Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002154

Physical Location & Seq

Genomic Coordinates Reverse (-)

11602277 .. 11603823

Gene Structure 1547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCTAGCTTTGCAACAAACTGGAAGGATCTCAGCGGCGAGAACGAGTGGGAGGGTCTTCTCGACCCTCTTGACATCAATCTCCGCCGCTATATCATTCACTACGGTGAAAGGTCTGGATCGATAGCTACCGTGGTGACCGAGCAGAAGTCGAAAAACTACGGACTTCCTCGATACGCAAAGGGACATTTGTTCCAAAAGGTGGGTTTGGAGAATGGTAATCCATACAAGTACGTGGTGAAAAATTATTTTTATGCAGCTCATGTGGAACTTTCCCCCAAGAAATCAAACTTTGTTGGTTTTGTTGCGGTGACAACTGATGAAGGAACAAAGCTGCTAGGCAGGAGGGATGTCTTGATTTCTTGGAGAGGAACCCAGTTGAAACATGAATGGCTTGTTGGCATCAAGATCAATTTAGTCCCAGCTGCTCACATTCTGGGAGAGCAGAATGATCCTAAGGTGCACCATGGTTGGCTTTCGTATTACACTGATATCGACCCTGCGTCCTCACACAATCGACTTACTAATTCCAGAGATCAGGCTCTGGCTGCTCTTAAAGAAGTACTCAATGAATACAAGGGTGAAGAAATCAGCATTACAGTCACTGGTCACAGCATGGGTGCTGCTATGGCAACTTTAAAGGCAACTGATATTGTTCGCAACGGATACAACATACTGCTGGAAGATCAACCAAATAAGGTCATTCCTGTCACAGCCTTTGTGTTTGCTTGCCCTCGTGTTGGAAACGAGGGTTTTGGAAATGTATTTTCCGGTCTTGAAAATCTTCACGTCTTGCGTGTAACAAATGACCAAGATATAGTCCCTAAACAACCAGAAACGGCCGACTATGTTCATGTTGGAAAAGAGCTGAGATTCGACTCTGTCAAGTCGCCGTTCATGAAAGTTATTCCTGATGTTGTGATCAAAGAAAAAGTAGGCATTTTGCACGATCTGGAGGTTTACTTGCATGGAGTTGCAGGAACTCACGGGATTAATAGTTCTGATTTCAAACTGGAAGTTGATCGTGATCTCTCACTGGTAAACAAGTATATTGATGGCGTGAAGGATGAATATAATATAGTTGCAGAGTGGTGGACCGAGAAGAACAAGTCTATGATCCAAACGAGTGATGGCTTTTGGGTGTTGGATGATCACGAGAAAGATGAGAGCGAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

393

Amino Acids

44.11

Weight (kDa)

5.77

Isoelectric Point (pI)

