Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002154

Physical Location & Seq

Genomic Coordinates Reverse (-)

47603945 .. 47605688

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00253540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGCCGGAGGTATAGCAACAAGGTGGAGGGTTCTAAGTGGGGAAGACGAGTGGGAGGGTCTACTAGACCCTCTCGACATTGATCTCCGCCACTATATCATTCACTACGGGGAAAGGGCGGGAGCCGTAGCCGTGGTGAACGAACCAAAGTCGAAGAACTACCGACTTCCTCGATACTTAAAGGAACATTTGTTCTCAAAGATGGGTTTGCAGAGTGGTAACCCATACAAGTACGTGGTGAAAGAATACTTGTATGCAGCAATCCATCTGCCATTATCGATCGGGAAATCAAACTTTCTCGGTTTTGTTGCTGTTACAACAGATGAAGGAGCCAAAGTGTTGGGAAGGAGGGACGTTTTGATTTCTTGGAGAGGAACCCAGTTGGTACACGAGTGGCTTGTTGACGACGATATTGCTTTAGTTTCAGCTTCTGACATTCTGGGATCGAATAACGGACTCAATCCTTTGGTGCACCAAGGTTGGCTGTCCTACTACACTAATAAGGACATTCTGTCGCCACACAATCAACTACGTAGTTGCAGAGATCAGGTTCTAGCTGCACTTAAATCAGTACTAGAAGAATACAAGGATGAAGAAATCAGCATTACTGTCACTGGTCACAGCATGGGTGCTGCAATGGCAACTTTAAATGCAACCGATATTGTCTGTAACGGACACAACAAACCAACAGATCAATCGGACAAGCTGATTCCTGTGACAGCAATTGTGTTTGCCAGCCCCCGACTAGGCGATGAGGGATTCGAGAAGGTGTTTTCTGGTCTCGAAAACCTTCACGTCTTGCGTGTCACGAATGACCAAGATATTGTTCCTAAATTACCATATTTGGATGGTAAATATGTTCATGTTGGAAAAGAGTTGAGAATAGACAGTCTCAAGTCGACCTTCTTGAAGGTTATCCCTGAATCAGATGAAGTAGGAAGGCTTGGCAGTTTGCACGATCTGGAGGTCTACTTGCATGGTGTTGCAGGGACACAGGGAATCGAAAGTAATGATTTTAAATTGGAAGTGAATCGTGATCTCGCACTGGTAAACAAATATATTGACCTTCTGAAGGACGAAAATAAGGTAGTTGGTAGCTGGTGGACTGAGAAGAACAAGTCTATGATTCAAATGGATGATGGTTCTTGGGTCTTGGATGATGGTGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

390

Amino Acids

43.54

Weight (kDa)

5.34

Isoelectric Point (pI)

