGAATGGCGGGTTGGATGATCCGAGGCTGAAACCGGCCGTAGAGGATCTGAGAAAGCTAGACTGTGAGAGGGTTTTGGTGTTTGTGGCCGGGAAAGACCATTTGAGGGAGAGAGGGACTTGTTATGTTGAGGCTTTGAAGGGAAGTGGGTGGAAAGGGACGGTGGAGATTGTAGAGCATGAGGAGGAGAGGCATGTCTTCCATCTGATGAAGCCTGAATCTGAGAAAGCTGTGGATTTGATGAATAGGTTGGTCTCCTTCATCAATCAAGCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

34.39

Weight (kDa)

6.06

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	66 - 124	6.8e-09	Carboxylesterase family
BD-FAE	PF20434	72 - 177	1.2e-12	BD-FAE
Abhydrolase_3	PF07859	83 - 286	1.9e-45	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06361
malus_domestica	MD08G1226000.v1.1
pyrus_communis	pycom05g24160
rosa_chinensis	RchiOBHm_Chr2g0159691 RchiOBHm_Chr2g0168161 RchiOBHm_Chr4g0433811 RchiOBHm_Chr5g0018671 RchiOBHm_Chr5g0082331
rosa_multiflora	Rmu_sc0000698.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019890 Rroxscaffold_1G00030050 Rroxscaffold_1G00032950 Rroxscaffold_5G00335810 Rroxscaffold_5G00345660 Rroxscaffold_5G00345670 Rroxscaffold_6G00401880 Rroxscaffold_6G00401890 Rroxscaffold_7G00194550
rosa_rugosa	Rorug04G0046200 Rorug04G0124800 Rorug04G0335500 Rorug04G0429300 Rorug05G0081300 Rorug05G0117900 Rorug05G0181600 Rorug05G0438900 Rorug05G0452900 Rorug05G0506200.1 Rorug06G0093700 Rorug06G0458300 Rorug07G0106200 Rorug07G0121100
rosa_samantha	Rh2DG566900 Rh3CG025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	357
AccII	CGCG	1 cut(s)	503
AccIII	TCCGGA	1 cut(s)	652
AciI	CCGC	5 cut(s)	267, 285, 390, 503, 663
AclWI	GGATC	3 cut(s)	452, 668, 708
AcoI	YGGCCR	2 cut(s)	690, 741
AfaI	GTAC	3 cut(s)	417, 619, 644
AfiI	CCNNNNNNNGG	5 cut(s)	150, 247, 611, 659, 760
AflIII	ACRYGT	2 cut(s)	312, 645
AgeI	ACCGGT	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	70, 793
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
AluBI	AGCT	4 cut(s)	141, 238, 712, 884
AluI	AGCT	4 cut(s)	141, 238, 712, 884
Alw21I	GWGCWC	2 cut(s)	143, 381
Alw26I	GTCTC	3 cut(s)	193, 355, 913
AlwI	GGATC	3 cut(s)	452, 668, 708
Ama87I	CYCGRG	4 cut(s)	136, 195, 295, 546
Aor13HI	TCCGGA	1 cut(s)	652
AoxI	GGCC	4 cut(s)	192, 451, 690, 741
ArsI	GACNNNNNNTTYG	4 cut(s)	171, 203, 324, 356
AsiGI	ACCGGT	1 cut(s)	181
AspS9I	GGNCC	2 cut(s)	193, 452
AsuC2I	CCSGG	7 cut(s)	196, 197, 227, 374, 517, 570, 745
AsuHPI	GGTGA	2 cut(s)	15, 518
AvaI	CYCGRG	4 cut(s)	136, 195, 295, 546
BanII	GRGCYC	1 cut(s)	143
BauI	CACGAG	2 cut(s)	245, 406
BbsI	GAAGAC	1 cut(s)	844
Bbv12I	GWGCWC	2 cut(s)	143, 381
BccI	CCATC	5 cut(s)	28, 57, 77, 443, 864
BceAI	ACGGC	2 cut(s)	332, 677
BcnI	CCSGG	7 cut(s)	196, 197, 227, 374, 517, 570, 745
