FvH4_5g19750

phospholipase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
11577663 .. 11579162
1500 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19750.t1

Sequence Viewer

Length: 1179 bp
ATGGGTAGCATAGCAACAAGGTGGAAGGCTCTGAGCGGCCAGGACGAGTGGGAGGGTCTATTAAACCCTCTCGACATCGATCTCCGCCGCTATATCATTCACTACGGGGAAAGGGCTGGAGCGATAGCCGTGGTGAACGAGCCAAAATCGAAGAACTACAGACTTCCACGATACGCGAAGGAAAATTTGTTCTCAAATATGGGATTGGAGAGTGGCAATCCATACAAGTACATGGTGAATAAATATTTGTATGCAGCCCATATGACATTTTCGTTACAGAAATCAAACTTTCTGGGTTATGTTGCGGTGACAACAGATGAAGGAGCCAAAGTGTTGGGGAGGAGGGATATTTTGATTTCTTGGAGAGGAACCCAATTGGTACATGAGTGGGATGTCGACAAGGAGACCGATTTAGTCTCAGCTTCTCACATTCTGGGAGAGGAGAATGATCCTCTGGTGCACCAGGGTTGGCTTTCCTATTACACTAATATTGACCTTCTGTCCCCGCACAATCAACTTTCTAGTTGCAGAGATCAGGCTGTAGCTGCACTTAAAGAAATACTAGATGAATACAAGGATGAAGAAATCAGCATTACCATCACTGGTCACAGCATGGGTGCTGCCATGGCAATTTTAAACGCAGCCGATATTGTTCATAACGGATACAATAAACTGGCATGTCAACCAAACAAGCTCATTCCTGTCACAGCCATTGTGTTTGCTTGCCCCCGTCTCGGAAACAAGGGTTTCGAAAATGTATTTTCCGGTCTCGAAAATCTTCACGTCTTGCGTATAACAAATGACCAAGATATAGTCCCTAACTTACCAGATCTGGAGGATTATGCTCATGTTGGAAAAGAGTTGAGAATCGACACTCTCAAGTCGCCGTTCTTGAAAGTAATTCCTGATACTCTTGTCACAGAAAGAATTGGTAATTTGCACAACCTGGAGGTTTACTTGCATGGAGTTGCAGGGACACAAGGAGTCAAAAGTTCTGGTTTCAAGATGGAAGTTGATCGTGATCTCGCGCTGGTAAACAAGCATATTGATGGGTTGAAGGATGAACATAATGTAGTTGCTCAGTGGTGGACGGAGAAGAATAAGTCTATGATCCAAAAGGATGATGGATCTTGGGTGTTGGATGATCACGAGGAAGATGCGACTATATGTTTAGTCTAG

Protein Analysis

393

Amino Acids

44.07

Weight (kDa)

