Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003949

Physical Location & Seq

Genomic Coordinates Reverse (-)

24273711 .. 24280084

Gene Structure 6374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00401880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTGTGTGCTTGGAATTGGACAGAATGGTATCAAAGCTGTGCAGGGTAACGGTTTCAATTTTATTTTTGATGGATCATCTCGGCGCTACTCCCGGAATCCTTCGATCACCGGCCACCGCAGCGAGCTCAAGTCGCTACTAGACCCGAGATCTGCCGCCAAACAAGTAGGAAGTTGCGGGAGCGTCTCGTTACTTACCGGAGAAGGTAGTACTCTCCGACGCAGCGACAATTTGGTTAGGGCCTTCAAACGCCGCTACGATGCCATCACCTTCGGCTCTTCTTATCGAAAACAGCTACTCTCATTGACTTGGTGGAAGACAGCATTGACTCACCGGAACGGATACTCGATCTCTCATCTTTTCTTAGTGCTGCCAAATGCTACTTCCTCTATGCGATTCGGCTTCCTTTGGGGACTTTCTGGATGTGATCTTGGAAGTGTGATGTTAGAATCCAATGTCCATCTTTCCGGCACAAAGAAGAGGAAAAGAGGGGCTCGAGCTGCAAGAAGTGGATTGAAGGAATGGGAAAGTAGTGTCATCGGTGGTATTTTTGGTCTTGCAATAAGTAGTTGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010035 GO:0010038 GO:0010043 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

192

Amino Acids

20.9

Weight (kDa)