BcoDI	GTCTC	3 cut(s)	193, 355, 913
BfaI	CTAG	1 cut(s)	713
Bme1390I	CCNGG	7 cut(s)	196, 197, 227, 374, 517, 570, 745
BmeT110I	CYCGRG	4 cut(s)	136, 195, 295, 546
BmgT120I	GGNCC	2 cut(s)	193, 452
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	7 cut(s)	196, 197, 227, 374, 517, 570, 745
BmrI	ACTGGG	1 cut(s)	570
BmsI	GCATC	1 cut(s)	610
BmuI	ACTGGG	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	844
BpmI	CTGGAG	1 cut(s)	127
BpuMI	CCSGG	7 cut(s)	196, 197, 227, 374, 517, 570, 745
BsaAI	YACGTR	1 cut(s)	313
BsaI	GGTCTC	1 cut(s)	913
BsaJI	CCNNGG	5 cut(s)	195, 372, 461, 516, 677
BsaWI	WCCGGW	3 cut(s)	150, 181, 652
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 302, 332
Bsc4I	CCNNNNNNNGG	5 cut(s)	150, 247, 611, 659, 760
Bse118I	RCCGGY	3 cut(s)	181, 363, 688
Bse1I	ACTGG	2 cut(s)	144, 565
BseAI	TCCGGA	1 cut(s)	652
BseDI	CCNNGG	5 cut(s)	195, 372, 461, 516, 677
BseGI	GGATG	4 cut(s)	118, 454, 601, 676
BseLI	CCNNNNNNNGG	5 cut(s)	150, 247, 611, 659, 760
BseMII	CTCAG	3 cut(s)	102, 695, 867
BseNI	ACTGG	2 cut(s)	144, 565
BseRI	GAGGAG	3 cut(s)	163, 851, 854
BseX3I	CGGCCG	1 cut(s)	690
Bsh1236I	CGCG	1 cut(s)	503
Bsh1285I	CGRYCG	1 cut(s)	693
BshFI	GGCC	4 cut(s)	194, 453, 692, 743
BshTI	ACCGGT	1 cut(s)	181
BsiEI	CGRYCG	1 cut(s)	693
BsiHKAI	GWGCWC	2 cut(s)	143, 381
BsiHKCI	CYCGRG	4 cut(s)	136, 195, 295, 546
BslFI	GGGAC	2 cut(s)	784, 826
BslI	CCNNNNNNNGG	5 cut(s)	150, 247, 611, 659, 760
BsmAI	GTCTC	3 cut(s)	193, 355, 913
BsmBI	CGTCTC	1 cut(s)	355
BsmFI	GGGAC	2 cut(s)	784, 826
BsnI	GGCC	4 cut(s)	194, 453, 692, 743
Bso31I	GGTCTC	1 cut(s)	913
BsoBI	CYCGRG	4 cut(s)	136, 195, 295, 546
Bsp1286I	GDGCHC	2 cut(s)	143, 381
Bsp13I	TCCGGA	1 cut(s)	652
Bsp1407I	TGTACA	1 cut(s)	642
Bsp143I	GATC	4 cut(s)	27, 457, 673, 700
Bsp19I	CCATGG	1 cut(s)	461
BspACI	CCGC	5 cut(s)	267, 285, 390, 503, 663
BspANI	GGCC	4 cut(s)	194, 453, 692, 743
BspCNI	CTCAG	3 cut(s)	103, 696, 868
BspEI	TCCGGA	1 cut(s)	652
BspFNI	CGCG	1 cut(s)	503
BspLI	GGNNCC	1 cut(s)	12
BspPI	GGATC	3 cut(s)	452, 668, 708
BspTNI	GGTCTC	1 cut(s)	913
BsrFI	RCCGGY	3 cut(s)	181, 363, 688
BsrGI	TGTACA	1 cut(s)	642
BsrI	ACTGG	2 cut(s)	144, 565
BssAI	RCCGGY	3 cut(s)	181, 363, 688
BssECI	CCNNGG	5 cut(s)	195, 372, 461, 516, 677
BssMI	GATC	4 cut(s)	27, 457, 673, 700
BssSI	CACGAG	2 cut(s)	245, 406
BssT1I	CCWWGG	1 cut(s)	461
Bst2BI	CACGAG	2 cut(s)	245, 406
Bst4CI	ACNGT	4 cut(s)	263, 512, 719, 817
BstAUI	TGTACA	1 cut(s)	642
BstBAI	YACGTR	1 cut(s)	313
BstC8I	GCNNGC	2 cut(s)	369, 394
BstDEI	CTNAG	3 cut(s)	111, 704, 876
BstDSI	CCRYGG	1 cut(s)	461