5.38

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 119 - 277 2.9e-31 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 36
AccI GTMKAC 1 cut(s) 396
AccII CGCG 2 cut(s) 176, 1028
AciI CCGC 5 cut(s) 36, 85, 88, 305, 506
AclWI GGATC 3 cut(s) 443, 1105, 1135
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 1 cut(s) 184
AfaI GTAC 2 cut(s) 230, 381
AfiI CCNNNNNNNGG 1 cut(s) 734
AgsI TTSAA 3 cut(s) 895, 1003, 1057
AhdI GACNNNNNGTC 1 cut(s) 499
AjiI CACGTC 1 cut(s) 784
AjnI CCWGG 3 cut(s) 39, 462, 945
AloI GAACNNNNNNTCC 2 cut(s) 173, 205
AluBI AGCT 3 cut(s) 422, 545, 694
AluI AGCT 3 cut(s) 422, 545, 694
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 4 cut(s) 398, 421, 737, 773
Alw44I GTGCAC 1 cut(s) 458
AlwI GGATC 3 cut(s) 443, 1105, 1135
AoxI GGCC 1 cut(s) 37
ApaLI GTGCAC 1 cut(s) 458
ApeKI GCWGC 4 cut(s) 254, 545, 620, 641
ApoI RAATTY 1 cut(s) 184
Asp700I GAANNNNTTC 1 cut(s) 777
AspLEI GCGC 1 cut(s) 1030
AsuHPI GGTGA 3 cut(s) 145, 247, 319
AsuII TTCGAA 1 cut(s) 750
BaeGI GKGCMC 1 cut(s) 462
BaeI ACNNNNGTAYC 4 cut(s) 371, 404, 900, 933
BauI CACGAG 1 cut(s) 1148
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 4 cut(s) 266, 532, 607, 653
BccI CCATC 4 cut(s) 605, 1000, 1043, 1118
BceAI ACGGC 2 cut(s) 113, 871
BcgI CGANNNNNNTGC 2 cut(s) 1139, 1173
BciT130I CCWGG 3 cut(s) 41, 464, 947
BciVI GTATCC 1 cut(s) 656
BclI TGATCA 1 cut(s) 1144
BcoDI GTCTC 4 cut(s) 398, 421, 737, 773
BfaI CTAG 3 cut(s) 522, 563, 1177
BfmI CTRYAG 2 cut(s) 157, 540
BfuI GTATCC 1 cut(s) 656
BglII AGATCT 1 cut(s) 829
BisI GCNGC 6 cut(s) 37, 88, 255, 546, 621, 642
BlsI GCNGC 6 cut(s) 38, 89, 256, 547, 622, 643
Bme1390I CCNGG 3 cut(s) 41, 464, 947
BmeRI GACNNNNNGTC 1 cut(s) 499
BmgBI CACGTC 1 cut(s) 784
BmiI GGNNCC 2 cut(s) 325, 370
BmrFI CCNGG 3 cut(s) 41, 464, 947
BmsI GCATC 1 cut(s) 1147
BpmI CTGGAG 3 cut(s) 138, 854, 968
Bpu14I TTCGAA 1 cut(s) 750
BpuEI CTTGAG 1 cut(s) 863
Bsa29I ATCGAT 1 cut(s) 78
BsaBI GATNNNNATC 1 cut(s) 1020
BsaI GGTCTC 2 cut(s) 398, 773
BsaJI CCNNGG 3 cut(s) 129, 463, 624
BsaWI WCCGGW 1 cut(s) 764
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 734
Bse1I ACTGG 2 cut(s) 607, 678
Bse8I GATNNNNATC 1 cut(s) 1020
BseBI CCWGG 3 cut(s) 41, 464, 947
BseCI ATCGAT 1 cut(s) 78
BseDI CCNNGG 3 cut(s) 129, 463, 624
BseGI GGATG 5 cut(s) 397, 583, 1066, 1126, 1147
BseJI GATNNNNATC 1 cut(s) 1020
BseLI CCNNNNNNNGG 1 cut(s) 734
BseMII CTCAG 3 cut(s) 23, 432, 1094
BseNI ACTGG 2 cut(s) 607, 678
BseRI GAGGAG 2 cut(s) 355, 455
