Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002154

Physical Location & Seq

Genomic Coordinates Forward (+)

48647896 .. 48649806

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003453

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGACCATCACTGGGGTGGTGGCGCAGTTGGCTACCGCGATTATAGTTAACTTTTGGACTTGCAACTCCAATTTGAGACGATTGATACTCTTGATTTTTAAAGGTGCATGGAGTCATGACAGAAGCATGTACCAACTGTTTAACAATTTCAATCCTCTCAAATTTCAACAAGGTGGAGGCTTCTGGGCGGCGAGAACGAGTGGACGGGGTTTATTGGATCCTCTCGATATTGATCTCCGCCGCTACATCATTCACTATGGTGAAAGGGCCGGAGCCATAGGCGACGGCTTCATCAAGGAAACAAAATCAAGCAAGTGTGGACTTCCGCGATATGCAAAGAGCCAATTCTTCACCAAGGTGGGTTCGGAGAACTGCAACCCTTATAAGTACGGGGTGAAGAAGTATTTGTATGCAGCAACAATGTTATCTCCCGGCAGATCGAACTGGTTGGCTTATGTTGCGGTGGCAGCAGACGAGGGAAAGGAAGTGTTGGGAAGGAGGGACATTTTGATTTCATGGAGAGGAACTGTGCTGGACGAAGAGGCCGGAATTGATTTGTTGTTCGATTTAGTCTCGGCTTCTGATATTCTGGGAAGTGAGAGTGGAGCTAAGGTGCACCATGGTTGGCATTCCTATTACACTAATGTTGACCCTGTTTCTCCATACACTAAAACTAGTTGTAGAGACCAGGTTTTAGCTACAATTAGAGAAGTAGTGGACCAATACAAGGATGAGGAAATAAGCGTAACTGTCACTGGCATGGCTACAGCATGGCCCTCGTCTCGGACTCTCGGAGACGAAGGATTCAGAAAAGTATTCAGTAGTCTCGAAAACCTTCATGTCTTACGCATCACAAATCACCACGATATTATAACTATTCTACCGCCATCAAACAGTTATGTTCACGTTGGAAAAGAGTTGGAAATCGACACTCTTAAATCTCCCTACTTGAAGGATGCAGCGCAGTCCCTACACAATTTGGAAGTTTACCTTCATGGAGTTGCAGGAACACAAGGGATAAATGGTTTCAAATTGGAGGTTTATCGTGATCTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

353

Amino Acids

39.32

Weight (kDa)

7.71

Isoelectric Point (pI)