BstEII	GGTNACC	2 cut(s)	299, 564
BstF5I	GGATG	4 cut(s)	118, 454, 601, 676
BstFNI	CGCG	1 cut(s)	503
BstKTI	GATC	4 cut(s)	30, 460, 676, 703
BstMAI	GTCTC	3 cut(s)	193, 355, 913
BstMBI	GATC	4 cut(s)	27, 457, 673, 700
BstMCI	CGRYCG	1 cut(s)	693
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNSI	RCATGY	3 cut(s)	396, 649, 851
BstPI	GGTNACC	2 cut(s)	299, 564
BstSCI	CCNGG	7 cut(s)	194, 195, 225, 372, 515, 568, 743
BstUI	CGCG	1 cut(s)	503
BstV2I	GAAGAC	1 cut(s)	844
BstX2I	RGATCY	1 cut(s)	700
BstXI	CCANNNNNNTGG	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	700
BstZI	CGGCCG	1 cut(s)	690
BsuRI	GGCC	4 cut(s)	194, 453, 692, 743
BtgI	CCRYGG	1 cut(s)	461
BtgZI	GCGATG	1 cut(s)	328
BtsCI	GGATG	4 cut(s)	118, 454, 601, 676
BtsIMutI	CAGTG	3 cut(s)	33, 151, 517
Cac8I	GCNNGC	2 cut(s)	369, 394
Cfr10I	RCCGGY	3 cut(s)	181, 363, 688
Cfr13I	GGNCC	2 cut(s)	193, 452
Cfr9I	CCCGGG	1 cut(s)	195
Csp6I	GTAC	3 cut(s)	416, 618, 643
CspAI	ACCGGT	1 cut(s)	181
CviQI	GTAC	3 cut(s)	416, 618, 643
DdeI	CTNAG	3 cut(s)	111, 704, 876
DpnI	GATC	4 cut(s)	29, 459, 675, 702
DpnII	GATC	4 cut(s)	27, 457, 673, 700
EaeI	YGGCCR	2 cut(s)	690, 741
EagI	CGGCCG	1 cut(s)	690
Ecl136II	GAGCTC	1 cut(s)	141
EclXI	CGGCCG	1 cut(s)	690
Eco130I	CCWWGG	1 cut(s)	461
Eco24I	GRGCYC	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	913
Eco52I	CGGCCG	1 cut(s)	690
Eco53kI	GAGCTC	1 cut(s)	141
Eco88I	CYCGRG	4 cut(s)	136, 195, 295, 546
Eco91I	GGTNACC	2 cut(s)	299, 564
EcoICRI	GAGCTC	1 cut(s)	141
EcoO65I	GGTNACC	2 cut(s)	299, 564
EcoT14I	CCWWGG	1 cut(s)	461
EcoT38I	GRGCYC	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	461
Esp3I	CGTCTC	1 cut(s)	355
FaqI	GGGAC	2 cut(s)	784, 826
FauI	CCCGC	4 cut(s)	260, 397, 496, 656
FblI	GTMKAC	1 cut(s)	357
FokI	GGATG	4 cut(s)	105, 461, 588, 683
FriOI	GRGCYC	1 cut(s)	143
FspBI	CTAG	1 cut(s)	713
GsuI	CTGGAG	1 cut(s)	127
HaeIII	GGCC	4 cut(s)	194, 453, 692, 743
HincII	GTYRAC	2 cut(s)	358, 558
HindII	GTYRAC	2 cut(s)	358, 558
HinfI	GANTC	3 cut(s)	404, 588, 872
HphI	GGTGA	2 cut(s)	15, 518
Hpy166II	GTNNAC	4 cut(s)	76, 253, 358, 558
Hpy188I	TCNGA	6 cut(s)	112, 178, 678, 705, 861, 877
Hpy188III	TCNNGA	1 cut(s)	653
Hpy8I	GTNNAC	4 cut(s)	76, 253, 358, 558
Hpy99I	CGWCG	2 cut(s)	359, 404
HpyAV	CCTTC	4 cut(s)	73, 117, 787, 922
HpyCH4III	ACNGT	4 cut(s)	263, 512, 719, 817
HpyCH4IV	ACGT	2 cut(s)	312, 339
HpyCH4V	TGCA	3 cut(s)	440, 479, 601
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	3 cut(s)	111, 704, 876
HpySE526I	ACGT	2 cut(s)	312, 339
Kpn2I	TCCGGA	1 cut(s)	652
Kzo9I	GATC	4 cut(s)	27, 457, 673, 700
LmnI	GCTCC	3 cut(s)	146, 243, 376