26.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	120 - 279	2.1e-31	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19750 FvH4_5g19760
malus_domestica	MD04G1058700.v1.1
prunus_persica	Prupe.5G062500_v2.0.a1 Prupe.5G062600_v2.0.a1 Prupe.5G062700_v2.0.a1
pyrus_communis	pycom04g05260
rosa_chinensis	RchiOBHm_Chr7g0203651 RchiOBHm_Chr7g0203681 RchiOBHm_Chr7g0204521 RchiOBHm_Chr7g0204541
rosa_laevigata	RLG00000003452 RLG00000003453 RLG00000003512
rosa_multiflora	Rmu_co8274427.1_g000001 Rmu_co8340383.1_g000001 Rmu_sc0005354.1_g000007 Rmu_ssc0000443.1_g000023 Rmu_ssc0000443.1_g000033
rosa_roxburghii	Rroxscaffold_3G00253010 Rroxscaffold_3G00253020 Rroxscaffold_3G00253540 Rroxscaffold_3G00253610 Rroxscaffold_6G00397050 Rroxscaffold_6G00397100
rosa_rugosa	Rorug07G0078000 Rorug07G0084900 Rorug07G0085000
rosa_samantha	Rh7AG207600 Rh7AG214200 Rh7AG214300 Rh7BG206900 Rh7BG211700 Rh7BG211800 Rh7CG219900 Rh7CG227300 Rh7DG214500 Rh7DG214700 Rh7DG221800 Rh7DG222000
rosa_wichuraiana	Rw7G018100 Rw7G018570 Rw7G018580 Rw7G018590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	202
AciI	CCGC	4 cut(s)	36, 85, 88, 308
AclWI	GGATC	4 cut(s)	36, 127, 446, 1111
AcoI	YGGCCR	1 cut(s)	840
AfaI	GTAC	2 cut(s)	233, 564
AfiI	CCNNNNNNNGG	2 cut(s)	202, 740
AgsI	TTSAA	3 cut(s)	382, 779, 1009
AhdI	GACNNNNNGTC	1 cut(s)	502
AjiI	CACGTC	1 cut(s)	790
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
AleI	CACNNNNGTG	1 cut(s)	105
AloI	GAACNNNNNNTCC	2 cut(s)	982, 1014
AluBI	AGCT	6 cut(s)	9, 128, 260, 334, 425, 868
AluI	AGCT	6 cut(s)	9, 128, 260, 334, 425, 868
Alw21I	GWGCWC	1 cut(s)	465
Alw44I	GTGCAC	1 cut(s)	461
AlwI	GGATC	4 cut(s)	36, 127, 446, 1111
AlwNI	CAGNNNCTG	2 cut(s)	544, 605
AoxI	GGCC	1 cut(s)	840
ApaLI	GTGCAC	1 cut(s)	461
ApeKI	GCWGC	5 cut(s)	257, 334, 425, 548, 623
AseI	ATTAAT	1 cut(s)	993
Asp700I	GAANNNNTTC	1 cut(s)	783
AspS9I	GGNCC	1 cut(s)	1095
AsuHPI	GGTGA	5 cut(s)	119, 148, 250, 322, 593
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	1095
AxyI	CCTNAGG	1 cut(s)	456
BaeGI	GKGCMC	1 cut(s)	465
BauI	CACGAG	2 cut(s)	735, 1154
BbsI	GAAGAC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	5 cut(s)	269, 321, 412, 535, 610
BccI	CCATC	2 cut(s)	1049, 1124
BceAI	ACGGC	2 cut(s)	855, 877
BciVI	GTATCC	1 cut(s)	659
BclI	TGATCA	2 cut(s)	921, 1150
BfaI	CTAG	2 cut(s)	6, 338
BfuI	GTATCC	1 cut(s)	659
BisI	GCNGC	7 cut(s)	37, 88, 258, 335, 426, 549, 624
BlsI	GCNGC	7 cut(s)	38, 89, 259, 336, 427, 550, 625
BmcAI	AGTACT	1 cut(s)	564
Bme18I	GGWCC	1 cut(s)	1095
