Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003949

Physical Location & Seq

Genomic Coordinates Reverse (-)

3228930 .. 3245591

Gene Structure 16662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00335810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGTTGGAGTCTTGGAGAGCTACCGTGCATTAGGTCCATTTTGGTATACGGAGTGCTATCTCGACATTGATACCAACAAAATAAATTGTGAAGTAGACTGGAATATATCTACAATGAGATTGGCAGATGATGAGATGGTGGGTAGCCTAGAAGATGCGGTAAAAGATGTCTCGGAGGTTGGTGCTGATGGACAAGTAGCAGTTTCAACAGGTGGGGATGAGGCTGACCATGTGAAGTGTGAGAATCACAATTCTAAATCAAATGGAGAAATACCAATTTTGACCGATGTGGACGAGGTTGATGGGAAGCCCGTTGAGGTTGCCGAGAATGAGAAGTTTGAGAAGGACGACCAGGATAACTTGGATAGCTCATGGTTATTTATGTACAACGATAAATTATATAACCAGGCAAAGGCATGCAAGGCCGCTGTATATTCATCAATCACATGTCAGTCTCCTGGACCAGTTTCCATTGTTGCATACTACTACAACAACGAACGGGTAATCCACGTGTGCATGCCTAACGGCCACACAGGCTCCACGCTACCTAAAAGTTCTTCACGTGTATGGCTTGAAAATTCGCCACACATGTGGGAGCGTGTTGAGAATATAAACATCCCATATGGGAAAAATGGGACATTGACTATGGATTGTGTGGAGGAATTTATGAAGGTTGCTTATTCACCTACCTTAGCAAGCTATAACTTCAACTTGCACAACTTGAAGAAAGAAGGTGGTCCGCCTATTGAAGAGTTTCTGCGATCTTTGCCGTTGGAAAAGTGGTGCAATGCATTTTTCAAAGGAAACAACTATGGTGAAATGGCAAATAGTATTGCCGAGTCATTTAACAATTGGACTAGAGATTTGCGTGAGCTTCCTATATTTGAGATATTTGAAGGCTTAAGGTTATGGAGAATATGTCCGAGAGGAAGGTTGCATCCAAGAGCACTTGCTCTTGCCGTCAATGGCAAATTAATTCATTCCAATGTTCACATGCTCTTGCCGCAATCCAAAAGGTTGGAGTGGAACTCGTGTATTGTTACATTGAGCCGTTCTACACCGTCAAAGCTACGGGATTCATCCTATACCAAATATGGAGAAGTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

369

Amino Acids

41.76

Weight (kDa)