LweI	GCATC	1 cut(s)	610
MaeI	CTAG	1 cut(s)	713
MaeII	ACGT	2 cut(s)	312, 339
MaeIII	GTNAC	3 cut(s)	299, 506, 564
MalI	GATC	4 cut(s)	29, 459, 675, 702
MboI	GATC	4 cut(s)	27, 457, 673, 700
MboII	GAAGA	4 cut(s)	49, 58, 635, 844
MflI	RGATCY	1 cut(s)	700
MhlI	GDGCHC	2 cut(s)	143, 381
MluCI	AATT	1 cut(s)	53
MlyI	GAGTC	2 cut(s)	398, 597
MmeI	TCCRAC	1 cut(s)	648
MroI	TCCGGA	1 cut(s)	652
MslI	CAYNNNNRTG	1 cut(s)	441
MspR9I	CCNGG	7 cut(s)	196, 197, 227, 374, 517, 570, 745
MvnI	CGCG	1 cut(s)	503
MwoI	GCNNNNNNNGC	1 cut(s)	437
NciI	CCSGG	7 cut(s)	196, 197, 227, 374, 517, 570, 745
NcoI	CCATGG	1 cut(s)	461
NdeII	GATC	4 cut(s)	27, 457, 673, 700
NlaIV	GGNNCC	1 cut(s)	12
NmeAIII	GCCGAG	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	506
NspI	RCATGY	3 cut(s)	396, 649, 851
PaeI	GCATGC	1 cut(s)	396
PciI	ACATGT	1 cut(s)	645
PcsI	WCGNNNNNNNCGW	2 cut(s)	345, 351
PfeI	GAWTC	1 cut(s)	872
PinAI	ACCGGT	1 cut(s)	181
PleI	GAGTC	2 cut(s)	398, 596
PpsI	GAGTC	2 cut(s)	398, 596
Ppu21I	YACGTR	1 cut(s)	313
PscI	ACATGT	1 cut(s)	645
Psp124BI	GAGCTC	1 cut(s)	143
PspEI	GGTNACC	2 cut(s)	299, 564
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	2 cut(s)	193, 452
PsuI	RGATCY	1 cut(s)	700
RsaI	GTAC	3 cut(s)	417, 619, 644
RsaNI	GTAC	3 cut(s)	416, 618, 643
RseI	CAYNNNNRTG	1 cut(s)	441
SacI	GAGCTC	1 cut(s)	143
SalI	GTCGAC	1 cut(s)	356
Sau3AI	GATC	4 cut(s)	27, 457, 673, 700
Sau96I	GGNCC	2 cut(s)	193, 452
SchI	GAGTC	2 cut(s)	398, 597
ScrFI	CCNGG	7 cut(s)	196, 197, 227, 374, 517, 570, 745
SduI	GDGCHC	2 cut(s)	143, 381
SetI	ASST	8 cut(s)	101, 143, 240, 315, 342, 714, 886, 905
SfaNI	GCATC	1 cut(s)	610
SmaI	CCCGGG	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	441
SphI	GCATGC	1 cut(s)	396
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	5 cut(s)	267, 285, 390, 503, 663
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	1 cut(s)	713
SstI	GAGCTC	1 cut(s)	143
StyD4I	CCNGG	7 cut(s)	194, 195, 225, 372, 515, 568, 743
StyI	CCWWGG	1 cut(s)	461
TaaI	ACNGT	4 cut(s)	263, 512, 719, 817
TaiI	ACGT	2 cut(s)	315, 342
TaqI	TCGA	1 cut(s)	357
TasI	AATT	1 cut(s)	53
TatI	WGTACW	2 cut(s)	415, 642
TfiI	GAWTC	1 cut(s)	872
TscAI	CASTG	3 cut(s)	40, 151, 517
TseFI	GTSAC	1 cut(s)	506
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	6 cut(s)	17, 91, 193, 878, 904, 911
TspGWI	ACGGA	2 cut(s)	343, 635
TspMI	CCCGGG	1 cut(s)	195
TspRI	CASTG	3 cut(s)	40, 151, 517
XceI	RCATGY	3 cut(s)	396, 649, 851
XmaI	CCCGGG	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	357
XspI	CTAG	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.