basic region leucin zipper
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g06361 |
| malus_domestica | MD08G1226000.v1.1 |
| pyrus_communis | pycom05g24160 |
| rosa_chinensis | RchiOBHm_Chr2g0159691 RchiOBHm_Chr2g0168161 RchiOBHm_Chr4g0433811 RchiOBHm_Chr5g0018671 RchiOBHm_Chr5g0082331 |
| rosa_multiflora | Rmu_sc0000698.1_g000050 |
| rosa_roxburghii | Rroxscaffold_1G00019890 Rroxscaffold_1G00030050 Rroxscaffold_1G00032950 Rroxscaffold_5G00335810 Rroxscaffold_5G00345660 Rroxscaffold_5G00345670 Rroxscaffold_6G00401880 Rroxscaffold_6G00401890 Rroxscaffold_7G00194550 |
| rosa_rugosa | Rorug04G0046200 Rorug04G0124800 Rorug04G0335500 Rorug04G0429300 Rorug05G0081300 Rorug05G0117900 Rorug05G0181600 Rorug05G0438900 Rorug05G0452900 Rorug05G0506200.1 Rorug06G0093700 Rorug06G0458300 Rorug07G0106200 Rorug07G0121100 |
| rosa_samantha | Rh2DG566900 Rh3CG025900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 122 |
| AcoI | YGGCCR | 1 cut(s) | 55 |
| AluBI | AGCT | 1 cut(s) | 212 |
| AluI | AGCT | 1 cut(s) | 212 |
| AlwI | GGATC | 1 cut(s) | 122 |
| Ama87I | CYCGRG | 1 cut(s) | 207 |
| AoxI | GGCC | 1 cut(s) | 55 |
| ApeKI | GCWGC | 2 cut(s) | 212, 215 |
| AvaI | CYCGRG | 1 cut(s) | 207 |
| BalI | TGGCCA | 1 cut(s) | 57 |
| BanII | GRGCYC | 1 cut(s) | 208 |
| BbvI | GCAGC | 1 cut(s) | 199 |
| BccI | CCATC | 2 cut(s) | 102, 180 |
| BceAI | ACGGC | 1 cut(s) | 196 |
| BfmI | CTRYAG | 1 cut(s) | 213 |
| BisI | GCNGC | 2 cut(s) | 213, 216 |
| BlsI | GCNGC | 2 cut(s) | 214, 217 |
| BmeT110I | CYCGRG | 1 cut(s) | 207 |
| BsaJI | CCNNGG | 1 cut(s) | 58 |
| BseDI | CCNNGG | 1 cut(s) | 58 |
| BseGI | GGATG | 2 cut(s) | 113, 140 |
| BseXI | GCAGC | 1 cut(s) | 199 |
| BsgI | GTGCAG | 1 cut(s) | 63 |
| BshFI | GGCC | 1 cut(s) | 57 |
| BsiHKCI | CYCGRG | 1 cut(s) | 207 |
| BslFI | GGGAC | 1 cut(s) | 138 |
| BsmFI | GGGAC | 1 cut(s) | 138 |
| BsnI | GGCC | 1 cut(s) | 57 |
| BsoBI | CYCGRG | 1 cut(s) | 207 |
| Bsp1286I | GDGCHC | 1 cut(s) | 208 |
| Bsp143I | GATC | 2 cut(s) | 114, 139 |
| BspANI | GGCC | 1 cut(s) | 57 |
| BspMAI | CTGCAG | 1 cut(s) | 217 |
| BspPI | GGATC | 1 cut(s) | 122 |
| BssECI | CCNNGG | 1 cut(s) | 58 |
| BssMI | GATC | 2 cut(s) | 114, 139 |
| BssT1I | CCWWGG | 1 cut(s) | 58 |
| Bst6I | CTCTTC | 1 cut(s) | 185 |
| BstF5I | GGATG | 2 cut(s) | 113, 140 |
| BstKTI | GATC | 2 cut(s) | 117, 142 |
| BstMBI | GATC | 2 cut(s) | 114, 139 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 212 |
| BstSFI | CTRYAG | 1 cut(s) | 213 |
| BstV1I | GCAGC | 1 cut(s) | 199 |
| BsuRI | GGCC | 1 cut(s) | 57 |
| BtsCI | GGATG | 2 cut(s) | 113, 140 |
| BtsI | GCAGTG | 2 cut(s) | 51, 225 |
