Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002154

Physical Location & Seq

Genomic Coordinates Forward (+)

7649289 .. 7651155

Gene Structure 1867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1058700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGATACCATAGCAACAAGGTGGAGGCTTCTTGGTGGCGAAACTGATTGGGAGGGTCTACTTGACCCTCTCGACATTGATCTCCGTCGCTGTATCCTTCACTCTGGCGAAAGAGTTGCCGCCATTGGCGACTCCTTCATCAGTGATCCAAGATCGAAGAATTGTGGACTTCCCCGTTACACAAAGACACATTTGTTCTCTAAGGTGGGTTTGGAGAATTCTAATCCGTACAAGTACACTGTGAATAAATATATATATGCAGCAACAGAAGTTTTACCCGGGAAATCGATCTGGTTAGGTTATGTGGCGGTGACAACGGATGAGGGAAAGGAGGTGTTAGGGAGGAGGGACATTTTGGTTACATGGAGAGGAACTGAACTGGATGCAGAGTGGGGTGTTGACTTACTGTTTGATTTAGTGTCAGCTTCTGATATTCTGGGAGACAAGTATGATCCTAAGGTGCACCATGGTTTTCATTCCTATTACAATTCTGCCGACCCTGAATCTCCATACAGTAAAACTAGTTGTAGAGCACAGGTTTTGACTGCAATTAAAGAAGTGGTGGATCAATACAAGGATGAGGAAATCAGCATAACTGTTTGTGGCCACAGCATGGGCGGTGCATTTGCAATTTTAAATGCTACAGACATAGTTTGTAATGGGTACAACAAACCTACAGACCGTCCAGACAAAGCCTGTCTTGTTACATCCATTGTGTTTGCTAGCCCTCGTCTTGGAGATCAAGGTTTCCACGACGTATTCTCAAGTCTTAAAAATCTTCACGTTTTGCGAGTCACAAATAGCTACGATATAGTCCCTCACTTACCACCGTTAGAAAAGTATGTTGATGTCGGAAAAGAGCTGAAAATTGACACCCTCAAGTCGCCCTATTTGAAGAATGCAAAAAAAGACGCGCACCGTTTGGAGATTTACTTACATGGAGTTGCAGGAACACAAGGGCGAAATGGTTTTCAATTGGTAATCAACCGTGATATTGCATTAGTAAACAAAAAGTTGGATGGTCTAAAGGATGAATATAATGTAATTGTTAAATGGTGGACTGAAAAGAACAAGTCTATGGTTCAAATGGATGATGGCTCTTGGGTGCTGTTGGATCATGAAAAGGATGATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

379

Amino Acids

42.49

Weight (kDa)

5.86

Isoelectric Point (pI)