BseSI GKGCMC 1 cut(s) 462
BseXI GCAGC 4 cut(s) 266, 532, 607, 653
BsgI GTGCAG 1 cut(s) 531
Bsh1236I CGCG 2 cut(s) 176, 1028
BshFI GGCC 1 cut(s) 39
BshVI ATCGAT 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 462
BsiSI CCGG 1 cut(s) 765
BslFI GGGAC 3 cut(s) 487, 800, 988
BslI CCNNNNNNNGG 1 cut(s) 734
BsmAI GTCTC 4 cut(s) 398, 421, 737, 773
BsmBI CGTCTC 1 cut(s) 737
BsmFI GGGAC 3 cut(s) 487, 800, 988
BsnI GGCC 1 cut(s) 39
Bso31I GGTCTC 2 cut(s) 398, 773
Bsp119I TTCGAA 1 cut(s) 750
Bsp1286I GDGCHC 1 cut(s) 462
Bsp143I GATC 9 cut(s) 79, 448, 532, 829, 1015, 1021, 1110, 1127, 1144
Bsp19I CCATGG 1 cut(s) 624
BspACI CCGC 5 cut(s) 36, 85, 88, 305, 506
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 3 cut(s) 24, 431, 1093
BspDI ATCGAT 1 cut(s) 78
BspFNI CGCG 2 cut(s) 176, 1028
BspLI GGNNCC 2 cut(s) 325, 370
BspPI GGATC 3 cut(s) 443, 1105, 1135
BspT104I TTCGAA 1 cut(s) 750
BspTNI GGTCTC 2 cut(s) 398, 773
BsrBI CCGCTC 1 cut(s) 36
BsrI ACTGG 2 cut(s) 607, 678
BssECI CCNNGG 3 cut(s) 129, 463, 624
BssMI GATC 9 cut(s) 79, 448, 532, 829, 1015, 1021, 1110, 1127, 1144
BssSI CACGAG 1 cut(s) 1148
BssT1I CCWWGG 1 cut(s) 624
Bst2BI CACGAG 1 cut(s) 1148
Bst2UI CCWGG 3 cut(s) 41, 464, 947
BstBI TTCGAA 1 cut(s) 750
BstC8I GCNNGC 1 cut(s) 724
BstDEI CTNAG 3 cut(s) 32, 418, 1080
BstDSI CCRYGG 2 cut(s) 129, 624
BstF5I GGATG 5 cut(s) 397, 583, 1066, 1126, 1147
BstFNI CGCG 2 cut(s) 176, 1028
BstHHI GCGC 1 cut(s) 1030
BstKTI GATC 9 cut(s) 82, 451, 535, 832, 1018, 1024, 1113, 1130, 1147
BstMAI GTCTC 4 cut(s) 398, 421, 737, 773
BstMBI GATC 9 cut(s) 79, 448, 532, 829, 1015, 1021, 1110, 1127, 1144
BstMWI GCNNNNNNNGC 2 cut(s) 545, 626
BstNI CCWGG 3 cut(s) 41, 464, 947
BstNSI RCATGY 1 cut(s) 681
BstSCI CCNGG 3 cut(s) 39, 462, 945
BstSFI CTRYAG 2 cut(s) 157, 540
BstSLI GKGCMC 1 cut(s) 462
BstUI CGCG 2 cut(s) 176, 1028
BstV1I GCAGC 4 cut(s) 266, 532, 607, 653
BstX2I RGATCY 2 cut(s) 829, 1127
BstXI CCANNNNNNTGG 1 cut(s) 334
BstYI RGATCY 2 cut(s) 829, 1127
Bsu15I ATCGAT 1 cut(s) 78
BsuI GTATCC 1 cut(s) 656
BsuRI GGCC 1 cut(s) 39
BsuTUI ATCGAT 1 cut(s) 78
BtgI CCRYGG 2 cut(s) 129, 624
BtrI CACGTC 1 cut(s) 784
BtsCI GGATG 5 cut(s) 397, 583, 1066, 1126, 1147
BtsIMutI CAGTG 2 cut(s) 600, 1088
Cac8I GCNNGC 1 cut(s) 724
CfoI GCGC 1 cut(s) 1030
ClaI ATCGAT 1 cut(s) 78
Csp6I GTAC 2 cut(s) 229, 380
CviAII CATG 7 cut(s) 232, 383, 613, 625, 678, 848, 962
CviQI GTAC 2 cut(s) 229, 380
DdeI CTNAG 3 cut(s) 32, 418, 1080
DpnI GATC 9 cut(s) 81, 450, 534, 831, 1017, 1023, 1112, 1129, 1146
