Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003949

Physical Location & Seq

Genomic Coordinates Forward (+)

25754087 .. 25755866

Gene Structure 1780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g24160.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGTGGAGCAAAAAGCAAGAGACAATATTGTTGCTGATAAAGTTCTGATCCAGATGAAACAGAGGTTTGCTAGCGTCTTCTGGAACGATAGCAATTCACAGCCTAGGGTTTGGAAAAGGAAGCAGCAAATCACAGATGCTATAAAGCAAGCCCGCTCTGCTGTAATCGTTTCTTCGAAGGATACCCTATTCACACCGATGCAGTGCCAACAGTTGTGGGACGAATTCAAAAAGAAGACTCGGAAACATATCGTCAAAGCTACTTCAGACGTGGAAGATGAAGAGTCTGTTGAGAGTTGTCCCACATTGGTGAGGGACAAGGTTTGCTATGTGCTTATATGGTCTTGGGCTACTCCCCATATTGCCAATTGGTTTTATGGTGGAACCTCAATTTCATCATGGTATCAGAGCGGGTTGTCCTCGTGTGAAGCCAAACGGCCACACGCGCTCCACGTCACCCAGTTGTTGTCCACGTGTAGGCTTGAAAATCCGCCACACGTGCGGGGGCGTGTTGAGAGTTGTCCCACATTGGTGAGGGACAAGGTTTGCTATGTGCTTATATGGTCTTGGGCTACTCCCCATATTGCCAATTGGTTTTATGGTGGAACCTCAATTTCATCAGAGTCTACCTGCTTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

214

Amino Acids

24.55

Weight (kDa)

