Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002154

Physical Location & Seq

Genomic Coordinates Reverse (-)

21562555 .. 21564605

Gene Structure 2051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG221800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGGTAGCATAGCAACAAGGTGGAGGCTTCTGAGCGGCGAGAACGAGTGGGCGGGTTTATTGGATCCTCTCGATATAGATCTCCGCCGCTACATCATTCACTATGGTGAAAGGGCCGGAGCCATAGGCGATGGCTTCATCAAGGAAACAAAATCAAGCAACTGTGGACTTCCGCGATATGCAAAGAGCCAATTCTTCACCAAGGTGGGTTTGGAGAACTACAACCCTTATAAGTACGTGGTGAAGAAGTATTTGTATGCAGCAACAATGTTATCTCCCGGCAGATCGAACTGGTTGGCTTATGTTGCGGTGGCAACGGATGAGGGAAAGGAAGTGTTGGGGAGGAGGGACATTTTGATTTCATGGAGAGGAACTGTGCTGGACGAAGAGGCCGGAATTGATTTGTTGTTCGATTTAGTCTCGGCTTCTGATATTCTGGGAAGTGAGAGTGGAGCTAAGGTGCACCATGGTTGGCATTCCTATTACACTAATGTGGACCCTGTTTCTCCATACACTAAAACTAGTTGTAGAGACCAGGTTTTAGCTACAATTAGAGAAGTAGTGGACCAATACAAGGATGAGGAAATAAGCGTAACTGTCACTGGCTACAGCATGGGTGCTGCATTTGCAATCTTGAATGCAACGGACATTGTTTACAATAGATACAATGTGCCTACTGCATATCCAGATAAAGCCTGCCTTGTTACATCCATTGTGTTCGCTAGCCCTCGTCTCGGAGACGAAGGATTCAGAAAAGTATTCAGTAGTCTCGAAAACCTTCATGTCTTACGCATCACAAATCTCCACGATGTTATAACTATTCTACCGCCATCAAGCAGTTATGTTCACGTTGGAAAAGAGTTGGAAATCGACACTCTCAAATCTCCCTACTTGAAGGATGCATCGCAGTCCCTACACAATTTGGAAGTTTACCTTCATGGAGTTGCAGGAACACAAGGGATAAATGGTTTCAAATTGGAGGTTTATCGTGATCTTGCATTAGTGAACAAAAAGCTGGATGGTCTAAACGACGAACATAATGTAGTTGCTAATTGGTGGACAGAGAAGAACAAGTCTATGGTTCAAATGGATAATGGCTCCTGGGTTTTGATGGATCGTGAGAAAGATGATGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

379

Amino Acids

42.51

Weight (kDa)

5.52

Isoelectric Point (pI)