28.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	171 - 253	1.9e-06	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19750 FvH4_5g19760
malus_domestica	MD04G1058700.v1.1
prunus_persica	Prupe.5G062500_v2.0.a1 Prupe.5G062600_v2.0.a1 Prupe.5G062700_v2.0.a1
pyrus_communis	pycom04g05260
rosa_chinensis	RchiOBHm_Chr7g0203651 RchiOBHm_Chr7g0203681 RchiOBHm_Chr7g0204521 RchiOBHm_Chr7g0204541
rosa_laevigata	RLG00000003452 RLG00000003453 RLG00000003512
rosa_multiflora	Rmu_co8274427.1_g000001 Rmu_co8340383.1_g000001 Rmu_sc0005354.1_g000007 Rmu_ssc0000443.1_g000023 Rmu_ssc0000443.1_g000033
rosa_roxburghii	Rroxscaffold_3G00253010 Rroxscaffold_3G00253020 Rroxscaffold_3G00253540 Rroxscaffold_3G00253610 Rroxscaffold_6G00397050 Rroxscaffold_6G00397100
rosa_rugosa	Rorug07G0078000 Rorug07G0084900 Rorug07G0085000
rosa_samantha	Rh7AG207600 Rh7AG214200 Rh7AG214300 Rh7BG206900 Rh7BG211700 Rh7BG211800 Rh7CG219900 Rh7CG227300 Rh7DG214500 Rh7DG214700 Rh7DG221800 Rh7DG222000
rosa_wichuraiana	Rw7G018100 Rw7G018570 Rw7G018580 Rw7G018590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	384, 872
AccII	CGCG	2 cut(s)	38, 328
AciI	CCGC	7 cut(s)	36, 188, 238, 241, 326, 461, 884
AclWI	GGATC	2 cut(s)	212, 225
AcsI	RAATTY	1 cut(s)	161
AfaI	GTAC	2 cut(s)	131, 389
AfiI	CCNNNNNNNGG	3 cut(s)	12, 727, 783
AgsI	TTSAA	4 cut(s)	151, 167, 952, 1030
AhlI	ACTAGT	1 cut(s)	674
AjnI	CCWGG	1 cut(s)	687
AleI	CACNNNNGTG	3 cut(s)	14, 258, 356
AluBI	AGCT	2 cut(s)	608, 698
AluI	AGCT	2 cut(s)	608, 698
Alw21I	GWGCWC	1 cut(s)	618
Alw26I	GTCTC	6 cut(s)	70, 577, 678, 786, 789, 830
Alw44I	GTGCAC	1 cut(s)	614
AlwI	GGATC	2 cut(s)	212, 225
AoxI	GGCC	3 cut(s)	267, 543, 773
ApaLI	GTGCAC	1 cut(s)	614
ApeKI	GCWGC	3 cut(s)	413, 467, 959
ApoI	RAATTY	1 cut(s)	161
Asp700I	GAANNNNTTC	1 cut(s)	834
AspLEI	GCGC	2 cut(s)	25, 964
AspS9I	GGNCC	3 cut(s)	267, 718, 774
AsuC2I	CCSGG	1 cut(s)	432
AsuHPI	GGTGA	4 cut(s)	272, 343, 406, 851
AvaII	GGWCC	1 cut(s)	718
BaeGI	GKGCMC	1 cut(s)	618
BamHI	GGATCC	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	618
BbvI	GCAGC	3 cut(s)	425, 479, 971
BccI	CCATC	2 cut(s)	14, 895
BceAI	ACGGC	1 cut(s)	301
BcgI	CGANNNNNNTGC	2 cut(s)	759, 793
BciT130I	CCWGG	1 cut(s)	689
BcnI	CCSGG	1 cut(s)	432
BcoDI	GTCTC	6 cut(s)	70, 577, 678, 786, 789, 830
BcuI	ACTAGT	1 cut(s)	674
BfaI	CTAG	1 cut(s)	675
BfmI	CTRYAG	1 cut(s)	765
BisI	GCNGC	5 cut(s)	189, 241, 414, 468, 960
BlsI	GCNGC	5 cut(s)	190, 242, 415, 469, 961
Bme1390I	CCNGG	2 cut(s)	432, 689
Bme18I	GGWCC	1 cut(s)	718
BmgT120I	GGNCC	3 cut(s)	267, 718, 774