9.01

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06361
malus_domestica	MD08G1226000.v1.1
pyrus_communis	pycom05g24160
rosa_chinensis	RchiOBHm_Chr2g0159691 RchiOBHm_Chr2g0168161 RchiOBHm_Chr4g0433811 RchiOBHm_Chr5g0018671 RchiOBHm_Chr5g0082331
rosa_multiflora	Rmu_sc0000698.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019890 Rroxscaffold_1G00030050 Rroxscaffold_1G00032950 Rroxscaffold_5G00335810 Rroxscaffold_5G00345660 Rroxscaffold_5G00345670 Rroxscaffold_6G00401880 Rroxscaffold_6G00401890 Rroxscaffold_7G00194550
rosa_rugosa	Rorug04G0046200 Rorug04G0124800 Rorug04G0335500 Rorug04G0429300 Rorug05G0081300 Rorug05G0117900 Rorug05G0181600 Rorug05G0438900 Rorug05G0452900 Rorug05G0506200.1 Rorug06G0093700 Rorug06G0458300 Rorug07G0106200 Rorug07G0121100
rosa_samantha	Rh2DG566900 Rh3CG025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	638
AccBSI	CCGCTC	2 cut(s)	156, 411
AccI	GTMKAC	1 cut(s)	626
AccII	CGCG	1 cut(s)	446
AciI	CCGC	4 cut(s)	154, 411, 491, 502
AclWI	GGATC	1 cut(s)	43
AcoI	YGGCCR	1 cut(s)	437
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	249
AcvI	CACGTG	2 cut(s)	474, 499
AfiI	CCNNNNNNNGG	1 cut(s)	477
AflIII	ACRYGT	2 cut(s)	473, 496
AgsI	TTSAA	2 cut(s)	229, 485
AjiI	CACGTC	2 cut(s)	271, 454
AleI	CACNNNNGTG	2 cut(s)	308, 530
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	1 cut(s)	43
AoxI	GGCC	1 cut(s)	437
ApeKI	GCWGC	1 cut(s)	124
ApoI	RAATTY	1 cut(s)	224
AspA2I	CCTAGG	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	448
AsuHPI	GGTGA	3 cut(s)	322, 448, 544
AsuII	TTCGAA	1 cut(s)	176
AsuNHI	GCTAGC	1 cut(s)	71
AvrII	CCTAGG	1 cut(s)	104
BauI	CACGAG	1 cut(s)	421
BbrPI	CACGTG	2 cut(s)	474, 499
BbsI	GAAGAC	2 cut(s)	70, 242
BbvI	GCAGC	1 cut(s)	136
BceAI	ACGGC	1 cut(s)	452
BciVI	GTATCC	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	15
BfaI	CTAG	2 cut(s)	72, 105
BfuAI	ACCTGC	1 cut(s)	638
BfuI	GTATCC	1 cut(s)	175
BisI	GCNGC	1 cut(s)	125
BlnI	CCTAGG	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	126
BmgBI	CACGTC	2 cut(s)	271, 454
BmiI	GGNNCC	2 cut(s)	385, 607
BmrI	ACTGGG	1 cut(s)	454
BmsI	GCATC	2 cut(s)	127, 189
BmtI	GCTAGC	1 cut(s)	75
BmuI	ACTGGG	1 cut(s)	454
BpiI	GAAGAC	2 cut(s)	70, 242
Bpu14I	TTCGAA	1 cut(s)	176
BsaAI	YACGTR	2 cut(s)	474, 499
BsaJI	CCNNGG	1 cut(s)	104
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	1 cut(s)	477
Bse1I	ACTGG	1 cut(s)	460
BseDI	CCNNGG	1 cut(s)	104
BseLI	CCNNNNNNNGG	1 cut(s)	477
BseNI	ACTGG	1 cut(s)	460
BseXI	GCAGC	1 cut(s)	136
Bsh1236I	CGCG	1 cut(s)	446
BshFI	GGCC	1 cut(s)	439
BslFI	GGGAC	5 cut(s)	233, 285, 329, 507, 551
BslI	CCNNNNNNNGG	1 cut(s)	477
BsmAI	GTCTC	1 cut(s)	15
BsmFI	GGGAC	5 cut(s)	233, 285, 329, 507, 551
BsnI	GGCC	1 cut(s)	439
Bsp119I	TTCGAA	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	4 cut(s)	154, 411, 491, 502
BspANI	GGCC	1 cut(s)	439
BspFNI	CGCG	1 cut(s)	446
BspLI	GGNNCC	2 cut(s)	385, 607
BspMI	ACCTGC	1 cut(s)	638
BspOI	GCTAGC	1 cut(s)	75
BspPI	GGATC	1 cut(s)	43
BspT104I	TTCGAA	1 cut(s)	176
BsrBI	CCGCTC	2 cut(s)	156, 411
BsrI	ACTGG	1 cut(s)	460
BssECI	CCNNGG	1 cut(s)	104
BssMI	GATC	1 cut(s)	48
BssSI	CACGAG	1 cut(s)	421
BssT1I	CCWWGG	1 cut(s)	104
Bst2BI	CACGAG	1 cut(s)	421
Bst4CI	ACNGT	1 cut(s)	213
Bst6I	CTCTTC	1 cut(s)	276
BstBAI	YACGTR	2 cut(s)	474, 499
BstBI	TTCGAA	1 cut(s)	176
BstC8I	GCNNGC	3 cut(s)	73, 150, 154
BstFNI	CGCG	1 cut(s)	446
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 445, 499
BstUI	CGCG	1 cut(s)	446
BstV1I	GCAGC	1 cut(s)	136
BstV2I	GAAGAC	2 cut(s)	70, 242
BsuI	GTATCC	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	439
BtrI	CACGTC	2 cut(s)	271, 454
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	1 cut(s)	209