28.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	120 - 278	2.1e-26	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19750 FvH4_5g19760
malus_domestica	MD04G1058700.v1.1
prunus_persica	Prupe.5G062500_v2.0.a1 Prupe.5G062600_v2.0.a1 Prupe.5G062700_v2.0.a1
pyrus_communis	pycom04g05260
rosa_chinensis	RchiOBHm_Chr7g0203651 RchiOBHm_Chr7g0203681 RchiOBHm_Chr7g0204521 RchiOBHm_Chr7g0204541
rosa_laevigata	RLG00000003452 RLG00000003453 RLG00000003512
rosa_multiflora	Rmu_co8274427.1_g000001 Rmu_co8340383.1_g000001 Rmu_sc0005354.1_g000007 Rmu_ssc0000443.1_g000023 Rmu_ssc0000443.1_g000033
rosa_roxburghii	Rroxscaffold_3G00253010 Rroxscaffold_3G00253020 Rroxscaffold_3G00253540 Rroxscaffold_3G00253610 Rroxscaffold_6G00397050 Rroxscaffold_6G00397100
rosa_rugosa	Rorug07G0078000 Rorug07G0084900 Rorug07G0085000
rosa_samantha	Rh7AG207600 Rh7AG214200 Rh7AG214300 Rh7BG206900 Rh7BG211700 Rh7BG211800 Rh7CG219900 Rh7CG227300 Rh7DG214500 Rh7DG214700 Rh7DG221800 Rh7DG222000
rosa_wichuraiana	Rw7G018100 Rw7G018570 Rw7G018580 Rw7G018590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	231, 815
AccBSI	CCGCTC	1 cut(s)	36
AccII	CGCG	1 cut(s)	175
AciI	CCGC	7 cut(s)	36, 53, 85, 88, 173, 308, 827
AclWI	GGATC	3 cut(s)	59, 72, 1122
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	2 cut(s)	574, 734
AgsI	TTSAA	4 cut(s)	637, 895, 973, 1085
AhlI	ACTAGT	1 cut(s)	521
AjnI	CCWGG	2 cut(s)	534, 1100
AleI	CACNNNNGTG	3 cut(s)	105, 203, 491
AluBI	AGCT	3 cut(s)	455, 545, 1015
AluI	AGCT	3 cut(s)	455, 545, 1015
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	5 cut(s)	424, 525, 732, 737, 773
Alw44I	GTGCAC	1 cut(s)	461
AlwI	GGATC	3 cut(s)	59, 72, 1122
AoxI	GGCC	2 cut(s)	114, 390
ApaLI	GTGCAC	1 cut(s)	461
ApeKI	GCWGC	2 cut(s)	260, 620
Asp700I	GAANNNNTTC	1 cut(s)	777
AspS9I	GGNCC	3 cut(s)	114, 496, 565
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	3 cut(s)	119, 190, 253
AsuNHI	GCTAGC	1 cut(s)	722
AvaII	GGWCC	2 cut(s)	496, 565
BaeGI	GKGCMC	1 cut(s)	465
BamHI	GGATCC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	2 cut(s)	272, 607
BccI	CCATC	4 cut(s)	125, 838, 1013, 1105
BciT130I	CCWGG	2 cut(s)	536, 1102
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	5 cut(s)	424, 525, 732, 737, 773
BcuI	ACTAGT	1 cut(s)	521
BfaI	CTAG	2 cut(s)	522, 723
BfmI	CTRYAG	1 cut(s)	607
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	4 cut(s)	37, 88, 261, 621
BlsI	GCNGC	4 cut(s)	38, 89, 262, 622
Bme1390I	CCNGG	3 cut(s)	279, 536, 1102
Bme18I	GGWCC	2 cut(s)	496, 565
BmgT120I	GGNCC	3 cut(s)	114, 496, 565
BmiI	GGNNCC	4 cut(s)	66, 121, 498, 1099
BmrFI	CCNGG	3 cut(s)	279, 536, 1102
BmsI	GCATC	3 cut(s)	801, 889, 911
BmtI	GCTAGC	1 cut(s)	726
Bpu10I	CCTNAGC	1 cut(s)	456
BpuMI	CCSGG	1 cut(s)	279
BsaAI	YACGTR	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	525
BsaJI	CCNNGG	3 cut(s)	201, 466, 1101
BsaXI	ACNNNNNCTCC	2 cut(s)	444, 474
Bsc4I	CCNNNNNNNGG	2 cut(s)	574, 734
Bse1I	ACTGG	2 cut(s)	296, 607
Bse8I	GATNNNNATC	1 cut(s)	78
BseBI	CCWGG	2 cut(s)	536, 1102
BseDI	CCNNGG	3 cut(s)	201, 466, 1101
BseGI	GGATG	5 cut(s)	325, 583, 707, 904, 1024
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	2 cut(s)	574, 734
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	2 cut(s)	296, 607
BseRI	GAGGAG	1 cut(s)	358
BseSI	GKGCMC	1 cut(s)	465