DpnII GATC 9 cut(s) 79, 448, 532, 829, 1015, 1021, 1110, 1127, 1144
DraI TTTAAA 1 cut(s) 636
DriI GACNNNNNGTC 1 cut(s) 499
EaeI YGGCCR 1 cut(s) 37
Eam1105I GACNNNNNGTC 1 cut(s) 499
EciI GGCGGA 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 624
Eco31I GGTCTC 2 cut(s) 398, 773
EcoRII CCWGG 3 cut(s) 39, 462, 945
EcoT14I CCWWGG 1 cut(s) 624
ErhI CCWWGG 1 cut(s) 624
Esp3I CGTCTC 1 cut(s) 737
FaeI CATG 7 cut(s) 235, 386, 616, 628, 681, 851, 965
FaqI GGGAC 3 cut(s) 487, 800, 988
FatI CATG 7 cut(s) 231, 382, 612, 624, 677, 847, 961
FauI CCCGC 1 cut(s) 513
FauNDI CATATG 1 cut(s) 261
FbaI TGATCA 1 cut(s) 1144
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 6 cut(s) 37, 88, 255, 546, 621, 642
FokI GGATG 5 cut(s) 404, 590, 1073, 1133, 1154
Fsp4HI GCNGC 6 cut(s) 37, 88, 255, 546, 621, 642
FspBI CTAG 3 cut(s) 522, 563, 1177
GlaI GCGC 1 cut(s) 1029
GluI GCNGC 6 cut(s) 37, 88, 255, 546, 621, 642
GsuI CTGGAG 3 cut(s) 138, 854, 968
HaeIII GGCC 1 cut(s) 39
HapII CCGG 1 cut(s) 765
HhaI GCGC 1 cut(s) 1030
Hin1II CATG 7 cut(s) 235, 386, 616, 628, 681, 851, 965
Hin6I GCGC 1 cut(s) 1028
HinP1I GCGC 1 cut(s) 1028
HincII GTYRAC 2 cut(s) 397, 683
HindII GTYRAC 2 cut(s) 397, 683
HinfI GANTC 2 cut(s) 867, 984
HpaII CCGG 1 cut(s) 765
HphI GGTGA 3 cut(s) 145, 247, 319
Hpy166II GTNNAC 7 cut(s) 136, 397, 460, 683, 955, 1036, 1089
Hpy188I TCNGA 2 cut(s) 33, 737
Hpy188III TCNNGA 8 cut(s) 71, 770, 833, 892, 905, 1003, 1019, 1148
Hpy8I GTNNAC 7 cut(s) 136, 397, 460, 683, 955, 1036, 1089
HpyAV CCTTC 5 cut(s) 19, 172, 314, 506, 1051
HpyCH4IV ACGT 1 cut(s) 783
HpyCH4V TGCA 7 cut(s) 254, 460, 528, 548, 940, 961, 971
HpyF10VI GCNNNNNNNGC 2 cut(s) 545, 626
HpyF3I CTNAG 3 cut(s) 32, 418, 1080
HpySE526I ACGT 1 cut(s) 783
Hsp92II CATG 7 cut(s) 235, 386, 616, 628, 681, 851, 965
HspAI GCGC 1 cut(s) 1028
Ksp22I TGATCA 1 cut(s) 1144
Kzo9I GATC 9 cut(s) 79, 448, 532, 829, 1015, 1021, 1110, 1127, 1144
LmnI GCTCC 2 cut(s) 119, 323
Lsp1109I GCAGC 4 cut(s) 266, 532, 607, 653
LweI GCATC 1 cut(s) 1147
MaeI CTAG 3 cut(s) 522, 563, 1177
MaeII ACGT 1 cut(s) 783
MaeIII GTNAC 5 cut(s) 273, 307, 605, 703, 916
MalI GATC 9 cut(s) 81, 450, 534, 831, 1017, 1023, 1112, 1129, 1146
MbiI CCGCTC 1 cut(s) 36
MboI GATC 9 cut(s) 79, 448, 532, 829, 1015, 1021, 1110, 1127, 1144
MboII GAAGA 5 cut(s) 163, 593, 770, 1108, 1166
MfeI CAATTG 1 cut(s) 374
MflI RGATCY 2 cut(s) 829, 1127
MhlI GDGCHC 1 cut(s) 462
MluCI AATT 6 cut(s) 184, 374, 630, 900, 927, 934
MlyI GAGTC 1 cut(s) 993