28.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	121 - 282	2.1e-32	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19750 FvH4_5g19760
malus_domestica	MD04G1058700.v1.1
prunus_persica	Prupe.5G062500_v2.0.a1 Prupe.5G062600_v2.0.a1 Prupe.5G062700_v2.0.a1
pyrus_communis	pycom04g05260
rosa_chinensis	RchiOBHm_Chr7g0203651 RchiOBHm_Chr7g0203681 RchiOBHm_Chr7g0204521 RchiOBHm_Chr7g0204541
rosa_laevigata	RLG00000003452 RLG00000003453 RLG00000003512
rosa_multiflora	Rmu_co8274427.1_g000001 Rmu_co8340383.1_g000001 Rmu_sc0005354.1_g000007 Rmu_ssc0000443.1_g000023 Rmu_ssc0000443.1_g000033
rosa_roxburghii	Rroxscaffold_3G00253010 Rroxscaffold_3G00253020 Rroxscaffold_3G00253540 Rroxscaffold_3G00253610 Rroxscaffold_6G00397050 Rroxscaffold_6G00397100
rosa_rugosa	Rorug07G0078000 Rorug07G0084900 Rorug07G0085000
rosa_samantha	Rh7AG207600 Rh7AG214200 Rh7AG214300 Rh7BG206900 Rh7BG211700 Rh7BG211800 Rh7CG219900 Rh7CG227300 Rh7DG214500 Rh7DG214700 Rh7DG221800 Rh7DG222000
rosa_wichuraiana	Rw7G018100 Rw7G018570 Rw7G018580 Rw7G018590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	61, 899, 969
AciI	CCGC	2 cut(s)	88, 119
AclWI	GGATC	1 cut(s)	451
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	1091
AfaI	GTAC	3 cut(s)	233, 387, 573
AfiI	CCNNNNNNNGG	2 cut(s)	746, 1072
AgsI	TTSAA	2 cut(s)	910, 1130
AhdI	GACNNNNNGTC	1 cut(s)	511
AjiI	CACGTC	1 cut(s)	796
AjuI	GAANNNNNNNTTGG	2 cut(s)	810, 842
AloI	GAACNNNNNNTCC	2 cut(s)	176, 208
AluBI	AGCT	4 cut(s)	428, 557, 706, 1098
AluI	AGCT	4 cut(s)	428, 557, 706, 1098
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	2 cut(s)	785, 896
Alw44I	GTGCAC	1 cut(s)	470
AlwI	GGATC	1 cut(s)	451
AlwNI	CAGNNNCTG	1 cut(s)	431
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	470
ApeKI	GCWGC	3 cut(s)	257, 557, 632
Asp700I	GAANNNNTTC	1 cut(s)	789
AsuHPI	GGTGA	2 cut(s)	148, 250
BaeGI	GKGCMC	1 cut(s)	474
BaeI	ACNNNNGTAYC	2 cut(s)	377, 410
BauI	CACGAG	1 cut(s)	389
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	3 cut(s)	269, 544, 619
BccI	CCATC	5 cut(s)	196, 273, 842, 1133, 1154
BceAI	ACGGC	2 cut(s)	110, 116
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BcoDI	GTCTC	2 cut(s)	785, 896
BfaI	CTAG	4 cut(s)	65, 554, 575, 746
BisI	GCNGC	3 cut(s)	258, 558, 633
BlsI	GCNGC	3 cut(s)	259, 559, 634
BmcAI	AGTACT	1 cut(s)	573
BmeRI	GACNNNNNGTC	1 cut(s)	511
BmgBI	CACGTC	1 cut(s)	796
BmiI	GGNNCC	3 cut(s)	124, 331, 376
BmrI	ACTGGG	1 cut(s)	373
BmuI	ACTGGG	1 cut(s)	373
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	983
BpuEI	CTTGAG	1 cut(s)	878
Bsa29I	ATCGAT	1 cut(s)	278
BsaAI	YACGTR	2 cut(s)	235, 533
BsaI	GGTCTC	1 cut(s)	785
BsaJI	CCNNGG	2 cut(s)	132, 475
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bsc4I	CCNNNNNNNGG	2 cut(s)	746, 1072
Bse1I	ACTGG	3 cut(s)	379, 619, 1050
Bse3DI	GCAATG	1 cut(s)	642
BseCI	ATCGAT	1 cut(s)	278
BseDI	CCNNGG	2 cut(s)	132, 475
BseGI	GGATG	4 cut(s)	595, 853, 1141, 1162
BseLI	CCNNNNNNNGG	2 cut(s)	746, 1072
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	1 cut(s)	1098
BseNI	ACTGG	3 cut(s)	379, 619, 1050
BseSI	GKGCMC	1 cut(s)	474
BseXI	GCAGC	3 cut(s)	269, 544, 619