BseXI	GCAGC	2 cut(s)	272, 607
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	2 cut(s)	116, 392
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	3 cut(s)	117, 279, 393
BslFI	GGGAC	2 cut(s)	362, 895
BslI	CCNNNNNNNGG	2 cut(s)	574, 734
BsmAI	GTCTC	5 cut(s)	424, 525, 732, 737, 773
BsmBI	CGTCTC	2 cut(s)	732, 737
BsmFI	GGGAC	2 cut(s)	362, 895
BsmI	GAATGC	2 cut(s)	475, 643
BsnI	GGCC	2 cut(s)	116, 392
Bso31I	GGTCTC	1 cut(s)	525
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp143I	GATC	5 cut(s)	64, 79, 284, 991, 1114
Bsp19I	CCATGG	1 cut(s)	466
BspACI	CCGC	7 cut(s)	36, 53, 85, 88, 173, 308, 827
BspANI	GGCC	2 cut(s)	116, 392
BspCNI	CTCAG	1 cut(s)	24
BspFNI	CGCG	1 cut(s)	175
BspLI	GGNNCC	4 cut(s)	66, 121, 498, 1099
BspOI	GCTAGC	1 cut(s)	726
BspPI	GGATC	3 cut(s)	59, 72, 1122
BspTNI	GGTCTC	1 cut(s)	525
BsrBI	CCGCTC	1 cut(s)	36
BsrI	ACTGG	2 cut(s)	296, 607
BssECI	CCNNGG	3 cut(s)	201, 466, 1101
BssMI	GATC	5 cut(s)	64, 79, 284, 991, 1114
BssT1I	CCWWGG	2 cut(s)	201, 466
Bst2UI	CCWGG	2 cut(s)	536, 1102
Bst4CI	ACNGT	3 cut(s)	164, 376, 598
Bst6I	CTCTTC	1 cut(s)	381
BstBAI	YACGTR	1 cut(s)	238
BstC8I	GCNNGC	2 cut(s)	697, 724
BstDEI	CTNAG	2 cut(s)	32, 456
BstDSI	CCRYGG	1 cut(s)	466
BstF5I	GGATG	5 cut(s)	325, 583, 707, 904, 1024
BstFNI	CGCG	1 cut(s)	175
BstKTI	GATC	5 cut(s)	67, 82, 287, 994, 1117
BstMAI	GTCTC	5 cut(s)	424, 525, 732, 737, 773
BstMBI	GATC	5 cut(s)	64, 79, 284, 991, 1114
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 626
BstNI	CCWGG	2 cut(s)	536, 1102
BstSCI	CCNGG	3 cut(s)	277, 534, 1100
BstSFI	CTRYAG	1 cut(s)	607
BstSLI	GKGCMC	1 cut(s)	465
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	2 cut(s)	272, 607
BstX2I	RGATCY	2 cut(s)	64, 79
BstYI	RGATCY	2 cut(s)	64, 79
BsuRI	GGCC	2 cut(s)	116, 392
BtgI	CCRYGG	1 cut(s)	466
BtgZI	GCGATG	2 cut(s)	144, 888
BtsCI	GGATG	5 cut(s)	325, 583, 707, 904, 1024
BtsIMutI	CAGTG	1 cut(s)	600
Cac8I	GCNNGC	2 cut(s)	697, 724
Cfr13I	GGNCC	3 cut(s)	114, 496, 565
CsiI	ACCWGGT	1 cut(s)	534
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	5 cut(s)	363, 467, 613, 782, 938
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	2 cut(s)	32, 456
DpnI	GATC	5 cut(s)	66, 81, 286, 993, 1116
DpnII	GATC	5 cut(s)	64, 79, 284, 991, 1114
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
EciI	GGCGGA	1 cut(s)	74
Eco130I	CCWWGG	2 cut(s)	201, 466
Eco31I	GGTCTC	1 cut(s)	525
Eco47I	GGWCC	2 cut(s)	496, 565
EcoRII	CCWGG	2 cut(s)	534, 1100
EcoT14I	CCWWGG	2 cut(s)	201, 466
EcoT22I	ATGCAT	1 cut(s)	904
ErhI	CCWWGG	2 cut(s)	201, 466
Esp3I	CGTCTC	2 cut(s)	732, 737
FaeI	CATG	5 cut(s)	366, 470, 616, 785, 941
FalI	AAGNNNNNCTT	4 cut(s)	684, 716, 918, 950
FaqI	GGGAC	2 cut(s)	362, 895
FatI	CATG	5 cut(s)	362, 466, 612, 781, 937
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	4 cut(s)	37, 88, 261, 621
FokI	GGATG	5 cut(s)	332, 590, 694, 911, 1031
Fsp4HI	GCNGC	4 cut(s)	37, 88, 261, 621
FspBI	CTAG	2 cut(s)	522, 723
GluI	GCNGC	4 cut(s)	37, 88, 261, 621
HaeIII	GGCC	2 cut(s)	116, 392
HapII	CCGG	3 cut(s)	117, 279, 393
Hin1II	CATG	5 cut(s)	366, 470, 616, 785, 941
HinfI	GANTC	1 cut(s)	747
HpaII	CCGG	3 cut(s)	117, 279, 393
HphI	GGTGA	3 cut(s)	119, 190, 253
Hpy166II	GTNNAC	9 cut(s)	167, 463, 496, 565, 655, 847, 931, 1006, 1059
Hpy188I	TCNGA	4 cut(s)	33, 430, 737, 752