BmeRI	GACNNNNNGTC	1 cut(s)	502
BmgBI	CACGTC	1 cut(s)	790
BmgT120I	GGNCC	1 cut(s)	1095
BmiI	GGNNCC	1 cut(s)	373
BmrI	ACTGGG	1 cut(s)	370
BmsI	GCATC	1 cut(s)	411
BmtI	GCTAGC	1 cut(s)	9
BmuI	ACTGGG	1 cut(s)	370
BpiI	GAAGAC	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	974
Bsa29I	ATCGAT	1 cut(s)	122
BsaAI	YACGTR	1 cut(s)	235
BsaBI	GATNNNNATC	1 cut(s)	1026
BsaJI	CCNNGG	2 cut(s)	132, 466
BsaWI	WCCGGW	1 cut(s)	770
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 740
Bse1I	ACTGG	5 cut(s)	26, 376, 610, 1017, 1041
Bse21I	CCTNAGG	1 cut(s)	456
Bse8I	GATNNNNATC	1 cut(s)	1026
BseCI	ATCGAT	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	132, 466
BseGI	GGATG	3 cut(s)	355, 1072, 1153
BseJI	GATNNNNATC	1 cut(s)	1026
BseLI	CCNNNNNNNGG	2 cut(s)	202, 740
BseMII	CTCAG	2 cut(s)	46, 860
BseNI	ACTGG	5 cut(s)	26, 376, 610, 1017, 1041
BseSI	GKGCMC	1 cut(s)	465
BseX3I	CGGCCG	1 cut(s)	840
BseXI	GCAGC	5 cut(s)	269, 321, 412, 535, 610
BseYI	CCCAGC	1 cut(s)	421
Bsh1285I	CGRYCG	1 cut(s)	843
BshFI	GGCC	1 cut(s)	842
BshVI	ATCGAT	1 cut(s)	122
BsiEI	CGRYCG	1 cut(s)	843
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	771
BslFI	GGGAC	3 cut(s)	198, 404, 806
BslI	CCNNNNNNNGG	2 cut(s)	202, 740
BsmFI	GGGAC	3 cut(s)	198, 404, 806
BsnI	GGCC	1 cut(s)	842
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp19I	CCATGG	1 cut(s)	466
BspACI	CCGC	4 cut(s)	36, 85, 88, 308
BspANI	GGCC	1 cut(s)	842
BspCNI	CTCAG	2 cut(s)	45, 861
BspDI	ATCGAT	1 cut(s)	122
BspHI	TCATGA	2 cut(s)	897, 1175
BspLI	GGNNCC	1 cut(s)	373
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	4 cut(s)	36, 127, 446, 1111
BsrI	ACTGG	5 cut(s)	26, 376, 610, 1017, 1041
BssECI	CCNNGG	2 cut(s)	132, 466
BssSI	CACGAG	2 cut(s)	735, 1154
BssT1I	CCWWGG	1 cut(s)	466
Bst2BI	CACGAG	2 cut(s)	735, 1154
Bst4CI	ACNGT	3 cut(s)	107, 133, 601
BstBAI	YACGTR	1 cut(s)	235
BstC8I	GCNNGC	2 cut(s)	7, 730
BstDEI	CTNAG	3 cut(s)	32, 456, 869
BstDSI	CCRYGG	2 cut(s)	132, 466
BstEII	GGTNACC	1 cut(s)	136
BstF5I	GGATG	3 cut(s)	355, 1072, 1153
BstMCI	CGRYCG	1 cut(s)	843
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 548, 629
BstPI	GGTNACC	1 cut(s)	136
BstSLI	GKGCMC	1 cut(s)	465
BstV1I	GCAGC	5 cut(s)	269, 321, 412, 535, 610
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BstZI	CGGCCG	1 cut(s)	840
Bsu15I	ATCGAT	1 cut(s)	122
Bsu36I	CCTNAGG	1 cut(s)	456
BsuI	GTATCC	1 cut(s)	659
BsuRI	GGCC	1 cut(s)	842
BsuTUI	ATCGAT	1 cut(s)	122
BtgI	CCRYGG	2 cut(s)	132, 466
BtrI	CACGTC	1 cut(s)	790