23.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	120 - 278	7.1e-32	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19750 FvH4_5g19760
malus_domestica	MD04G1058700.v1.1
prunus_persica	Prupe.5G062500_v2.0.a1 Prupe.5G062600_v2.0.a1 Prupe.5G062700_v2.0.a1
pyrus_communis	pycom04g05260
rosa_chinensis	RchiOBHm_Chr7g0203651 RchiOBHm_Chr7g0203681 RchiOBHm_Chr7g0204521 RchiOBHm_Chr7g0204541
rosa_laevigata	RLG00000003452 RLG00000003453 RLG00000003512
rosa_multiflora	Rmu_co8274427.1_g000001 Rmu_co8340383.1_g000001 Rmu_sc0005354.1_g000007 Rmu_ssc0000443.1_g000023 Rmu_ssc0000443.1_g000033
rosa_roxburghii	Rroxscaffold_3G00253010 Rroxscaffold_3G00253020 Rroxscaffold_3G00253540 Rroxscaffold_3G00253610 Rroxscaffold_6G00397050 Rroxscaffold_6G00397100
rosa_rugosa	Rorug07G0078000 Rorug07G0084900 Rorug07G0085000
rosa_samantha	Rh7AG207600 Rh7AG214200 Rh7AG214300 Rh7BG206900 Rh7BG211700 Rh7BG211800 Rh7CG219900 Rh7CG227300 Rh7DG214500 Rh7DG214700 Rh7DG221800 Rh7DG222000
rosa_wichuraiana	Rw7G018100 Rw7G018570 Rw7G018580 Rw7G018590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	613
AccI	GTMKAC	1 cut(s)	58
AccII	CGCG	1 cut(s)	914
AciI	CCGC	3 cut(s)	120, 308, 618
AclWI	GGATC	4 cut(s)	140, 446, 573, 1122
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	1 cut(s)	217
AfaI	GTAC	3 cut(s)	230, 236, 665
AfiI	CCNNNNNNNGG	2 cut(s)	613, 734
AgsI	TTSAA	3 cut(s)	895, 974, 1085
AhlI	ACTAGT	1 cut(s)	521
AluBI	AGCT	3 cut(s)	425, 804, 862
AluI	AGCT	3 cut(s)	425, 804, 862
Alw21I	GWGCWC	2 cut(s)	465, 535
Alw26I	GTCTC	1 cut(s)	435
Alw44I	GTGCAC	1 cut(s)	461
AlwI	GGATC	4 cut(s)	140, 446, 573, 1122
AlwNI	CAGNNNCTG	1 cut(s)	428
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	1 cut(s)	604
ApaLI	GTGCAC	1 cut(s)	461
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	217
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
AspLEI	GCGC	1 cut(s)	916
AsuC2I	CCSGG	2 cut(s)	279, 280
AsuHPI	GGTGA	1 cut(s)	322
AsuNHI	GCTAGC	1 cut(s)	722
AvaI	CYCGRG	1 cut(s)	278
AxyI	CCTNAGG	1 cut(s)	456
BaeGI	GKGCMC	1 cut(s)	465
BalI	TGGCCA	1 cut(s)	606
Bbv12I	GWGCWC	2 cut(s)	465, 535
BbvI	GCAGC	1 cut(s)	272
BccI	CCATC	2 cut(s)	1013, 1088
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciVI	GTATCC	1 cut(s)	104
BcnI	CCSGG	2 cut(s)	279, 280
BcoDI	GTCTC	1 cut(s)	435
BcuI	ACTAGT	1 cut(s)	521
BfaI	CTAG	2 cut(s)	522, 723
BfmI	CTRYAG	2 cut(s)	642, 675
BfuI	GTATCC	1 cut(s)	104
BisI	GCNGC	2 cut(s)	120, 261
BlsI	GCNGC	2 cut(s)	121, 262
Bme1390I	CCNGG	2 cut(s)	279, 280
BmeT110I	CYCGRG	1 cut(s)	278
BmrFI	CCNGG	2 cut(s)	279, 280
BmsI	GCATC	1 cut(s)	373
BmtI	GCTAGC	1 cut(s)	726
BpuEI	CTTGAG	2 cut(s)	748, 863
BpuMI	CCSGG	2 cut(s)	279, 280
Bsa29I	ATCGAT	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	278, 466
Bsc4I	CCNNNNNNNGG	2 cut(s)	613, 734
Bse1I	ACTGG	1 cut(s)	384
Bse21I	CCTNAGG	1 cut(s)	456
BseCI	ATCGAT	1 cut(s)	287
BseDI	CCNNGG	2 cut(s)	278, 466
BseGI	GGATG	8 cut(s)	325, 388, 583, 707, 1024, 1036, 1096, 1132
BseLI	CCNNNNNNNGG	2 cut(s)	613, 734
BseNI	ACTGG	1 cut(s)	384
BseRI	GAGGAG	1 cut(s)	358
BseSI	GKGCMC	1 cut(s)	465
BseXI	GCAGC	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	914
BshFI	GGCC	1 cut(s)	606
BshVI	ATCGAT	1 cut(s)	287
BsiHKAI	GWGCWC	2 cut(s)	465, 535