10.64

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06361
malus_domestica	MD08G1226000.v1.1
pyrus_communis	pycom05g24160
rosa_chinensis	RchiOBHm_Chr2g0159691 RchiOBHm_Chr2g0168161 RchiOBHm_Chr4g0433811 RchiOBHm_Chr5g0018671 RchiOBHm_Chr5g0082331
rosa_multiflora	Rmu_sc0000698.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019890 Rroxscaffold_1G00030050 Rroxscaffold_1G00032950 Rroxscaffold_5G00335810 Rroxscaffold_5G00345660 Rroxscaffold_5G00345670 Rroxscaffold_6G00401880 Rroxscaffold_6G00401890 Rroxscaffold_7G00194550
rosa_rugosa	Rorug04G0046200 Rorug04G0124800 Rorug04G0335500 Rorug04G0429300 Rorug05G0081300 Rorug05G0117900 Rorug05G0181600 Rorug05G0438900 Rorug05G0452900 Rorug05G0506200.1 Rorug06G0093700 Rorug06G0458300 Rorug07G0106200 Rorug07G0121100
rosa_samantha	Rh2DG566900 Rh3CG025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	118, 156, 177, 253
AclWI	GGATC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	112
AfaI	GTAC	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	58, 247, 517
AjuI	GAANNNNNNNTTGG	2 cut(s)	367, 399
AluBI	AGCT	4 cut(s)	38, 127, 295, 500
AluI	AGCT	4 cut(s)	38, 127, 295, 500
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	82
Ama87I	CYCGRG	2 cut(s)	145, 495
AoxI	GGCC	2 cut(s)	112, 240
ApeKI	GCWGC	4 cut(s)	120, 222, 370, 500
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	240
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	3 cut(s)	100, 259, 323
AvaI	CYCGRG	2 cut(s)	145, 495
BanII	GRGCYC	2 cut(s)	129, 496
BbsI	GAAGAC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	4 cut(s)	132, 234, 357, 487
BccI	CCATC	3 cut(s)	65, 272, 468
BciVI	GTATCC	1 cut(s)	335
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	140
BfoI	RGCGCY	1 cut(s)	88
BfuI	GTATCC	1 cut(s)	335
BglII	AGATCT	1 cut(s)	149
BisI	GCNGC	6 cut(s)	121, 156, 223, 253, 371, 501
BlsI	GCNGC	6 cut(s)	122, 157, 224, 254, 372, 502
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	1 cut(s)	94
BmeT110I	CYCGRG	2 cut(s)	145, 495
BmgT120I	GGNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	323
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	94
BsaWI	WCCGGW	2 cut(s)	197, 333
Bse118I	RCCGGY	1 cut(s)	110
BseGI	GGATG	1 cut(s)	428
BseXI	GCAGC	4 cut(s)	132, 234, 357, 487
BsgI	GTGCAG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	114, 242
BsiHKAI	GWGCWC	1 cut(s)	129
BsiHKCI	CYCGRG	2 cut(s)	145, 495
BsiSI	CCGG	5 cut(s)	94, 111, 198, 334, 468
BslFI	GGGAC	1 cut(s)	426
BsmAI	GTCTC	1 cut(s)	190
BsmBI	CGTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	426
BsnI	GGCC	2 cut(s)	114, 242
BsoBI	CYCGRG	2 cut(s)	145, 495
Bsp1286I	GDGCHC	2 cut(s)	129, 496
Bsp143I	GATC	5 cut(s)	74, 105, 149, 348, 427
BspACI	CCGC	4 cut(s)	118, 156, 177, 253
BspANI	GGCC	2 cut(s)	114, 242
BspPI	GGATC	1 cut(s)	82
BspQI	GCTCTTC	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssMI	GATC	5 cut(s)	74, 105, 149, 348, 427
Bst4CI	ACNGT	1 cut(s)	53
Bst6I	CTCTTC	2 cut(s)	283, 473
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	364
BstF5I	GGATG	1 cut(s)	428
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	5 cut(s)	77, 108, 152, 351, 430
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	5 cut(s)	74, 105, 149, 348, 427
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 133, 500
BstSCI	CCNGG	1 cut(s)	92
BstV1I	GCAGC	4 cut(s)	132, 234, 357, 487
BstV2I	GAAGAC	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
BsuI	GTATCC	1 cut(s)	335
BsuRI	GGCC	2 cut(s)	114, 242
BtsCI	GGATG	1 cut(s)	428
Cac8I	GCNNGC	1 cut(s)	125
CfoI	GCGC	1 cut(s)	87
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	240
CseI	GACGC	2 cut(s)	172, 228
Csp6I	GTAC	1 cut(s)	210
CviJI	RGCY	9 cut(s)	38, 114, 127, 242, 276, 295, 402, 494, 500