5.12

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06361
malus_domestica	MD08G1226000.v1.1
pyrus_communis	pycom05g24160
rosa_chinensis	RchiOBHm_Chr2g0159691 RchiOBHm_Chr2g0168161 RchiOBHm_Chr4g0433811 RchiOBHm_Chr5g0018671 RchiOBHm_Chr5g0082331
rosa_multiflora	Rmu_sc0000698.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019890 Rroxscaffold_1G00030050 Rroxscaffold_1G00032950 Rroxscaffold_5G00335810 Rroxscaffold_5G00345660 Rroxscaffold_5G00345670 Rroxscaffold_6G00401880 Rroxscaffold_6G00401890 Rroxscaffold_7G00194550
rosa_rugosa	Rorug04G0046200 Rorug04G0124800 Rorug04G0335500 Rorug04G0429300 Rorug05G0081300 Rorug05G0117900 Rorug05G0181600 Rorug05G0438900 Rorug05G0452900 Rorug05G0506200.1 Rorug06G0093700 Rorug06G0458300 Rorug07G0106200 Rorug07G0121100
rosa_samantha	Rh2DG566900 Rh3CG025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	47, 96
AciI	CCGC	4 cut(s)	158, 426, 740, 1004
AcoI	YGGCCR	1 cut(s)	526
AcsI	RAATTY	2 cut(s)	577, 662
AcvI	CACGTG	2 cut(s)	511, 563
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	412
AflII	CTTAAG	1 cut(s)	901
AflIII	ACRYGT	4 cut(s)	446, 510, 562, 588
AgsI	TTSAA	7 cut(s)	207, 575, 709, 724, 749, 799, 896
AjnI	CCWGG	3 cut(s)	351, 405, 457
AleI	CACNNNNGTG	1 cut(s)	589
AloI	GAACNNNNNNTCC	2 cut(s)	489, 521
AluBI	AGCT	5 cut(s)	21, 369, 699, 874, 1069
AluI	AGCT	5 cut(s)	21, 369, 699, 874, 1069
Alw21I	GWGCWC	1 cut(s)	949
Alw26I	GTCTC	2 cut(s)	175, 459
AoxI	GGCC	2 cut(s)	423, 526
ApoI	RAATTY	2 cut(s)	577, 662
ArsI	GACNNNNNNTTYG	2 cut(s)	847, 879
AseI	ATTAAT	1 cut(s)	974
Asp700I	GAANNNNTTC	1 cut(s)	753
AspS9I	GGNCC	3 cut(s)	35, 461, 737
AsuHPI	GGTGA	2 cut(s)	675, 827
AvaII	GGWCC	3 cut(s)	35, 461, 737
BauI	CACGAG	1 cut(s)	1030
BbrPI	CACGTG	2 cut(s)	511, 563
Bbv12I	GWGCWC	1 cut(s)	949
BccI	CCATC	3 cut(s)	130, 182, 296
BceAI	ACGGC	4 cut(s)	541, 754, 944, 1035
BciT130I	CCWGG	3 cut(s)	353, 407, 459
BcoDI	GTCTC	2 cut(s)	175, 459
BfaI	CTAG	2 cut(s)	149, 858
BfrI	CTTAAG	1 cut(s)	901
BglI	GCCNNNNNGGC	1 cut(s)	534
BisI	GCNGC	2 cut(s)	426, 1004
BlsI	GCNGC	2 cut(s)	427, 1005
Bme1390I	CCNGG	3 cut(s)	353, 407, 459
Bme18I	GGWCC	3 cut(s)	35, 461, 737
BmgT120I	GGNCC	3 cut(s)	35, 461, 737
BmiI	GGNNCC	1 cut(s)	538
BmrFI	CCNGG	3 cut(s)	353, 407, 459
BmsI	GCATC	2 cut(s)	145, 946
BplI	GAGNNNNNCTC	2 cut(s)	1013, 1045
Bpu10I	CCTNAGC	1 cut(s)	691
BsaAI	YACGTR	2 cut(s)	511, 563
BsaXI	ACNNNNNCTCC	4 cut(s)	521, 551, 904, 934
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse1I	ACTGG	2 cut(s)	104, 464
Bse3DI	GCAATG	1 cut(s)	793
BseBI	CCWGG	3 cut(s)	353, 407, 459
BseGI	GGATG	4 cut(s)	223, 615, 937, 1079
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMI	GCAATG	1 cut(s)	793
BseNI	ACTGG	2 cut(s)	104, 464
BshFI	GGCC	2 cut(s)	425, 528
BsiHKAI	GWGCWC	1 cut(s)	949
BslFI	GGGAC	1 cut(s)	649
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	2 cut(s)	175, 459