Hpy188III	TCNNGA	6 cut(s)	71, 634, 686, 770, 989, 1118
Hpy8I	GTNNAC	9 cut(s)	167, 463, 496, 565, 655, 847, 931, 1006, 1059
Hpy99I	CGWCG	1 cut(s)	1034
HpyAV	CCTTC	4 cut(s)	737, 788, 889, 944
HpyCH4III	ACNGT	3 cut(s)	164, 376, 598
HpyCH4IV	ACGT	2 cut(s)	237, 849
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 626
HpyF3I	CTNAG	2 cut(s)	32, 456
HpySE526I	ACGT	2 cut(s)	237, 849
Hsp92II	CATG	5 cut(s)	366, 470, 616, 785, 941
Kzo9I	GATC	5 cut(s)	64, 79, 284, 991, 1114
LmnI	GCTCC	3 cut(s)	119, 452, 1103
Lsp1109I	GCAGC	2 cut(s)	272, 607
LweI	GCATC	3 cut(s)	801, 889, 911
MabI	ACCWGGT	1 cut(s)	534
MaeI	CTAG	2 cut(s)	522, 723
MaeII	ACGT	2 cut(s)	237, 849
MaeIII	GTNAC	3 cut(s)	592, 598, 703
MalI	GATC	5 cut(s)	66, 81, 286, 993, 1116
MbiI	CCGCTC	1 cut(s)	36
MboI	GATC	5 cut(s)	64, 79, 284, 991, 1114
MboII	GAAGA	4 cut(s)	187, 256, 398, 1078
MflI	RGATCY	2 cut(s)	64, 79
MhlI	GDGCHC	1 cut(s)	465
MluCI	AATT	7 cut(s)	191, 396, 549, 919, 974, 1051, 1135
MmeI	TCCRAC	2 cut(s)	832, 843
Mph1103I	ATGCAT	1 cut(s)	904
MroXI	GAANNNNTTC	1 cut(s)	777
MslI	CAYNNNNRTG	3 cut(s)	105, 203, 491
MspI	CCGG	3 cut(s)	117, 279, 393
MspR9I	CCNGG	3 cut(s)	279, 536, 1102
Mva1269I	GAATGC	2 cut(s)	475, 643
MvaI	CCWGG	2 cut(s)	536, 1102
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	2 cut(s)	305, 626
NciI	CCSGG	1 cut(s)	279
NcoI	CCATGG	1 cut(s)	466
NdeII	GATC	5 cut(s)	64, 79, 284, 991, 1114
NheI	GCTAGC	1 cut(s)	722
NlaIII	CATG	5 cut(s)	366, 470, 616, 785, 941
NlaIV	GGNNCC	4 cut(s)	66, 121, 498, 1099
NmeAIII	GCCGAG	1 cut(s)	401
NmuCI	GTSAC	1 cut(s)	598
NsiI	ATGCAT	1 cut(s)	904
OliI	CACNNNNGTG	3 cut(s)	105, 203, 491
PctI	GAATGC	2 cut(s)	475, 643
PdmI	GAANNNNTTC	1 cut(s)	777
PfeI	GAWTC	1 cut(s)	747
PkrI	GCNGC	4 cut(s)	38, 89, 262, 622
Ppu21I	YACGTR	1 cut(s)	238
PsiI	TTATAA	2 cut(s)	231, 815
Psp6I	CCWGG	2 cut(s)	534, 1100
PspGI	CCWGG	2 cut(s)	534, 1100
PspN4I	GGNNCC	4 cut(s)	66, 121, 498, 1099
PspPI	GGNCC	3 cut(s)	114, 496, 565
PsuI	RGATCY	2 cut(s)	64, 79
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
RseI	CAYNNNNRTG	3 cut(s)	105, 203, 491
SatI	GCNGC	4 cut(s)	37, 88, 261, 621
Sau3AI	GATC	5 cut(s)	64, 79, 284, 991, 1114
Sau96I	GGNCC	3 cut(s)	114, 496, 565
ScrFI	CCNGG	3 cut(s)	279, 536, 1102
SduI	GDGCHC	1 cut(s)	465
SexAI	ACCWGGT	1 cut(s)	534
SfaNI	GCATC	3 cut(s)	801, 889, 911
SfcI	CTRYAG	1 cut(s)	607
SinI	GGWCC	2 cut(s)	496, 565
SmiMI	CAYNNNNRTG	3 cut(s)	105, 203, 491
SpeI	ACTAGT	1 cut(s)	521
Sse9I	AATT	7 cut(s)	191, 396, 549, 919, 974, 1051, 1135
SsiI	CCGC	7 cut(s)	36, 53, 85, 88, 173, 308, 827
SspMI	CTAG	2 cut(s)	522, 723
StyD4I	CCNGG	3 cut(s)	277, 534, 1100
StyI	CCWWGG	2 cut(s)	201, 466
TaaI	ACNGT	3 cut(s)	164, 376, 598
TaiI	ACGT	2 cut(s)	240, 852
TaqI	TCGA	5 cut(s)	72, 287, 411, 771, 870
TasI	AATT	7 cut(s)	191, 396, 549, 919, 974, 1051, 1135
TauI	GCSGC	2 cut(s)	39, 90
TfiI	GAWTC	1 cut(s)	747
TscAI	CASTG	1 cut(s)	607
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	2 cut(s)	260, 620
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	4 cut(s)	127, 351, 770, 926
TspGWI	ACGGA	2 cut(s)	332, 659
TspRI	CASTG	1 cut(s)	607
VneI	GTGCAC	1 cut(s)	461
VpaK11BI	GGWCC	2 cut(s)	496, 565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	777
XspI	CTAG	2 cut(s)	522, 723
Zsp2I	ATGCAT	1 cut(s)	904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.