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	2 cut(s)	362, 800
BslI	CCNNNNNNNGG	2 cut(s)	613, 734
BsmAI	GTCTC	1 cut(s)	435
BsmFI	GGGAC	2 cut(s)	362, 800
BsmI	GAATGC	1 cut(s)	904
BsnI	GGCC	1 cut(s)	606
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	465, 535
Bsp143I	GATC	8 cut(s)	79, 145, 152, 288, 451, 565, 739, 1114
Bsp19I	CCATGG	1 cut(s)	466
BspACI	CCGC	3 cut(s)	120, 308, 618
BspANI	GGCC	1 cut(s)	606
BspDI	ATCGAT	1 cut(s)	287
BspFNI	CGCG	1 cut(s)	914
BspHI	TCATGA	1 cut(s)	1117
BspOI	GCTAGC	1 cut(s)	726
BspPI	GGATC	4 cut(s)	140, 446, 573, 1122
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	2 cut(s)	278, 466
BssMI	GATC	8 cut(s)	79, 145, 152, 288, 451, 565, 739, 1114
BssT1I	CCWWGG	1 cut(s)	466
Bst4CI	ACNGT	8 cut(s)	241, 408, 515, 598, 683, 831, 920, 989
BstC8I	GCNNGC	1 cut(s)	724
BstDEI	CTNAG	2 cut(s)	201, 456
BstDSI	CCRYGG	1 cut(s)	466
BstF5I	GGATG	8 cut(s)	325, 388, 583, 707, 1024, 1036, 1096, 1132
BstFNI	CGCG	1 cut(s)	914
BstHHI	GCGC	1 cut(s)	916
BstKTI	GATC	8 cut(s)	82, 148, 155, 291, 454, 568, 742, 1117
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	8 cut(s)	79, 145, 152, 288, 451, 565, 739, 1114
BstSCI	CCNGG	2 cut(s)	277, 278
BstSFI	CTRYAG	2 cut(s)	642, 675
BstSLI	GKGCMC	1 cut(s)	465
BstUI	CGCG	1 cut(s)	914
BstV1I	GCAGC	1 cut(s)	272
Bsu15I	ATCGAT	1 cut(s)	287
Bsu36I	CCTNAGG	1 cut(s)	456
BsuI	GTATCC	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	606
BsuTUI	ATCGAT	1 cut(s)	287
BtgI	CCRYGG	1 cut(s)	466
BtsCI	GGATG	8 cut(s)	325, 388, 583, 707, 1024, 1036, 1096, 1132
BtsIMutI	CAGTG	2 cut(s)	148, 237
Cac8I	GCNNGC	1 cut(s)	724
CaiI	CAGNNNCTG	1 cut(s)	428
CciI	TCATGA	1 cut(s)	1117
CfoI	GCGC	1 cut(s)	916
Cfr9I	CCCGGG	1 cut(s)	278
ClaI	ATCGAT	1 cut(s)	287
CseI	GACGC	1 cut(s)	920
Csp6I	GTAC	3 cut(s)	229, 235, 664
CviAII	CATG	5 cut(s)	363, 467, 613, 938, 1118
CviJI	RGCY	8 cut(s)	28, 425, 606, 695, 726, 804, 862, 1098
CviKI_1	RGCY	8 cut(s)	28, 425, 606, 695, 726, 804, 862, 1098
CviQI	GTAC	3 cut(s)	229, 235, 664
DdeI	CTNAG	2 cut(s)	201, 456
DpnI	GATC	8 cut(s)	81, 147, 154, 290, 453, 567, 741, 1116
DpnII	GATC	8 cut(s)	79, 145, 152, 288, 451, 565, 739, 1114
DraI	TTTAAA	1 cut(s)	636
EaeI	YGGCCR	1 cut(s)	604
Eco130I	CCWWGG	1 cut(s)	466
Eco81I	CCTNAGG	1 cut(s)	456
Eco88I	CYCGRG	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	466
FaeI	CATG	5 cut(s)	366, 470, 616, 941, 1121
FalI	AAGNNNNNCTT	2 cut(s)	684, 716
FaqI	GGGAC	2 cut(s)	362, 800
FatI	CATG	5 cut(s)	362, 466, 612, 937, 1117
FblI	GTMKAC	1 cut(s)	58
Fnu4HI	GCNGC	2 cut(s)	120, 261
FokI	GGATG	7 cut(s)	332, 395, 590, 694, 1031, 1043, 1103
Fsp4HI	GCNGC	2 cut(s)	120, 261
FspBI	CTAG	2 cut(s)	522, 723
GlaI	GCGC	1 cut(s)	915
GluI	GCNGC	2 cut(s)	120, 261
HaeIII	GGCC	1 cut(s)	606
HapII	CCGG	1 cut(s)	279
HgaI	GACGC	1 cut(s)	920
HhaI	GCGC	1 cut(s)	916
Hin1II	CATG	5 cut(s)	366, 470, 616, 941, 1121
Hin6I	GCGC	1 cut(s)	914
HinP1I	GCGC	1 cut(s)	914
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	3 cut(s)	131, 503, 792
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	7 cut(s)	59, 167, 237, 400, 463, 1006, 1059
Hpy188I	TCNGA	2 cut(s)	430, 854
Hpy188III	TCNNGA	3 cut(s)	71, 686, 1118
Hpy8I	GTNNAC	7 cut(s)	59, 167, 237, 400, 463, 1006, 1059