BsmFI	GGGAC	1 cut(s)	649
BsnI	GGCC	2 cut(s)	425, 528
Bsp1286I	GDGCHC	1 cut(s)	949
Bsp1407I	TGTACA	1 cut(s)	384
Bsp143I	GATC	1 cut(s)	761
BspACI	CCGC	4 cut(s)	158, 426, 740, 1004
BspANI	GGCC	2 cut(s)	425, 528
BspLI	GGNNCC	1 cut(s)	538
BspTI	CTTAAG	1 cut(s)	901
BsrDI	GCAATG	1 cut(s)	793
BsrGI	TGTACA	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	104, 464
BssMI	GATC	1 cut(s)	761
BssNAI	GTATAC	1 cut(s)	48
BssSI	CACGAG	1 cut(s)	1030
Bst1107I	GTATAC	1 cut(s)	48
Bst2BI	CACGAG	1 cut(s)	1030
Bst2UI	CCWGG	3 cut(s)	353, 407, 459
Bst4CI	ACNGT	2 cut(s)	26, 1062
Bst6I	CTCTTC	1 cut(s)	744
BstAFI	CTTAAG	1 cut(s)	901
BstAUI	TGTACA	1 cut(s)	384
BstBAI	YACGTR	2 cut(s)	511, 563
BstC8I	GCNNGC	3 cut(s)	418, 518, 697
BstDEI	CTNAG	1 cut(s)	691
BstF5I	GGATG	4 cut(s)	223, 615, 937, 1079
BstKTI	GATC	1 cut(s)	764
BstMAI	GTCTC	2 cut(s)	175, 459
BstMBI	GATC	1 cut(s)	761
BstMWI	GCNNNNNNNGC	4 cut(s)	422, 534, 766, 1003
BstNI	CCWGG	3 cut(s)	353, 407, 459
BstNSI	RCATGY	5 cut(s)	420, 450, 520, 592, 997
BstSCI	CCNGG	3 cut(s)	351, 405, 457
BstXI	CCANNNNNNTGG	2 cut(s)	591, 1018
BstZ17I	GTATAC	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	425, 528
BtsCI	GGATG	4 cut(s)	223, 615, 937, 1079
Cac8I	GCNNGC	3 cut(s)	418, 518, 697
Cfr13I	GGNCC	3 cut(s)	35, 461, 737
Csp6I	GTAC	1 cut(s)	385
CviAII	CATG	7 cut(s)	230, 372, 417, 447, 517, 589, 994
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	1 cut(s)	691
DpnI	GATC	1 cut(s)	763
DpnII	GATC	1 cut(s)	761
EaeI	YGGCCR	1 cut(s)	526
Eam1104I	CTCTTC	1 cut(s)	744
EarI	CTCTTC	1 cut(s)	744
EciI	GGCGGA	1 cut(s)	729
Eco47I	GGWCC	3 cut(s)	35, 461, 737
Eco72I	CACGTG	2 cut(s)	511, 563
EcoRII	CCWGG	3 cut(s)	351, 405, 457
EcoT22I	ATGCAT	1 cut(s)	793
FaeI	CATG	7 cut(s)	233, 375, 420, 450, 520, 592, 997
FaqI	GGGAC	1 cut(s)	649
FatI	CATG	7 cut(s)	229, 371, 416, 446, 516, 588, 993
FauNDI	CATATG	1 cut(s)	622
FblI	GTMKAC	2 cut(s)	47, 96
Fnu4HI	GCNGC	2 cut(s)	426, 1004
FokI	GGATG	4 cut(s)	230, 602, 924, 1066
Fsp4HI	GCNGC	2 cut(s)	426, 1004
FspBI	CTAG	2 cut(s)	149, 858
GluI	GCNGC	2 cut(s)	426, 1004
HaeIII	GGCC	2 cut(s)	425, 528
Hin1II	CATG	7 cut(s)	233, 375, 420, 450, 520, 592, 997
HinfI	GANTC	4 cut(s)	9, 244, 839, 1076
HphI	GGTGA	2 cut(s)	675, 827
Hpy166II	GTNNAC	4 cut(s)	48, 97, 292, 991
Hpy188I	TCNGA	2 cut(s)	175, 924
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	4 cut(s)	48, 97, 292, 991
HpyAV	CCTTC	5 cut(s)	337, 664, 725, 890, 924
HpyCH4III	ACNGT	2 cut(s)	26, 1062
HpyCH4IV	ACGT	2 cut(s)	510, 562
HpyCH4V	TGCA	8 cut(s)	29, 420, 479, 516, 715, 786, 791, 937
HpyF10VI	GCNNNNNNNGC	4 cut(s)	422, 534, 766, 1003
HpyF3I	CTNAG	1 cut(s)	691
HpySE526I	ACGT	2 cut(s)	510, 562
Hsp92II	CATG	7 cut(s)	233, 375, 420, 450, 520, 592, 997
Kzo9I	GATC	1 cut(s)	761
LmnI	GCTCC	2 cut(s)	542, 595
LweI	GCATC	2 cut(s)	145, 946
MaeI	CTAG	2 cut(s)	149, 858
MaeII	ACGT	2 cut(s)	510, 562
MaeIII	GTNAC	1 cut(s)	1039