BsgI	GTGCAG	1 cut(s)	543
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	2 cut(s)	365, 1003
BslI	CCNNNNNNNGG	2 cut(s)	746, 1072
BsmAI	GTCTC	2 cut(s)	785, 896
BsmFI	GGGAC	2 cut(s)	365, 1003
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	785
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	7 cut(s)	82, 279, 443, 544, 691, 958, 1036
BspACI	CCGC	2 cut(s)	88, 119
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	1099
BspDI	ATCGAT	1 cut(s)	278
BspLI	GGNNCC	3 cut(s)	124, 331, 376
BspPI	GGATC	1 cut(s)	451
BspTNI	GGTCTC	1 cut(s)	785
BsrDI	GCAATG	1 cut(s)	642
BsrI	ACTGG	3 cut(s)	379, 619, 1050
BssECI	CCNNGG	2 cut(s)	132, 475
BssMI	GATC	7 cut(s)	82, 279, 443, 544, 691, 958, 1036
BssSI	CACGAG	1 cut(s)	389
BssT1I	CCWWGG	1 cut(s)	475
Bst2BI	CACGAG	1 cut(s)	389
Bst4CI	ACNGT	2 cut(s)	610, 890
BstBAI	YACGTR	2 cut(s)	235, 533
BstC8I	GCNNGC	1 cut(s)	736
BstDEI	CTNAG	2 cut(s)	35, 1107
BstDSI	CCRYGG	1 cut(s)	132
BstEII	GGTNACC	1 cut(s)	218
BstENI	CCTNNNNNAGG	1 cut(s)	1070
BstF5I	GGATG	4 cut(s)	595, 853, 1141, 1162
BstKTI	GATC	7 cut(s)	85, 282, 446, 547, 694, 961, 1039
BstMAI	GTCTC	2 cut(s)	785, 896
BstMBI	GATC	7 cut(s)	82, 279, 443, 544, 691, 958, 1036
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	638
BstPI	GGTNACC	1 cut(s)	218
BstSLI	GKGCMC	1 cut(s)	474
BstSNI	TACGTA	1 cut(s)	533
BstV1I	GCAGC	3 cut(s)	269, 544, 619
BstV2I	GAAGAC	1 cut(s)	51
BstXI	CCANNNNNNTGG	1 cut(s)	340
Bsu15I	ATCGAT	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	278
BtgI	CCRYGG	1 cut(s)	132
BtgZI	GCGATG	1 cut(s)	765
BtrI	CACGTC	1 cut(s)	796
BtsCI	GGATG	4 cut(s)	595, 853, 1141, 1162
BtsIMutI	CAGTG	2 cut(s)	612, 1043
Cac8I	GCNNGC	1 cut(s)	736
CaiI	CAGNNNCTG	1 cut(s)	431
ClaI	ATCGAT	1 cut(s)	278
Csp6I	GTAC	3 cut(s)	232, 386, 572
CviAII	CATG	3 cut(s)	625, 863, 977
CviQI	GTAC	3 cut(s)	232, 386, 572
DdeI	CTNAG	2 cut(s)	35, 1107
DpnI	GATC	7 cut(s)	84, 281, 445, 546, 693, 960, 1038
DpnII	GATC	7 cut(s)	82, 279, 443, 544, 691, 958, 1036
DraI	TTTAAA	2 cut(s)	648, 1018
DriI	GACNNNNNGTC	1 cut(s)	511
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	511
EciI	GGCGGA	1 cut(s)	77
Eco105I	TACGTA	1 cut(s)	533
Eco130I	CCWWGG	1 cut(s)	475
Eco31I	GGTCTC	1 cut(s)	785
Eco57I	CTGAAG	1 cut(s)	1091
Eco91I	GGTNACC	1 cut(s)	218
EcoNI	CCTNNNNNAGG	1 cut(s)	1070
EcoO65I	GGTNACC	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	475
FaeI	CATG	3 cut(s)	628, 866, 980
FalI	AAGNNNNNCTT	2 cut(s)	887, 919
FaqI	GGGAC	2 cut(s)	365, 1003
FatI	CATG	3 cut(s)	624, 862, 976
FauI	CCCGC	1 cut(s)	112
FblI	GTMKAC	3 cut(s)	61, 899, 969
Fnu4HI	GCNGC	3 cut(s)	258, 558, 633
FokI	GGATG	4 cut(s)	602, 860, 1148, 1169
Fsp4HI	GCNGC	3 cut(s)	258, 558, 633
FspBI	CTAG	4 cut(s)	65, 554, 575, 746
GluI	GCNGC	3 cut(s)	258, 558, 633
GsuI	CTGGAG	1 cut(s)	983
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	3 cut(s)	628, 866, 980
HincII	GTYRAC	2 cut(s)	403, 900
HindII	GTYRAC	2 cut(s)	403, 900
HinfI	GANTC	8 cut(s)	456, 709, 759, 923, 999, 1030, 1126, 1166
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	2 cut(s)	148, 250
Hpy166II	GTNNAC	9 cut(s)	62, 139, 388, 403, 472, 900, 970, 1051, 1104