Hpy99I	CGWCG	2 cut(s)	90, 758
HpyAV	CCTTC	2 cut(s)	107, 145
HpyCH4III	ACNGT	8 cut(s)	241, 408, 515, 598, 683, 831, 920, 989
HpyCH4IV	ACGT	2 cut(s)	756, 783
HpyCH4V	TGCA	9 cut(s)	260, 386, 463, 548, 623, 629, 902, 947, 998
HpyF3I	CTNAG	2 cut(s)	201, 456
HpySE526I	ACGT	2 cut(s)	756, 783
Hsp92II	CATG	5 cut(s)	366, 470, 616, 941, 1121
HspAI	GCGC	1 cut(s)	914
Kzo9I	GATC	8 cut(s)	79, 145, 152, 288, 451, 565, 739, 1114
Lsp1109I	GCAGC	1 cut(s)	272
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	2 cut(s)	522, 723
MaeII	ACGT	2 cut(s)	756, 783
MaeIII	GTNAC	5 cut(s)	176, 310, 358, 703, 793
MalI	GATC	8 cut(s)	81, 147, 154, 290, 453, 567, 741, 1116
MboI	GATC	8 cut(s)	79, 145, 152, 288, 451, 565, 739, 1114
MboII	GAAGA	3 cut(s)	169, 770, 907
MfeI	CAATTG	1 cut(s)	974
MhlI	GDGCHC	2 cut(s)	465, 535
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	8 cut(s)	160, 217, 487, 549, 630, 867, 974, 1044
MluNI	TGGCCA	1 cut(s)	606
MlyI	GAGTC	2 cut(s)	125, 801
MmeI	TCCRAC	3 cut(s)	832, 996, 1092
Mox20I	TGGCCA	1 cut(s)	606
MscI	TGGCCA	1 cut(s)	606
MseI	TTAA	5 cut(s)	552, 635, 771, 1050, 1135
Msp20I	TGGCCA	1 cut(s)	606
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	2 cut(s)	279, 280
MunI	CAATTG	1 cut(s)	974
Mva1269I	GAATGC	1 cut(s)	904
MvnI	CGCG	1 cut(s)	914
NciI	CCSGG	2 cut(s)	279, 280
NcoI	CCATGG	1 cut(s)	466
NdeII	GATC	8 cut(s)	79, 145, 152, 288, 451, 565, 739, 1114
NheI	GCTAGC	1 cut(s)	722
NlaIII	CATG	5 cut(s)	366, 470, 616, 941, 1121
NmuCI	GTSAC	2 cut(s)	310, 793
PagI	TCATGA	1 cut(s)	1117
PctI	GAATGC	1 cut(s)	904
PfeI	GAWTC	1 cut(s)	503
PflMI	CCANNNNNTGG	1 cut(s)	613
PkrI	GCNGC	2 cut(s)	121, 262
PleI	GAGTC	2 cut(s)	125, 800
PpsI	GAGTC	2 cut(s)	125, 800
PstNI	CAGNNNCTG	1 cut(s)	428
RsaI	GTAC	3 cut(s)	230, 236, 665
RsaNI	GTAC	3 cut(s)	229, 235, 664
SaqAI	TTAA	5 cut(s)	552, 635, 771, 1050, 1135
SatI	GCNGC	2 cut(s)	120, 261
Sau3AI	GATC	8 cut(s)	79, 145, 152, 288, 451, 565, 739, 1114
SchI	GAGTC	2 cut(s)	125, 801
ScrFI	CCNGG	2 cut(s)	279, 280
SduI	GDGCHC	2 cut(s)	465, 535
SfaNI	GCATC	1 cut(s)	373
SfcI	CTRYAG	2 cut(s)	642, 675
SmaI	CCCGGG	1 cut(s)	280
SmlI	CTYRAG	2 cut(s)	763, 878
SmoI	CTYRAG	2 cut(s)	763, 878
SpeI	ACTAGT	1 cut(s)	521
Sse9I	AATT	8 cut(s)	160, 217, 487, 549, 630, 867, 974, 1044
SsiI	CCGC	3 cut(s)	120, 308, 618
SspMI	CTAG	2 cut(s)	522, 723
StyD4I	CCNGG	2 cut(s)	277, 278
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	8 cut(s)	241, 408, 515, 598, 683, 831, 920, 989
TaiI	ACGT	2 cut(s)	759, 786
TaqI	TCGA	3 cut(s)	72, 155, 287
TasI	AATT	8 cut(s)	160, 217, 487, 549, 630, 867, 974, 1044
TatI	WGTACW	1 cut(s)	234
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	503
Tru1I	TTAA	5 cut(s)	552, 635, 771, 1050, 1135
Tru9I	TTAA	5 cut(s)	552, 635, 771, 1050, 1135
TscAI	CASTG	2 cut(s)	148, 244
TseFI	GTSAC	2 cut(s)	310, 793
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	2 cut(s)	310, 793
TspDTI	ATGAA	4 cut(s)	127, 464, 1047, 1134
TspGWI	ACGGA	3 cut(s)	74, 216, 332
TspMI	CCCGGG	1 cut(s)	278
TspRI	CASTG	2 cut(s)	148, 244
Van91I	CCANNNNNTGG	1 cut(s)	613
VneI	GTGCAC	1 cut(s)	461
XapI	RAATTY	1 cut(s)	217
XmaI	CCCGGG	1 cut(s)	278
XmiI	GTMKAC	1 cut(s)	58
XspI	CTAG	2 cut(s)	522, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.