BmiI	GGNNCC	2 cut(s)	219, 274
BmrFI	CCNGG	2 cut(s)	432, 689
BmrI	ACTGGG	1 cut(s)	21
BmsI	GCATC	2 cut(s)	858, 946
BmuI	ACTGGG	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	609
BpuMI	CCSGG	1 cut(s)	432
BsaBI	GATNNNNATC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	678
BsaJI	CCNNGG	2 cut(s)	354, 619
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 727, 783
Bse1I	ACTGG	3 cut(s)	16, 449, 760
Bse8I	GATNNNNATC	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	689
BseDI	CCNNGG	2 cut(s)	354, 619
BseGI	GGATG	2 cut(s)	736, 961
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	3 cut(s)	12, 727, 783
BseNI	ACTGG	3 cut(s)	16, 449, 760
BseSI	GKGCMC	1 cut(s)	618
BseXI	GCAGC	3 cut(s)	425, 479, 971
Bsh1236I	CGCG	2 cut(s)	38, 328
BshFI	GGCC	3 cut(s)	269, 545, 775
BsiHKAI	GWGCWC	1 cut(s)	618
BsiSI	CCGG	3 cut(s)	270, 432, 546
BslFI	GGGAC	2 cut(s)	515, 952
BslI	CCNNNNNNNGG	3 cut(s)	12, 727, 783
BsmAI	GTCTC	6 cut(s)	70, 577, 678, 786, 789, 830
BsmBI	CGTCTC	3 cut(s)	70, 786, 789
BsmFI	GGGAC	2 cut(s)	515, 952
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	3 cut(s)	269, 545, 775
Bso31I	GGTCTC	1 cut(s)	678
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp143I	GATC	4 cut(s)	217, 232, 437, 1048
Bsp19I	CCATGG	1 cut(s)	619
BspACI	CCGC	7 cut(s)	36, 188, 238, 241, 326, 461, 884
BspANI	GGCC	3 cut(s)	269, 545, 775
BspFNI	CGCG	2 cut(s)	38, 328
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	219, 274
BspPI	GGATC	2 cut(s)	212, 225
BspTNI	GGTCTC	1 cut(s)	678
BsrI	ACTGG	3 cut(s)	16, 449, 760
BssECI	CCNNGG	2 cut(s)	354, 619
BssMI	GATC	4 cut(s)	217, 232, 437, 1048
BssT1I	CCWWGG	2 cut(s)	354, 619
Bst2UI	CCWGG	1 cut(s)	689
Bst4CI	ACNGT	4 cut(s)	138, 529, 751, 896
Bst6I	CTCTTC	1 cut(s)	534
BstDEI	CTNAG	1 cut(s)	609
BstDSI	CCRYGG	1 cut(s)	619
BstF5I	GGATG	2 cut(s)	736, 961
BstFNI	CGCG	2 cut(s)	38, 328
BstHHI	GCGC	2 cut(s)	25, 964
BstKTI	GATC	4 cut(s)	220, 235, 440, 1051
BstMAI	GTCTC	6 cut(s)	70, 577, 678, 786, 789, 830
BstMBI	GATC	4 cut(s)	217, 232, 437, 1048
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 458, 467
BstNI	CCWGG	1 cut(s)	689
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	2 cut(s)	430, 687
BstSFI	CTRYAG	1 cut(s)	765
BstSLI	GKGCMC	1 cut(s)	618
BstUI	CGCG	2 cut(s)	38, 328
BstV1I	GCAGC	3 cut(s)	425, 479, 971
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	3 cut(s)	269, 545, 775
BtgI	CCRYGG	1 cut(s)	619
BtsCI	GGATG	2 cut(s)	736, 961
BtsIMutI	CAGTG	2 cut(s)	9, 753
CciI	TCATGA	1 cut(s)	115
CfoI	GCGC	2 cut(s)	25, 964
Cfr13I	GGNCC	3 cut(s)	267, 718, 774