BtsCI	GGATG	3 cut(s)	355, 1072, 1153
BtsIMutI	CAGTG	3 cut(s)	486, 603, 1034
Cac8I	GCNNGC	2 cut(s)	7, 730
CaiI	CAGNNNCTG	2 cut(s)	544, 605
CciI	TCATGA	2 cut(s)	897, 1175
Cfr13I	GGNCC	1 cut(s)	1095
ClaI	ATCGAT	1 cut(s)	122
CseI	GACGC	1 cut(s)	492
Csp6I	GTAC	2 cut(s)	232, 563
CviAII	CATG	8 cut(s)	263, 386, 467, 616, 854, 898, 968, 1176
CviQI	GTAC	2 cut(s)	232, 563
DdeI	CTNAG	3 cut(s)	32, 456, 869
DraI	TTTAAA	1 cut(s)	639
DriI	GACNNNNNGTC	1 cut(s)	502
EaeI	YGGCCR	1 cut(s)	840
EagI	CGGCCG	1 cut(s)	840
Eam1105I	GACNNNNNGTC	1 cut(s)	502
EciI	GGCGGA	1 cut(s)	74
EclXI	CGGCCG	1 cut(s)	840
Eco130I	CCWWGG	1 cut(s)	466
Eco32I	GATATC	1 cut(s)	493
Eco47I	GGWCC	1 cut(s)	1095
Eco52I	CGGCCG	1 cut(s)	840
Eco81I	CCTNAGG	1 cut(s)	456
Eco91I	GGTNACC	1 cut(s)	136
EcoO65I	GGTNACC	1 cut(s)	136
EcoRV	GATATC	1 cut(s)	493
EcoT14I	CCWWGG	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	466
FaeI	CATG	8 cut(s)	266, 389, 470, 619, 857, 901, 971, 1179
FaqI	GGGAC	3 cut(s)	198, 404, 806
FatI	CATG	8 cut(s)	262, 385, 466, 615, 853, 897, 967, 1175
FbaI	TGATCA	2 cut(s)	921, 1150
Fnu4HI	GCNGC	7 cut(s)	37, 88, 258, 335, 426, 549, 624
FokI	GGATG	3 cut(s)	362, 1079, 1160
Fsp4HI	GCNGC	7 cut(s)	37, 88, 258, 335, 426, 549, 624
FspBI	CTAG	2 cut(s)	6, 338
GluI	GCNGC	7 cut(s)	37, 88, 258, 335, 426, 549, 624
GsaI	CCCAGC	1 cut(s)	425
GsuI	CTGGAG	1 cut(s)	974
HaeIII	GGCC	1 cut(s)	842
HapII	CCGG	1 cut(s)	771
HgaI	GACGC	1 cut(s)	492
Hin1II	CATG	8 cut(s)	266, 389, 470, 619, 857, 901, 971, 1179
HinfI	GANTC	3 cut(s)	873, 878, 1172
HpaII	CCGG	1 cut(s)	771
HphI	GGTGA	5 cut(s)	119, 148, 250, 322, 593
Hpy166II	GTNNAC	4 cut(s)	463, 961, 1042, 1095
Hpy188I	TCNGA	1 cut(s)	1003
Hpy8I	GTNNAC	4 cut(s)	463, 961, 1042, 1095
HpyAV	CCTTC	3 cut(s)	19, 317, 1057
HpyCH4III	ACNGT	3 cut(s)	107, 133, 601
HpyCH4IV	ACGT	2 cut(s)	234, 789
HpyCH4V	TGCA	7 cut(s)	14, 257, 463, 946, 967, 977, 1085
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 548, 629
HpyF3I	CTNAG	3 cut(s)	32, 456, 869
HpySE526I	ACGT	2 cut(s)	234, 789
Hsp92II	CATG	8 cut(s)	266, 389, 470, 619, 857, 901, 971, 1179
Ksp22I	TGATCA	2 cut(s)	921, 1150
Lsp1109I	GCAGC	5 cut(s)	269, 321, 412, 535, 610
LweI	GCATC	1 cut(s)	411
MaeI	CTAG	2 cut(s)	6, 338
MaeII	ACGT	2 cut(s)	234, 789
MaeIII	GTNAC	6 cut(s)	136, 310, 601, 608, 709, 799
MboII	GAAGA	5 cut(s)	50, 596, 695, 776, 1114
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	465
MluCI	AATT	3 cut(s)	244, 412, 526
MlyI	GAGTC	1 cut(s)	872
MmeI	TCCRAC	3 cut(s)	721, 838, 1125