| BtsIMutI | CAGTG | 2 cut(s) | 51, 225 |
| CviJI | RGCY | 4 cut(s) | 57, 64, 206, 212 |
| CviKI_1 | RGCY | 4 cut(s) | 57, 64, 206, 212 |
| DpnI | GATC | 2 cut(s) | 116, 141 |
| DpnII | GATC | 2 cut(s) | 114, 139 |
| EaeI | YGGCCR | 1 cut(s) | 55 |
| Eam1104I | CTCTTC | 1 cut(s) | 185 |
| EarI | CTCTTC | 1 cut(s) | 185 |
| Eco130I | CCWWGG | 1 cut(s) | 58 |
| Eco24I | GRGCYC | 1 cut(s) | 208 |
| Eco88I | CYCGRG | 1 cut(s) | 207 |
| EcoT14I | CCWWGG | 1 cut(s) | 58 |
| EcoT38I | GRGCYC | 1 cut(s) | 208 |
| ErhI | CCWWGG | 1 cut(s) | 58 |
| FaqI | GGGAC | 1 cut(s) | 138 |
| Fnu4HI | GCNGC | 2 cut(s) | 213, 216 |
| FokI | GGATG | 2 cut(s) | 120, 147 |
| FriOI | GRGCYC | 1 cut(s) | 208 |
| Fsp4HI | GCNGC | 2 cut(s) | 213, 216 |
| GluI | GCNGC | 2 cut(s) | 213, 216 |
| HaeIII | GGCC | 1 cut(s) | 57 |
| HinfI | GANTC | 2 cut(s) | 84, 161 |
| Hpy188III | TCNNGA | 2 cut(s) | 105, 132 |
| HpyCH4V | TGCA | 2 cut(s) | 44, 215 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 212 |
| Kzo9I | GATC | 2 cut(s) | 114, 139 |
| LpnPI | CCDG | 1 cut(s) | 117 |
| Lsp1109I | GCAGC | 1 cut(s) | 199 |
| MalI | GATC | 2 cut(s) | 116, 141 |
| MboI | GATC | 2 cut(s) | 114, 139 |
| MboII | GAAGA | 2 cut(s) | 79, 202 |
| MhlI | GDGCHC | 1 cut(s) | 208 |
| MlsI | TGGCCA | 1 cut(s) | 57 |
| MluCI | AATT | 2 cut(s) | 15, 77 |
| MluNI | TGGCCA | 1 cut(s) | 57 |
| MnlI | CCTC | 2 cut(s) | 186, 194 |
| Mox20I | TGGCCA | 1 cut(s) | 57 |
| MscI | TGGCCA | 1 cut(s) | 57 |
| Msp20I | TGGCCA | 1 cut(s) | 57 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 212 |
| NdeII | GATC | 2 cut(s) | 114, 139 |
| PaeR7I | CTCGAG | 1 cut(s) | 207 |
| PfeI | GAWTC | 2 cut(s) | 84, 161 |
| PkrI | GCNGC | 2 cut(s) | 214, 217 |
| PspXI | VCTCGAGB | 1 cut(s) | 207 |
| PstI | CTGCAG | 1 cut(s) | 217 |
| SatI | GCNGC | 2 cut(s) | 213, 216 |
| Sau3AI | GATC | 2 cut(s) | 114, 139 |
| SduI | GDGCHC | 1 cut(s) | 208 |
| SetI | ASST | 1 cut(s) | 214 |
| SfcI | CTRYAG | 1 cut(s) | 213 |
| Sfr274I | CTCGAG | 1 cut(s) | 207 |
| SgeI | CNNG | 8 cut(s) | 23, 71, 103, 117, 144, 155, 219, 221 |
| SlaI | CTCGAG | 1 cut(s) | 207 |
| SmlI | CTYRAG | 1 cut(s) | 207 |
| SmoI | CTYRAG | 1 cut(s) | 207 |
| Sse9I | AATT | 2 cut(s) | 15, 77 |
| StyI | CCWWGG | 1 cut(s) | 58 |
| TaqI | TCGA | 1 cut(s) | 208 |
| TasI | AATT | 2 cut(s) | 15, 77 |
| TfiI | GAWTC | 2 cut(s) | 84, 161 |
| TscAI | CASTG | 2 cut(s) | 51, 225 |
| TseI | GCWGC | 2 cut(s) | 212, 215 |
| TspDTI | ATGAA | 1 cut(s) | 65 |
| TspRI | CASTG | 2 cut(s) | 51, 225 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 65 |
| XhoI | CTCGAG | 1 cut(s) | 207 |