CsiI	ACCWGGT	1 cut(s)	687
Csp6I	GTAC	2 cut(s)	130, 388
CviAII	CATG	9 cut(s)	108, 116, 127, 516, 620, 760, 771, 839, 995
CviQI	GTAC	2 cut(s)	130, 388
DdeI	CTNAG	1 cut(s)	609
DpnI	GATC	4 cut(s)	219, 234, 439, 1050
DpnII	GATC	4 cut(s)	217, 232, 437, 1048
DraI	TTTAAA	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
EciI	GGCGGA	1 cut(s)	227
Eco130I	CCWWGG	2 cut(s)	354, 619
Eco31I	GGTCTC	1 cut(s)	678
Eco47I	GGWCC	1 cut(s)	718
EcoRII	CCWGG	1 cut(s)	687
EcoT14I	CCWWGG	2 cut(s)	354, 619
ErhI	CCWWGG	2 cut(s)	354, 619
Esp3I	CGTCTC	3 cut(s)	70, 786, 789
FaeI	CATG	9 cut(s)	111, 119, 130, 519, 623, 763, 774, 842, 998
FalI	AAGNNNNNCTT	2 cut(s)	975, 1007
FaqI	GGGAC	2 cut(s)	515, 952
FatI	CATG	9 cut(s)	107, 115, 126, 515, 619, 759, 770, 838, 994
Fnu4HI	GCNGC	5 cut(s)	189, 241, 414, 468, 960
FokI	GGATG	2 cut(s)	743, 968
Fsp4HI	GCNGC	5 cut(s)	189, 241, 414, 468, 960
FspBI	CTAG	1 cut(s)	675
GlaI	GCGC	2 cut(s)	24, 963
GluI	GCNGC	5 cut(s)	189, 241, 414, 468, 960
HaeIII	GGCC	3 cut(s)	269, 545, 775
HapII	CCGG	3 cut(s)	270, 432, 546
HhaI	GCGC	2 cut(s)	25, 964
Hin1II	CATG	9 cut(s)	111, 119, 130, 519, 623, 763, 774, 842, 998
Hin6I	GCGC	2 cut(s)	23, 962
HinP1I	GCGC	2 cut(s)	23, 962
HincII	GTYRAC	2 cut(s)	49, 649
HindII	GTYRAC	2 cut(s)	49, 649
HinfI	GANTC	3 cut(s)	112, 787, 804
HpaI	GTTAAC	1 cut(s)	49
HpaII	CCGG	3 cut(s)	270, 432, 546
HphI	GGTGA	4 cut(s)	272, 343, 406, 851
Hpy166II	GTNNAC	8 cut(s)	49, 203, 320, 616, 649, 718, 904, 988
Hpy188I	TCNGA	5 cut(s)	367, 583, 786, 794, 809
Hpy188III	TCNNGA	5 cut(s)	91, 116, 224, 827, 1046
Hpy8I	GTNNAC	8 cut(s)	49, 203, 320, 616, 649, 718, 904, 988
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	5 cut(s)	489, 794, 845, 946, 1001
HpyCH4III	ACNGT	4 cut(s)	138, 529, 751, 896
HpyCH4IV	ACGT	1 cut(s)	906
HpyCH4V	TGCA	8 cut(s)	63, 107, 335, 375, 413, 616, 959, 1004
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 458, 467
HpyF3I	CTNAG	1 cut(s)	609
HpySE526I	ACGT	1 cut(s)	906
Hsp92II	CATG	9 cut(s)	111, 119, 130, 519, 623, 763, 774, 842, 998
HspAI	GCGC	2 cut(s)	23, 962
KspAI	GTTAAC	1 cut(s)	49
Kzo9I	GATC	4 cut(s)	217, 232, 437, 1048
LmnI	GCTCC	2 cut(s)	272, 605
Lsp1109I	GCAGC	3 cut(s)	425, 479, 971
LweI	GCATC	2 cut(s)	858, 946
MabI	ACCWGGT	1 cut(s)	687
MaeI	CTAG	1 cut(s)	675
MaeII	ACGT	1 cut(s)	906
MaeIII	GTNAC	2 cut(s)	745, 751
MalI	GATC	4 cut(s)	219, 234, 439, 1050
MboI	GATC	4 cut(s)	217, 232, 437, 1048
MboII	GAAGA	3 cut(s)	340, 409, 551
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	618
MluCI	AATT	8 cut(s)	70, 145, 161, 344, 549, 702, 976, 1031