BveI	ACCTGC	1 cut(s)	638
Cac8I	GCNNGC	3 cut(s)	73, 150, 154
CfoI	GCGC	1 cut(s)	448
CseI	GACGC	1 cut(s)	64
CspCI	CAANNNNNGTGG	2 cut(s)	197, 232
CviAII	CATG	1 cut(s)	399
CviJI	RGCY	8 cut(s)	103, 152, 260, 350, 431, 439, 481, 572
CviKI_1	RGCY	8 cut(s)	103, 152, 260, 350, 431, 439, 481, 572
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	437
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
EciI	GGCGGA	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	249
Eco72I	CACGTG	2 cut(s)	474, 499
EcoRI	GAATTC	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	1 cut(s)	402
FaqI	GGGAC	5 cut(s)	233, 285, 329, 507, 551
FatI	CATG	1 cut(s)	398
FauI	CCCGC	3 cut(s)	161, 404, 495
FblI	GTMKAC	1 cut(s)	626
Fnu4HI	GCNGC	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	125
FspBI	CTAG	2 cut(s)	72, 105
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	439
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	448
Hin1II	CATG	1 cut(s)	402
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HinfI	GANTC	3 cut(s)	238, 284, 623
HphI	GGTGA	3 cut(s)	322, 448, 544
Hpy166II	GTNNAC	2 cut(s)	471, 627
Hpy188I	TCNGA	5 cut(s)	48, 243, 268, 408, 622
Hpy188III	TCNNGA	2 cut(s)	52, 82
Hpy8I	GTNNAC	2 cut(s)	471, 627
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4IV	ACGT	4 cut(s)	270, 453, 473, 498
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 445, 499
HpySE526I	ACGT	4 cut(s)	270, 453, 473, 498
Hsp92II	CATG	1 cut(s)	402
HspAI	GCGC	1 cut(s)	446
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	2 cut(s)	7, 453
LpnPI	CCDG	3 cut(s)	65, 67, 473
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	2 cut(s)	127, 189
MaeI	CTAG	2 cut(s)	72, 105
MaeII	ACGT	4 cut(s)	270, 453, 473, 498
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	1 cut(s)	50
MbiI	CCGCTC	2 cut(s)	156, 411
MboI	GATC	1 cut(s)	48
MboII	GAAGA	5 cut(s)	70, 165, 247, 287, 293
MfeI	CAATTG	2 cut(s)	367, 589
MluCI	AATT	6 cut(s)	94, 224, 367, 390, 589, 612
MlyI	GAGTC	3 cut(s)	232, 293, 632
MnlI	CCTC	6 cut(s)	57, 306, 397, 430, 528, 619
MseI	TTAA	1 cut(s)	640
MslI	CAYNNNNRTG	3 cut(s)	197, 308, 530
MunI	CAATTG	2 cut(s)	367, 589
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	3 cut(s)	158, 445, 499
NdeII	GATC	1 cut(s)	48
NheI	GCTAGC	1 cut(s)	71
NlaIII	CATG	1 cut(s)	402
NlaIV	GGNNCC	2 cut(s)	385, 607
NmuCI	GTSAC	1 cut(s)	454
NspV	TTCGAA	1 cut(s)	176
OliI	CACNNNNGTG	2 cut(s)	308, 530
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PkrI	GCNGC	1 cut(s)	126
PleI	GAGTC	3 cut(s)	232, 292, 631
PmaCI	CACGTG	2 cut(s)	474, 499
PmlI	CACGTG	2 cut(s)	474, 499
PpsI	GAGTC	3 cut(s)	232, 292, 631
Ppu21I	YACGTR	2 cut(s)	474, 499
PspCI	CACGTG	2 cut(s)	474, 499
PspN4I	GGNNCC	2 cut(s)	385, 607
RseI	CAYNNNNRTG	3 cut(s)	197, 308, 530
SaqAI	TTAA	1 cut(s)	640
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	1 cut(s)	48
SchI	GAGTC	3 cut(s)	232, 293, 632
SfaNI	GCATC	2 cut(s)	127, 189
SfuI	TTCGAA	1 cut(s)	176
SmiMI	CAYNNNNRTG	3 cut(s)	197, 308, 530
Sse9I	AATT	6 cut(s)	94, 224, 367, 390, 589, 612
SsiI	CCGC	4 cut(s)	154, 411, 491, 502
SspI	AATATT	1 cut(s)	28
SspMI	CTAG	2 cut(s)	72, 105
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	213
TaiI	ACGT	4 cut(s)	273, 456, 476, 501
TaqI	TCGA	1 cut(s)	176
TasI	AATT	6 cut(s)	94, 224, 367, 390, 589, 612
Tru1I	TTAA	1 cut(s)	640
Tru9I	TTAA	1 cut(s)	640
TscAI	CASTG	1 cut(s)	209
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	4 cut(s)	71, 294, 384, 606
TspRI	CASTG	1 cut(s)	209
XapI	RAATTY	1 cut(s)	224
XmaJI	CCTAGG	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	626
XspI	CTAG	2 cut(s)	72, 105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.