Hpy188I	TCNGA	4 cut(s)	433, 700, 928, 1071
Hpy188III	TCNNGA	9 cut(s)	74, 283, 763, 782, 808, 907, 962, 1034, 1170
Hpy8I	GTNNAC	9 cut(s)	62, 139, 388, 403, 472, 900, 970, 1051, 1104
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	9 cut(s)	320, 339, 760, 800, 904, 913, 933, 1066, 1076
HpyCH4III	ACNGT	2 cut(s)	610, 890
HpyCH4IV	ACGT	4 cut(s)	234, 354, 532, 795
HpyF10VI	GCNNNNNNNGC	1 cut(s)	638
HpyF3I	CTNAG	2 cut(s)	35, 1107
HpySE526I	ACGT	4 cut(s)	234, 354, 532, 795
Hsp92II	CATG	3 cut(s)	628, 866, 980
Kzo9I	GATC	7 cut(s)	82, 279, 443, 544, 691, 958, 1036
LmnI	GCTCC	2 cut(s)	122, 329
Lsp1109I	GCAGC	3 cut(s)	269, 544, 619
MaeI	CTAG	4 cut(s)	65, 554, 575, 746
MaeII	ACGT	4 cut(s)	234, 354, 532, 795
MaeIII	GTNAC	7 cut(s)	218, 313, 610, 617, 668, 715, 805
MalI	GATC	7 cut(s)	84, 281, 445, 546, 693, 960, 1038
MboI	GATC	7 cut(s)	82, 279, 443, 544, 691, 958, 1036
MboII	GAAGA	5 cut(s)	56, 166, 590, 605, 1123
MfeI	CAATTG	1 cut(s)	723
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	3 cut(s)	723, 833, 1019
MlyI	GAGTC	1 cut(s)	450
MmeI	TCCRAC	1 cut(s)	847
MnlI	CCTC	8 cut(s)	21, 49, 81, 180, 342, 365, 748, 958
MroXI	GAANNNNTTC	1 cut(s)	789
MseI	TTAA	4 cut(s)	179, 564, 647, 1017
MspI	CCGG	1 cut(s)	6
MunI	CAATTG	1 cut(s)	723
MwoI	GCNNNNNNNGC	1 cut(s)	638
NdeII	GATC	7 cut(s)	82, 279, 443, 544, 691, 958, 1036
NlaIII	CATG	3 cut(s)	628, 866, 980
NlaIV	GGNNCC	3 cut(s)	124, 331, 376
NmuCI	GTSAC	4 cut(s)	610, 617, 715, 805
PdmI	GAANNNNTTC	1 cut(s)	789
PfeI	GAWTC	6 cut(s)	709, 759, 923, 999, 1030, 1126
PkrI	GCNGC	3 cut(s)	259, 559, 634
Ple19I	CGATCG	1 cut(s)	282
PleI	GAGTC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	450
Ppu21I	YACGTR	2 cut(s)	235, 533
PspEI	GGTNACC	1 cut(s)	218
PspN4I	GGNNCC	3 cut(s)	124, 331, 376
PstNI	CAGNNNCTG	1 cut(s)	431
PvuI	CGATCG	1 cut(s)	282
RsaI	GTAC	3 cut(s)	233, 387, 573
RsaNI	GTAC	3 cut(s)	232, 386, 572
SalI	GTCGAC	1 cut(s)	898
SaqAI	TTAA	4 cut(s)	179, 564, 647, 1017
SatI	GCNGC	3 cut(s)	258, 558, 633
Sau3AI	GATC	7 cut(s)	82, 279, 443, 544, 691, 958, 1036
ScaI	AGTACT	1 cut(s)	573
SchI	GAGTC	1 cut(s)	450
SduI	GDGCHC	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	893
SmoI	CTYRAG	1 cut(s)	893
SnaBI	TACGTA	1 cut(s)	533
Sse9I	AATT	3 cut(s)	723, 833, 1019
SsiI	CCGC	2 cut(s)	88, 119
SspMI	CTAG	4 cut(s)	65, 554, 575, 746
StyI	CCWWGG	1 cut(s)	475
TaaI	ACNGT	2 cut(s)	610, 890
TaiI	ACGT	4 cut(s)	237, 357, 535, 798
TaqI	TCGA	9 cut(s)	75, 152, 172, 278, 446, 762, 783, 899, 1002
TasI	AATT	3 cut(s)	723, 833, 1019
TatI	WGTACW	1 cut(s)	571
TfiI	GAWTC	6 cut(s)	709, 759, 923, 999, 1030, 1126
Tru1I	TTAA	4 cut(s)	179, 564, 647, 1017
Tru9I	TTAA	4 cut(s)	179, 564, 647, 1017
TscAI	CASTG	2 cut(s)	619, 1050
TseFI	GTSAC	4 cut(s)	610, 617, 715, 805
TseI	GCWGC	3 cut(s)	257, 557, 632
Tsp45I	GTSAC	4 cut(s)	610, 617, 715, 805
TspDTI	ATGAA	4 cut(s)	339, 606, 851, 945
TspGWI	ACGGA	2 cut(s)	468, 687
TspRI	CASTG	2 cut(s)	619, 1050
VneI	GTGCAC	1 cut(s)	470
XagI	CCTNNNNNAGG	1 cut(s)	1070
XmiI	GTMKAC	3 cut(s)	61, 899, 969
XmnI	GAANNNNTTC	1 cut(s)	789
XspI	CTAG	4 cut(s)	65, 554, 575, 746
ZrmI	AGTACT	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.