CviKI_1	RGCY	9 cut(s)	38, 114, 127, 242, 276, 295, 402, 494, 500
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	1 cut(s)	364
DpnI	GATC	5 cut(s)	76, 107, 151, 350, 429
DpnII	GATC	5 cut(s)	74, 105, 149, 348, 427
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	283, 473
EarI	CTCTTC	2 cut(s)	283, 473
Ecl136II	GAGCTC	1 cut(s)	127
Eco24I	GRGCYC	2 cut(s)	129, 496
Eco53kI	GAGCTC	1 cut(s)	127
Eco88I	CYCGRG	2 cut(s)	145, 495
EcoICRI	GAGCTC	1 cut(s)	127
EcoO109I	RGGNCCY	1 cut(s)	240
EcoT38I	GRGCYC	2 cut(s)	129, 496
Esp3I	CGTCTC	1 cut(s)	190
FaiI	YATR	1 cut(s)	392
FaqI	GGGAC	1 cut(s)	426
FauI	CCCGC	1 cut(s)	170
Fnu4HI	GCNGC	6 cut(s)	121, 156, 223, 253, 371, 501
FokI	GGATG	1 cut(s)	435
FriOI	GRGCYC	2 cut(s)	129, 496
Fsp4HI	GCNGC	6 cut(s)	121, 156, 223, 253, 371, 501
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	6 cut(s)	121, 156, 223, 253, 371, 501
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	2 cut(s)	114, 242
HapII	CCGG	5 cut(s)	94, 111, 198, 334, 468
HgaI	GACGC	2 cut(s)	172, 228
HhaI	GCGC	1 cut(s)	87
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HinfI	GANTC	4 cut(s)	97, 328, 396, 449
HpaII	CCGG	5 cut(s)	94, 111, 198, 334, 468
HphI	GGTGA	3 cut(s)	100, 259, 323
Hpy188I	TCNGA	1 cut(s)	218
Hpy188III	TCNNGA	2 cut(s)	420, 576
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	5 cut(s)	111, 197, 253, 280, 511
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4V	TGCA	3 cut(s)	43, 503, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 133, 500
HpyF3I	CTNAG	1 cut(s)	364
HspAI	GCGC	1 cut(s)	85
Kzo9I	GATC	5 cut(s)	74, 105, 149, 348, 427
LguI	GCTCTTC	1 cut(s)	283
LmnI	GCTCC	1 cut(s)	180
LpnPI	CCDG	7 cut(s)	29, 107, 124, 211, 347, 405, 481
Lsp1109I	GCAGC	4 cut(s)	132, 234, 357, 487
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	140
MaeIII	GTNAC	2 cut(s)	47, 189
MalI	GATC	5 cut(s)	76, 107, 151, 350, 429
MboI	GATC	5 cut(s)	74, 105, 149, 348, 427
MboII	GAAGA	3 cut(s)	270, 328, 490
MflI	RGATCY	1 cut(s)	149
MhlI	GDGCHC	2 cut(s)	129, 496
MluCI	AATT	3 cut(s)	15, 58, 229
MlyI	GAGTC	1 cut(s)	322
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	3 cut(s)	397, 474, 482
MspI	CCGG	5 cut(s)	94, 111, 198, 334, 468
MspR9I	CCNGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	3 cut(s)	120, 133, 500
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	5 cut(s)	74, 105, 149, 348, 427
NmeAIII	GCCGAG	1 cut(s)	61
PaeR7I	CTCGAG	1 cut(s)	495
PciSI	GCTCTTC	1 cut(s)	283
PfeI	GAWTC	3 cut(s)	97, 396, 449
PfoI	TCCNGGA	1 cut(s)	92
PkrI	GCNGC	6 cut(s)	122, 157, 224, 254, 372, 502
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Psp124BI	GAGCTC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	240
PspXI	VCTCGAGB	1 cut(s)	495
PsuI	RGATCY	1 cut(s)	149
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SacI	GAGCTC	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	283
SatI	GCNGC	6 cut(s)	121, 156, 223, 253, 371, 501
Sau3AI	GATC	5 cut(s)	74, 105, 149, 348, 427
Sau96I	GGNCC	1 cut(s)	240
ScaI	AGTACT	1 cut(s)	211
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	2 cut(s)	129, 496
SetI	ASST	6 cut(s)	40, 129, 208, 272, 297, 502
SfaNI	GCATC	1 cut(s)	250
Sfr274I	CTCGAG	1 cut(s)	495
SlaI	CTCGAG	1 cut(s)	495
SmlI	CTYRAG	2 cut(s)	128, 495
SmoI	CTYRAG	2 cut(s)	128, 495
Sse9I	AATT	3 cut(s)	15, 58, 229
SsiI	CCGC	4 cut(s)	118, 156, 177, 253
SspMI	CTAG	1 cut(s)	140
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	53
TaqI	TCGA	4 cut(s)	104, 286, 347, 496
TasI	AATT	3 cut(s)	15, 58, 229
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	2 cut(s)	158, 255
TfiI	GAWTC	3 cut(s)	97, 396, 449
TseI	GCWGC	4 cut(s)	120, 222, 370, 500
TspGWI	ACGGA	1 cut(s)	354
XhoI	CTCGAG	1 cut(s)	495
XspI	CTAG	1 cut(s)	140
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.