Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002154

Physical Location & Seq

Genomic Coordinates Forward (+)

6005749 .. 6006404

Gene Structure 656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0078000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGAGCTGGACAATATGGCTATGTTGTCAAACAAATGCAATTTCCAGGTTCCTATGGAGGTTATTAAGTTGATCGACGATGGAAATAATCCTGATTTACTTACAAGGGATCTCATAAACAGCTGCATTGCCAAAAATCAGATCACTAAAGGCAAAACTGATACCTTCAAGATTTTACGAGAGCATCAACTGGAAGAACTTGAACAGGCATTTCCTGATGAAGTTGAATCATATAGAGAAATACGTGTTGCTGCTTCTGCTGTTACGAAGCTTGCAAAAGGACAAAGCACATTGCCAAATGGAGATGTGAAGCACGAAGTCAAAGCTGAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

111

Amino Acids

12.48

Weight (kDa)

5.01

Isoelectric Point (pI)

21.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med10	PF09748	2 - 79	3.9e-23	Transcription factor subunit Med10 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19750 FvH4_5g19760
malus_domestica	MD04G1058700.v1.1
prunus_persica	Prupe.5G062500_v2.0.a1 Prupe.5G062600_v2.0.a1 Prupe.5G062700_v2.0.a1
pyrus_communis	pycom04g05260
rosa_chinensis	RchiOBHm_Chr7g0203651 RchiOBHm_Chr7g0203681 RchiOBHm_Chr7g0204521 RchiOBHm_Chr7g0204541
rosa_laevigata	RLG00000003452 RLG00000003453 RLG00000003512
rosa_multiflora	Rmu_co8274427.1_g000001 Rmu_co8340383.1_g000001 Rmu_sc0005354.1_g000007 Rmu_ssc0000443.1_g000023 Rmu_ssc0000443.1_g000033
rosa_roxburghii	Rroxscaffold_3G00253010 Rroxscaffold_3G00253020 Rroxscaffold_3G00253540 Rroxscaffold_3G00253610 Rroxscaffold_6G00397050 Rroxscaffold_6G00397100
rosa_rugosa	Rorug07G0078000 Rorug07G0084900 Rorug07G0085000
rosa_samantha	Rh7AG207600 Rh7AG214200 Rh7AG214300 Rh7BG206900 Rh7BG211700 Rh7BG211800 Rh7CG219900 Rh7CG227300 Rh7DG214500 Rh7DG214700 Rh7DG221800 Rh7DG222000
rosa_wichuraiana	Rw7G018100 Rw7G018570 Rw7G018580 Rw7G018590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	117
AflIII	ACRYGT	1 cut(s)	244
AgsI	TTSAA	3 cut(s)	169, 203, 227
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	4 cut(s)	7, 123, 271, 326
AluI	AGCT	4 cut(s)	7, 123, 271, 326
AlwI	GGATC	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	123, 251
BbvI	GCAGC	2 cut(s)	110, 238
BccI	CCATC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	47
BisI	GCNGC	2 cut(s)	124, 252
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	2 cut(s)	125, 253
Bme1390I	CCNGG	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	193
Bpu1102I	GCTNAGC	1 cut(s)	327
BsaAI	YACGTR	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	195
Bse3DI	GCAATG	2 cut(s)	126, 290
BseBI	CCWGG	1 cut(s)	47
BseMI	GCAATG	2 cut(s)	126, 290
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	110, 238
Bsp143I	GATC	3 cut(s)	72, 109, 141
Bsp1720I	GCTNAGC	1 cut(s)	327
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	51
BspPI	GGATC	1 cut(s)	117
BsrDI	GCAATG	2 cut(s)	126, 290
BsrI	ACTGG	1 cut(s)	195
BssMI	GATC	3 cut(s)	72, 109, 141
Bst2UI	CCWGG	1 cut(s)	47
BstBAI	YACGTR	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	327
BstKTI	GATC	3 cut(s)	75, 112, 144
BstMBI	GATC	3 cut(s)	72, 109, 141
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	110, 238
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	273
CviJI	RGCY	6 cut(s)	7, 20, 123, 271, 326, 331
CviKI_1	RGCY	6 cut(s)	7, 20, 123, 271, 326, 331
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	3 cut(s)	74, 111, 143
DpnII	GATC	3 cut(s)	72, 109, 141
EcoRII	CCWGG	1 cut(s)	45
FaiI	YATR	6 cut(s)	17, 23, 56, 116, 232, 234
Fnu4HI	GCNGC	2 cut(s)	124, 252
Fsp4HI	GCNGC	2 cut(s)	124, 252
GluI	GCNGC	2 cut(s)	124, 252
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	1 cut(s)	227
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	3 cut(s)	92, 169, 215
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	3 cut(s)	39, 126, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	1 cut(s)	244
Kzo9I	GATC	3 cut(s)	72, 109, 141
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	6 cut(s)	32, 59, 105, 176, 191, 228
Lsp1109I	GCAGC	2 cut(s)	110, 238
LweI	GCATC	1 cut(s)	193
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	3 cut(s)	74, 111, 143
MboI	GATC	3 cut(s)	72, 109, 141
MboII	GAAGA	1 cut(s)	206
MflI	RGATCY	1 cut(s)	109
MluCI	AATT	1 cut(s)	40
MnlI	CCTC	1 cut(s)	52
MseI	TTAA	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	3 cut(s)	72, 109, 141
NlaIV	GGNNCC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	2 cut(s)	125, 253
Ppu21I	YACGTR	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	2 cut(s)	124, 252
Sau3AI	GATC	3 cut(s)	72, 109, 141
ScrFI	CCNGG	1 cut(s)	47
SetI	ASST	8 cut(s)	9, 51, 63, 125, 167, 247, 273, 328
SfaNI	GCATC	1 cut(s)	193
Sse9I	AATT	1 cut(s)	40
StyD4I	CCNGG	1 cut(s)	45
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	40
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TseI	GCWGC	2 cut(s)	123, 251
TspDTI	ATGAA	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.