Rorug04G0124800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003949
Physical Location & Seq
Reverse (-)
19767978 .. 19768515
538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0124800.1

Sequence Viewer

Length: 408 bp
ATGAAAACATTAAAAGGATATGTTAGGAACCGTAACCATCCAGAAGGTTGCATTGCTGAATCATACATCGCCGAAGAAGCAGTAGAGTTTTTGACAGAACGTAATCTAACTGAACCTACTGTTGGACTACCATCTAGCAGTACATCTGACCAGAAGGGGACGTGCAGACCTTTGTCAGGTGCCACAATGATCTGTCCAAATCAAAAGAAGTTGCAGCTAGCACATCTTTGTGTGTTGTTTTGCATTTTTCTTGTCTTTTGTAGTGAACATTTGGAATGGTTGAAGCATGTTTATCCAAAATTTAAAAAAAATAAGAAGTGGCTAAAGGAGAAGCAGAATAAAACATTTGCGAAATGGATACAAGACAAGGTAAGTACAATGATCTGTTTATTCCAGTACCTTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.66

Weight (kDa)

9.2

Isoelectric Point (pI)

32.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4218 PF13960 2 - 32 6.6e-08 Domain of unknown function (DUF4218)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AcsI RAATTY 1 cut(s) 299
AfaI GTAC 3 cut(s) 142, 376, 398
AfiI CCNNNNNNNGG 2 cut(s) 122, 176
AgsI TTSAA 1 cut(s) 283
AjiI CACGTC 1 cut(s) 162
AjuI GAANNNNNNNTTGG 2 cut(s) 105, 137
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
ApeKI GCWGC 1 cut(s) 214
ApoI RAATTY 1 cut(s) 299
AsuNHI GCTAGC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 226
BccI CCATC 2 cut(s) 45, 139
BciVI GTATCC 1 cut(s) 351
BfaI CTAG 2 cut(s) 135, 218
BfuI GTATCC 1 cut(s) 351
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
BmgBI CACGTC 1 cut(s) 162
BmiI GGNNCC 2 cut(s) 29, 181
BmtI GCTAGC 1 cut(s) 221
BoxI GACNNNNGTC 1 cut(s) 172
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 176
Bse1I ACTGG 1 cut(s) 394
Bse3DI GCAATG 1 cut(s) 51
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 2 cut(s) 122, 176
BseMI GCAATG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 394
BseXI GCAGC 1 cut(s) 226
BsgI GTGCAG 1 cut(s) 184
BshNI GGYRCC 1 cut(s) 179
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 2 cut(s) 122, 176
BsmFI GGGAC 1 cut(s) 172
Bsp143I GATC 2 cut(s) 189, 381
BspLI GGNNCC 2 cut(s) 29, 181
BspOI GCTAGC 1 cut(s) 221
BspT107I GGYRCC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 51
BsrI ACTGG 1 cut(s) 394
BssMI GATC 2 cut(s) 189, 381
Bst4CI ACNGT 2 cut(s) 32, 121
BstC8I GCNNGC 1 cut(s) 219
BstENI CCTNNNNNAGG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 2 cut(s) 192, 384
BstMBI GATC 2 cut(s) 189, 381
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNSI RCATGY 1 cut(s) 290
BstPAI GACNNNNGTC 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 226
BsuI GTATCC 1 cut(s) 351
BtgZI GCGATG 1 cut(s) 52
BtrI CACGTC 1 cut(s) 162
BtsCI GGATG 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 219
Csp6I GTAC 3 cut(s) 141, 375, 397
CviAII CATG 1 cut(s) 287
CviJI RGCY 2 cut(s) 217, 322
CviKI_1 RGCY 2 cut(s) 217, 322
CviQI GTAC 3 cut(s) 141, 375, 397
DpnI GATC 2 cut(s) 191, 383
DpnII GATC 2 cut(s) 189, 381
DraI TTTAAA 1 cut(s) 304
EcoNI CCTNNNNNAGG 1 cut(s) 174
FaeI CATG 1 cut(s) 290
FaiI YATR 4 cut(s) 21, 64, 288, 406
FaqI GGGAC 1 cut(s) 172
FatI CATG 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 215
FokI GGATG 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 2 cut(s) 135, 218
GluI GCNGC 1 cut(s) 215
Hin1II CATG 1 cut(s) 290
HinfI GANTC 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 266
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 41
Hpy8I GTNNAC 1 cut(s) 266
HpyAV CCTTC 2 cut(s) 38, 148
HpyCH4III ACNGT 2 cut(s) 32, 121
HpyCH4IV ACGT 2 cut(s) 100, 161
HpyCH4V TGCA 4 cut(s) 51, 165, 214, 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpySE526I ACGT 2 cut(s) 100, 161
Hsp92II CATG 1 cut(s) 290
Kzo9I GATC 2 cut(s) 189, 381
LpnPI CCDG 3 cut(s) 54, 162, 164
Lsp1109I GCAGC 1 cut(s) 226
MaeI CTAG 2 cut(s) 135, 218
MaeII ACGT 2 cut(s) 100, 161
MaeIII GTNAC 1 cut(s) 32
MalI GATC 2 cut(s) 191, 383
MboI GATC 2 cut(s) 189, 381
MboII GAAGA 1 cut(s) 86
MluCI AATT 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 103
MseI TTAA 2 cut(s) 11, 303
MslI CAYNNNNRTG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 2 cut(s) 189, 381
NheI GCTAGC 1 cut(s) 217
NlaIII CATG 1 cut(s) 290
NlaIV GGNNCC 2 cut(s) 29, 181
NspI RCATGY 1 cut(s) 290
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 1 cut(s) 216
PshAI GACNNNNGTC 1 cut(s) 172
PspN4I GGNNCC 2 cut(s) 29, 181
RsaI GTAC 3 cut(s) 142, 376, 398
RsaNI GTAC 3 cut(s) 141, 375, 397
RseI CAYNNNNRTG 1 cut(s) 228
SaqAI TTAA 2 cut(s) 11, 303
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 2 cut(s) 189, 381
SetI ASST 9 cut(s) 49, 103, 118, 164, 172, 181, 219, 372, 402
SmiMI CAYNNNNRTG 1 cut(s) 228
Sse9I AATT 1 cut(s) 299
SspMI CTAG 2 cut(s) 135, 218
TaaI ACNGT 2 cut(s) 32, 121
TaiI ACGT 2 cut(s) 103, 164
TasI AATT 1 cut(s) 299
TatI WGTACW 2 cut(s) 140, 374
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 2 cut(s) 11, 303
Tru9I TTAA 2 cut(s) 11, 303
TseI GCWGC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 174
XapI RAATTY 1 cut(s) 299
XceI RCATGY 1 cut(s) 290
XspI CTAG 2 cut(s) 135, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.