MmeI TCCRAC 2 cut(s) 832, 1119
MroXI GAANNNNTTC 1 cut(s) 777
MseI TTAA 3 cut(s) 62, 552, 635
MslI CAYNNNNRTG 1 cut(s) 1047
MspI CCGG 1 cut(s) 765
MspR9I CCNGG 3 cut(s) 41, 464, 947
MunI CAATTG 1 cut(s) 374
MvaI CCWGG 3 cut(s) 41, 464, 947
MvnI CGCG 2 cut(s) 176, 1028
MwoI GCNNNNNNNGC 2 cut(s) 545, 626
NcoI CCATGG 1 cut(s) 624
NdeI CATATG 1 cut(s) 261
NdeII GATC 9 cut(s) 79, 448, 532, 829, 1015, 1021, 1110, 1127, 1144
NlaIII CATG 7 cut(s) 235, 386, 616, 628, 681, 851, 965
NlaIV GGNNCC 2 cut(s) 325, 370
NmuCI GTSAC 4 cut(s) 307, 605, 703, 916
NspI RCATGY 1 cut(s) 681
NspV TTCGAA 1 cut(s) 750
PdmI GAANNNNTTC 1 cut(s) 777
PfeI GAWTC 1 cut(s) 867
PkrI GCNGC 6 cut(s) 38, 89, 256, 547, 622, 643
PleI GAGTC 1 cut(s) 992
PpsI GAGTC 1 cut(s) 992
Psp6I CCWGG 3 cut(s) 39, 462, 945
PspGI CCWGG 3 cut(s) 39, 462, 945
PspN4I GGNNCC 2 cut(s) 325, 370
PsuI RGATCY 2 cut(s) 829, 1127
RsaI GTAC 2 cut(s) 230, 381
RsaNI GTAC 2 cut(s) 229, 380
RseI CAYNNNNRTG 1 cut(s) 1047
SalI GTCGAC 1 cut(s) 395
SaqAI TTAA 3 cut(s) 62, 552, 635
SatI GCNGC 6 cut(s) 37, 88, 255, 546, 621, 642
Sau3AI GATC 9 cut(s) 79, 448, 532, 829, 1015, 1021, 1110, 1127, 1144
SchI GAGTC 1 cut(s) 993
ScrFI CCNGG 3 cut(s) 41, 464, 947
SduI GDGCHC 1 cut(s) 462
SetI ASST 8 cut(s) 23, 424, 498, 547, 696, 786, 948, 954
SfaNI GCATC 1 cut(s) 1147
SfcI CTRYAG 2 cut(s) 157, 540
SfuI TTCGAA 1 cut(s) 750
SmiMI CAYNNNNRTG 1 cut(s) 1047
SmlI CTYRAG 1 cut(s) 878
SmoI CTYRAG 1 cut(s) 878
Sse9I AATT 6 cut(s) 184, 374, 630, 900, 927, 934
SsiI CCGC 5 cut(s) 36, 85, 88, 305, 506
SspI AATATT 2 cut(s) 245, 490
SspMI CTAG 3 cut(s) 522, 563, 1177
StyD4I CCNGG 3 cut(s) 39, 462, 945
StyI CCWWGG 1 cut(s) 624
TaiI ACGT 1 cut(s) 786
TaqI TCGA 7 cut(s) 72, 78, 149, 396, 750, 771, 870
TaqII GACCGA 1 cut(s) 422
TasI AATT 6 cut(s) 184, 374, 630, 900, 927, 934
TatI WGTACW 1 cut(s) 228
TauI GCSGC 2 cut(s) 39, 90
TfiI GAWTC 1 cut(s) 867
Tru1I TTAA 3 cut(s) 62, 552, 635
Tru9I TTAA 3 cut(s) 62, 552, 635
TscAI CASTG 2 cut(s) 607, 1088
TseFI GTSAC 4 cut(s) 307, 605, 703, 916
TseI GCWGC 4 cut(s) 254, 545, 620, 641
Tsp45I GTSAC 4 cut(s) 307, 605, 703, 916
TspDTI ATGAA 5 cut(s) 333, 582, 594, 644, 1077
TspGWI ACGGA 2 cut(s) 675, 1106
TspRI CASTG 2 cut(s) 607, 1088
VneI GTGCAC 1 cut(s) 458
XapI RAATTY 1 cut(s) 184
XceI RCATGY 1 cut(s) 681
XcmI CCANNNNNNNNNTGG 1 cut(s) 1121
XmiI GTMKAC 1 cut(s) 396
XmnI GAANNNNTTC 1 cut(s) 777
XspI CTAG 3 cut(s) 522, 563, 1177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.