Rorug04G0429300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003949
Physical Location & Seq
Forward (+)
58667825 .. 58671279
3455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0429300.1

Sequence Viewer

Length: 819 bp
ATGAACAGTGCCGGCTCCAGCCGAGCCGATATAGTCAAAGACGATTTTGCCCCCGCCTGCGTTTCTTGCCTCAACACCTGGCGTACTGCTCAGTCCTATCGTGTCTTCGCTACTTCAATCCACAGAGTCCACCTCTCTCTGAGAGAGAGAGAGAGAGAGAGAGAAACAGCGAAGGTGGTACTAGGACTGAAATCGGAGAGGAGGAAGGGAGAATTTATCAAGGCCAATGAAGGTATTGCTTCTTCTTGCTCTGGGTGGTTGTTCGTGAATTTTTCAGAATGGAATAGCAGAGAAGAATTGCTGTTAATGGTGGTACATACCTTTTTCTTCATTGCTTTTCCTTTGTGCATGTTTGAATGTGAAAAGGAACTCAGGGCTTCAAATGACCGTTCTGATGATGAAGGAGGGACTGACAAGAGGAATGGTGTTAAGGCAAGGAACAAGTACCATCCCCCGATGTTGCTGAAGGGACATCAATTTAAAAATGCTTCTTTGCTGGCAGACTTGGCTGGTGCAAGGGGGATGAGAGTAAAATGGAAGATATGTTCTAGAGGGGCTCTGAGAGCTGCAAACTCCAATACCTCTGTACCTCCAAGGGGAAGGACACTGCAATCAGAGACCAAGCTTCAGTGCTTTGACCCTGTAACGATGAAATACTTGGGATATTATCCTGTATTGACACCTGATGTGGTCAAGGAGGGGGTAGCACGAGCAAGTAAGGCACAGAAAACATGGGCAAAGAGTAACTTCAAGCAAAGAAACCTGTTTCTTCGGATTATTCTCAAGTATATAATAGAACACCAAGGGGCTACCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

30.87

Weight (kDa)