MlyI	GAGTC	2 cut(s)	121, 781
MmeI	TCCRAC	2 cut(s)	889, 900
MroXI	GAANNNNTTC	1 cut(s)	834
MseI	TTAA	4 cut(s)	48, 99, 141, 936
MslI	CAYNNNNRTG	4 cut(s)	14, 258, 356, 758
MspI	CCGG	3 cut(s)	270, 432, 546
MspR9I	CCNGG	2 cut(s)	432, 689
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	1 cut(s)	689
MvnI	CGCG	2 cut(s)	38, 328
MwoI	GCNNNNNNNGC	3 cut(s)	29, 458, 467
NciI	CCSGG	1 cut(s)	432
NcoI	CCATGG	1 cut(s)	619
NdeII	GATC	4 cut(s)	217, 232, 437, 1048
NlaIII	CATG	9 cut(s)	111, 119, 130, 519, 623, 763, 774, 842, 998
NlaIV	GGNNCC	2 cut(s)	219, 274
NmeAIII	GCCGAG	1 cut(s)	554
NmuCI	GTSAC	1 cut(s)	751
NspI	RCATGY	1 cut(s)	130
OliI	CACNNNNGTG	3 cut(s)	14, 258, 356
PagI	TCATGA	1 cut(s)	115
PctI	GAATGC	1 cut(s)	628
PdmI	GAANNNNTTC	1 cut(s)	834
PfeI	GAWTC	1 cut(s)	804
PkrI	GCNGC	5 cut(s)	190, 242, 415, 469, 961
PleI	GAGTC	2 cut(s)	120, 781
PpsI	GAGTC	2 cut(s)	120, 781
PsiI	TTATAA	2 cut(s)	384, 872
Psp6I	CCWGG	1 cut(s)	687
PspGI	CCWGG	1 cut(s)	687
PspN4I	GGNNCC	2 cut(s)	219, 274
PspPI	GGNCC	3 cut(s)	267, 718, 774
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	2 cut(s)	131, 389
RsaNI	GTAC	2 cut(s)	130, 388
RseI	CAYNNNNRTG	4 cut(s)	14, 258, 356, 758
SaqAI	TTAA	4 cut(s)	48, 99, 141, 936
SatI	GCNGC	5 cut(s)	189, 241, 414, 468, 960
Sau3AI	GATC	4 cut(s)	217, 232, 437, 1048
Sau96I	GGNCC	3 cut(s)	267, 718, 774
SchI	GAGTC	2 cut(s)	121, 781
ScrFI	CCNGG	2 cut(s)	432, 689
SduI	GDGCHC	1 cut(s)	618
SexAI	ACCWGGT	1 cut(s)	687
SfaNI	GCATC	2 cut(s)	858, 946
SfcI	CTRYAG	1 cut(s)	765
SinI	GGWCC	1 cut(s)	718
SmiMI	CAYNNNNRTG	4 cut(s)	14, 258, 356, 758
SpeI	ACTAGT	1 cut(s)	674
Sse9I	AATT	8 cut(s)	70, 145, 161, 344, 549, 702, 976, 1031
SsiI	CCGC	7 cut(s)	36, 188, 238, 241, 326, 461, 884
SspMI	CTAG	1 cut(s)	675
StyD4I	CCNGG	2 cut(s)	430, 687
StyI	CCWWGG	2 cut(s)	354, 619
TaaI	ACNGT	4 cut(s)	138, 529, 751, 896
TaiI	ACGT	1 cut(s)	909
TaqI	TCGA	5 cut(s)	225, 440, 564, 828, 927
TasI	AATT	8 cut(s)	70, 145, 161, 344, 549, 702, 976, 1031
TauI	GCSGC	2 cut(s)	191, 243
TfiI	GAWTC	1 cut(s)	804
Tru1I	TTAA	4 cut(s)	48, 99, 141, 936
Tru9I	TTAA	4 cut(s)	48, 99, 141, 936
TscAI	CASTG	2 cut(s)	16, 760
TseFI	GTSAC	1 cut(s)	751
TseI	GCWGC	3 cut(s)	413, 467, 959
Tsp45I	GTSAC	1 cut(s)	751
TspDTI	ATGAA	4 cut(s)	280, 504, 827, 983
TspRI	CASTG	2 cut(s)	16, 760
VneI	GTGCAC	1 cut(s)	614
VpaK11BI	GGWCC	1 cut(s)	718
XapI	RAATTY	1 cut(s)	161
XceI	RCATGY	1 cut(s)	130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XmnI	GAANNNNTTC	1 cut(s)	834
XspI	CTAG	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.