MnlI	CCTC	9 cut(s)	46, 78, 180, 339, 362, 517, 742, 744, 949
MroXI	GAANNNNTTC	1 cut(s)	783
MseI	TTAA	3 cut(s)	555, 638, 993
MslI	CAYNNNNRTG	1 cut(s)	105
MspA1I	CMGCKG	2 cut(s)	36, 425
MspI	CCGG	1 cut(s)	771
MwoI	GCNNNNNNNGC	3 cut(s)	11, 548, 629
NcoI	CCATGG	1 cut(s)	466
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	8 cut(s)	266, 389, 470, 619, 857, 901, 971, 1179
NlaIV	GGNNCC	1 cut(s)	373
NmuCI	GTSAC	5 cut(s)	136, 310, 601, 608, 709
OliI	CACNNNNGTG	1 cut(s)	105
PagI	TCATGA	2 cut(s)	897, 1175
PdmI	GAANNNNTTC	1 cut(s)	783
PfeI	GAWTC	1 cut(s)	873
PflFI	GACNNNGTC	1 cut(s)	881
PflMI	CCANNNNNTGG	1 cut(s)	202
PkrI	GCNGC	7 cut(s)	38, 89, 259, 336, 427, 550, 625
PleI	GAGTC	1 cut(s)	872
PpsI	GAGTC	1 cut(s)	872
Ppu21I	YACGTR	1 cut(s)	235
PshBI	ATTAAT	1 cut(s)	993
PspEI	GGTNACC	1 cut(s)	136
PspFI	CCCAGC	1 cut(s)	421
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	1 cut(s)	1095
PstNI	CAGNNNCTG	2 cut(s)	544, 605
PsuI	RGATCY	1 cut(s)	28
PsyI	GACNNNGTC	1 cut(s)	881
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	2 cut(s)	233, 564
RsaNI	GTAC	2 cut(s)	232, 563
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	555, 638, 993
SatI	GCNGC	7 cut(s)	37, 88, 258, 335, 426, 549, 624
Sau96I	GGNCC	1 cut(s)	1095
ScaI	AGTACT	1 cut(s)	564
SchI	GAGTC	1 cut(s)	872
SduI	GDGCHC	1 cut(s)	465
SfaNI	GCATC	1 cut(s)	411
SinI	GGWCC	1 cut(s)	1095
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	3 cut(s)	244, 412, 526
SsiI	CCGC	4 cut(s)	36, 85, 88, 308
SspMI	CTAG	2 cut(s)	6, 338
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	3 cut(s)	107, 133, 601
TaiI	ACGT	2 cut(s)	237, 792
TaqI	TCGA	7 cut(s)	63, 122, 152, 172, 495, 517, 876
TaqII	GACCGA	2 cut(s)	155, 1112
TasI	AATT	3 cut(s)	244, 412, 526
TatI	WGTACW	1 cut(s)	562
TauI	GCSGC	2 cut(s)	39, 90
TfiI	GAWTC	1 cut(s)	873
Tru1I	TTAA	3 cut(s)	555, 638, 993
Tru9I	TTAA	3 cut(s)	555, 638, 993
TscAI	CASTG	3 cut(s)	493, 610, 1041
TseFI	GTSAC	5 cut(s)	136, 310, 601, 608, 709
TseI	GCWGC	5 cut(s)	257, 334, 425, 548, 623
Tsp45I	GTSAC	5 cut(s)	136, 310, 601, 608, 709
TspDTI	ATGAA	7 cut(s)	336, 402, 585, 842, 886, 914, 1083
TspGWI	ACGGA	2 cut(s)	177, 678
TspRI	CASTG	3 cut(s)	493, 610, 1041
Tth111I	GACNNNGTC	1 cut(s)	881
Van91I	CCANNNNNTGG	1 cut(s)	202
VneI	GTGCAC	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	1095
VspI	ATTAAT	1 cut(s)	993
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1127
XmnI	GAANNNNTTC	1 cut(s)	783
XspI	CTAG	2 cut(s)	6, 338
ZrmI	AGTACT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.