9.86

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 54
AcsI RAATTY 2 cut(s) 212, 268
AcuI CTGAAG 2 cut(s) 485, 611
AfaI GTAC 5 cut(s) 85, 180, 315, 446, 588
AfiI CCNNNNNNNGG 1 cut(s) 596
AgsI TTSAA 4 cut(s) 117, 356, 381, 751
AjnI CCWGG 1 cut(s) 77
AloI GAACNNNNNNTCC 2 cut(s) 529, 561
AluBI AGCT 2 cut(s) 566, 625
AluI AGCT 2 cut(s) 566, 625
Alw26I GTCTC 1 cut(s) 611
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 1 cut(s) 566
ApoI RAATTY 2 cut(s) 212, 268
BaeI ACNNNNGTAYC 2 cut(s) 570, 603
BanII GRGCYC 1 cut(s) 559
BarI GAAGNNNNNNTAC 2 cut(s) 226, 258
BauI CACGAG 1 cut(s) 708
BbsI GAAGAC 1 cut(s) 97
BbvI GCAGC 1 cut(s) 553
BccI CCATC 1 cut(s) 456
BciT130I CCWGG 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 611
BfaI CTAG 2 cut(s) 182, 549
BisI GCNGC 1 cut(s) 567
BlsI GCNGC 1 cut(s) 568
Bme1390I CCNGG 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 97
BplI GAGNNNNNCTC 2 cut(s) 117, 149
BpuEI CTTGAG 1 cut(s) 767
BsaI GGTCTC 1 cut(s) 611
BsaJI CCNNGG 2 cut(s) 593, 802
Bsc4I CCNNNNNNNGG 1 cut(s) 596
Bse118I RCCGGY 1 cut(s) 11
Bse3DI GCAATG 1 cut(s) 330
BseBI CCWGG 1 cut(s) 79
BseDI CCNNGG 2 cut(s) 593, 802
BseGI GGATG 2 cut(s) 448, 528
BseLI CCNNNNNNNGG 1 cut(s) 596
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 4 cut(s) 104, 131, 385, 551
BseRI GAGGAG 1 cut(s) 214
BseXI GCAGC 1 cut(s) 553
BshFI GGCC 1 cut(s) 224
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 2 cut(s) 421, 483
BslI CCNNNNNNNGG 1 cut(s) 596
BsmAI GTCTC 1 cut(s) 611
BsmFI GGGAC 2 cut(s) 421, 483
BsnI GGCC 1 cut(s) 224
Bso31I GGTCTC 1 cut(s) 611
Bsp1286I GDGCHC 1 cut(s) 559
BspACI CCGC 1 cut(s) 54
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 4 cut(s) 103, 132, 384, 552
BspLI GGNNCC 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 611
BsrDI GCAATG 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 11
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 2 cut(s) 593, 802
BssSI CACGAG 1 cut(s) 708
BssT1I CCWWGG 2 cut(s) 593, 802
Bst2BI CACGAG 1 cut(s) 708
Bst2UI CCWGG 1 cut(s) 79
Bst4CI ACNGT 2 cut(s) 8, 389
BstC8I GCNNGC 3 cut(s) 13, 58, 498
BstDEI CTNAG 4 cut(s) 90, 140, 371, 560
BstF5I GGATG 2 cut(s) 448, 528
BstMAI GTCTC 1 cut(s) 611
BstMWI GCNNNNNNNGC 4 cut(s) 66, 506, 563, 719
BstNI CCWGG 1 cut(s) 79
BstNSI RCATGY 1 cut(s) 352
BstSCI CCNGG 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 553
BstV2I GAAGAC 1 cut(s) 97
BsuRI GGCC 1 cut(s) 224
BtsCI GGATG 2 cut(s) 448, 528
BtsI GCAGTG 1 cut(s) 605
BtsIMutI CAGTG 3 cut(s) 13, 605, 635
Cac8I GCNNGC 3 cut(s) 13, 58, 498
Cfr10I RCCGGY 1 cut(s) 11
Csp6I GTAC 5 cut(s) 84, 179, 314, 445, 587
CviAII CATG 2 cut(s) 349, 732
CviQI GTAC 5 cut(s) 84, 179, 314, 445, 587
DdeI CTNAG 4 cut(s) 90, 140, 371, 560
DraI TTTAAA 1 cut(s) 481
Eco130I CCWWGG 2 cut(s) 593, 802
Eco24I GRGCYC 1 cut(s) 559
Eco31I GGTCTC 1 cut(s) 611
Eco57I CTGAAG 2 cut(s) 485, 611
EcoRII CCWGG 1 cut(s) 77
EcoT14I CCWWGG 2 cut(s) 593, 802
EcoT38I GRGCYC 1 cut(s) 559
ErhI CCWWGG 2 cut(s) 593, 802
FaeI CATG 2 cut(s) 352, 735
FaiI YATR 7 cut(s) 32, 318, 350, 544, 733, 789, 791
FalI AAGNNNNNCTT 2 cut(s) 731, 763
FaqI GGGAC 2 cut(s) 421, 483
FatI CATG 2 cut(s) 348, 731
FauI CCCGC 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 567
FokI GGATG 2 cut(s) 435, 535
FriOI GRGCYC 1 cut(s) 559
Fsp4HI GCNGC 1 cut(s) 567
FspBI CTAG 2 cut(s) 182, 549
GluI GCNGC 1 cut(s) 567
HaeIII GGCC 1 cut(s) 224
HapII CCGG 1 cut(s) 12
Hin1II CATG 2 cut(s) 352, 735
HindIII AAGCTT 1 cut(s) 623
HinfI GANTC 1 cut(s) 126
HpaII CCGG 1 cut(s) 12
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 7 cut(s) 141, 196, 277, 394, 561, 616, 774
Hpy188III TCNNGA 2 cut(s) 265, 549
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 6 cut(s) 166, 199, 224, 395, 460, 594
HpyCH4III ACNGT 2 cut(s) 8, 389
HpyCH4V TGCA 4 cut(s) 348, 515, 569, 610
HpyF10VI GCNNNNNNNGC 4 cut(s) 66, 506, 563, 719
HpyF3I CTNAG 4 cut(s) 90, 140, 371, 560
Hsp92II CATG 2 cut(s) 352, 735
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
LmnI GCTCC 1 cut(s) 20
Lsp1109I GCAGC 1 cut(s) 553
MaeI CTAG 2 cut(s) 182, 549
MaeIII GTNAC 2 cut(s) 643, 743
MboII GAAGA 6 cut(s) 97, 234, 305, 319, 550, 761
MhlI GDGCHC 1 cut(s) 559
MluCI AATT 4 cut(s) 212, 268, 296, 476
MlyI GAGTC 1 cut(s) 135
MroNI GCCGGC 1 cut(s) 11
MseI TTAA 3 cut(s) 305, 429, 480
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 79
MvaI CCWGG 1 cut(s) 79
MwoI GCNNNNNNNGC 4 cut(s) 66, 506, 563, 719
NaeI GCCGGC 1 cut(s) 13
NgoMIV GCCGGC 1 cut(s) 11
NlaIII CATG 2 cut(s) 352, 735
NlaIV GGNNCC 1 cut(s) 16
NmeAIII GCCGAG 1 cut(s) 47
NspI RCATGY 1 cut(s) 352
PdiI GCCGGC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 568
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 77
PspGI CCWGG 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 16
RsaI GTAC 5 cut(s) 85, 180, 315, 446, 588
RsaNI GTAC 5 cut(s) 84, 179, 314, 445, 587
SaqAI TTAA 3 cut(s) 305, 429, 480
SatI GCNGC 1 cut(s) 567
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 79
SduI GDGCHC 1 cut(s) 559
SmlI CTYRAG 1 cut(s) 782
SmoI CTYRAG 1 cut(s) 782
Sse9I AATT 4 cut(s) 212, 268, 296, 476
SsiI CCGC 1 cut(s) 54
SspMI CTAG 2 cut(s) 182, 549
StyD4I CCNGG 1 cut(s) 77
StyI CCWWGG 2 cut(s) 593, 802
TaaI ACNGT 2 cut(s) 8, 389
TasI AATT 4 cut(s) 212, 268, 296, 476
Tru1I TTAA 3 cut(s) 305, 429, 480
Tru9I TTAA 3 cut(s) 305, 429, 480
TscAI CASTG 3 cut(s) 13, 612, 635
TseI GCWGC 1 cut(s) 566
TspDTI ATGAA 5 cut(s) 17, 243, 319, 414, 665
TspRI CASTG 3 cut(s) 13, 612, 635
XapI RAATTY 2 cut(s) 212, 268
XbaI TCTAGA 1 cut(s) 548
XceI RCATGY 1 cut(s) 352
XspI CTAG 2 cut(s) 182, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.