MalI	GATC	1 cut(s)	763
MboI	GATC	1 cut(s)	761
MboII	GAAGA	4 cut(s)	164, 549, 736, 761
MfeI	CAATTG	1 cut(s)	850
MhlI	GDGCHC	1 cut(s)	949
MluCI	AATT	9 cut(s)	85, 250, 276, 395, 577, 662, 850, 971, 975
MlyI	GAGTC	2 cut(s)	18, 848
MmeI	TCCRAC	2 cut(s)	753, 999
MnlI	CCTC	6 cut(s)	169, 214, 289, 310, 652, 920
Mph1103I	ATGCAT	1 cut(s)	793
MroXI	GAANNNNTTC	1 cut(s)	753
MseI	TTAA	3 cut(s)	846, 902, 974
MslI	CAYNNNNRTG	3 cut(s)	565, 589, 984
MspA1I	CMGCKG	1 cut(s)	428
MspCI	CTTAAG	1 cut(s)	901
MspR9I	CCNGG	3 cut(s)	353, 407, 459
MunI	CAATTG	1 cut(s)	850
MvaI	CCWGG	3 cut(s)	353, 407, 459
MwoI	GCNNNNNNNGC	4 cut(s)	422, 534, 766, 1003
NdeI	CATATG	1 cut(s)	622
NdeII	GATC	1 cut(s)	761
NlaIII	CATG	7 cut(s)	233, 375, 420, 450, 520, 592, 997
NlaIV	GGNNCC	1 cut(s)	538
NmeAIII	GCCGAG	2 cut(s)	349, 862
NsiI	ATGCAT	1 cut(s)	793
NspI	RCATGY	5 cut(s)	420, 450, 520, 592, 997
OliI	CACNNNNGTG	1 cut(s)	589
PaeI	GCATGC	2 cut(s)	420, 520
PciI	ACATGT	2 cut(s)	446, 588
PdmI	GAANNNNTTC	1 cut(s)	753
PfeI	GAWTC	2 cut(s)	244, 1076
PfoI	TCCNGGA	1 cut(s)	457
PkrI	GCNGC	2 cut(s)	427, 1005
PleI	GAGTC	2 cut(s)	17, 847
PmaCI	CACGTG	2 cut(s)	511, 563
PmlI	CACGTG	2 cut(s)	511, 563
PpsI	GAGTC	2 cut(s)	17, 847
Ppu21I	YACGTR	2 cut(s)	511, 563
PscI	ACATGT	2 cut(s)	446, 588
PshBI	ATTAAT	1 cut(s)	974
Psp6I	CCWGG	3 cut(s)	351, 405, 457
PspCI	CACGTG	2 cut(s)	511, 563
PspGI	CCWGG	3 cut(s)	351, 405, 457
PspN4I	GGNNCC	1 cut(s)	538
PspPI	GGNCC	3 cut(s)	35, 461, 737
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
RseI	CAYNNNNRTG	3 cut(s)	565, 589, 984
SaqAI	TTAA	3 cut(s)	846, 902, 974
SatI	GCNGC	2 cut(s)	426, 1004
Sau3AI	GATC	1 cut(s)	761
Sau96I	GGNCC	3 cut(s)	35, 461, 737
SchI	GAGTC	2 cut(s)	18, 848
ScrFI	CCNGG	3 cut(s)	353, 407, 459
SduI	GDGCHC	1 cut(s)	949
SfaNI	GCATC	2 cut(s)	145, 946
SinI	GGWCC	3 cut(s)	35, 461, 737
SmiMI	CAYNNNNRTG	3 cut(s)	565, 589, 984
SmlI	CTYRAG	1 cut(s)	901
SmoI	CTYRAG	1 cut(s)	901
SphI	GCATGC	2 cut(s)	420, 520
Sse9I	AATT	9 cut(s)	85, 250, 276, 395, 577, 662, 850, 971, 975
SsiI	CCGC	4 cut(s)	158, 426, 740, 1004
SspMI	CTAG	2 cut(s)	149, 858
StyD4I	CCNGG	3 cut(s)	351, 405, 457
TaaI	ACNGT	2 cut(s)	26, 1062
TaiI	ACGT	2 cut(s)	513, 565
TaqI	TCGA	1 cut(s)	63
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	9 cut(s)	85, 250, 276, 395, 577, 662, 850, 971, 975
TatI	WGTACW	1 cut(s)	384
TauI	GCSGC	2 cut(s)	428, 1006
TfiI	GAWTC	2 cut(s)	244, 1076
Tru1I	TTAA	3 cut(s)	846, 902, 974
Tru9I	TTAA	3 cut(s)	846, 902, 974
TspDTI	ATGAA	4 cut(s)	426, 683, 968, 1068
TspGWI	ACGGA	1 cut(s)	65
Vha464I	CTTAAG	1 cut(s)	901
VpaK11BI	GGWCC	3 cut(s)	35, 461, 737
VspI	ATTAAT	1 cut(s)	974
XapI	RAATTY	2 cut(s)	577, 662
XceI	RCATGY	5 cut(s)	420, 450, 520, 592, 997
XmiI	GTMKAC	2 cut(s)	47, 96
XmnI	GAANNNNTTC	1 cut(s)	753
XspI	CTAG	2 cut(s)	149, 858
Zsp2I	ATGCAT	1 cut(s)	793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.