Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002154

Physical Location & Seq

Genomic Coordinates Forward (+)

20150455 .. 20152349

Gene Structure 1895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG219900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGCCGGAGGTATAGCAACAAGGTGGAGGGTTCTAAGCGGTGAAGACGATTGGGAGGATTTATTAGACCCTCTCCACATTGATCTCCGCCACTATATCATTCACTGCGGTGAAAGGGCGGGAGCCGTAGCCGTGGTGCACGAACCAAAGTCGAAGAACTACCGACTTCCTCGATACTTAAAGGAACATTTGTTCTCAAAGATGGGTTTGCAGAGTGGTAACCCATACAAGTACGTGGTGAAAGAATACTTGTATGCAACAATCCCTCTGCTATCCATCGGGAAATCAAATTTTCTCGGTTTTGTTGCGGTTACAACAGATGAAGGAGCCAAAGTGTTGGGGAGGAGGGACGTTTTGATTTCTTGGAGAGGAACCCAGTTGGAACATGAGTATCTTGTGGACGCCGACACCGCTTTAGTTTCAGCTTCTGACATTCTGGGATCGAACAACGGACTCGATCCTTTGGTGCACCAAGGTTGGCTGTCCTACTACACTCATAAGGACATTCTGTCCCCACACAATAAACTACATAGTTGCAGAGATCAGGTTCTAGCTGCACTTAAATCAGTACTAGAAGAATACAAGGATGAAAAAATCAGCATTACTGTCACTGGTCACAGCATGGGTGCTGCAATAGCAACTTTAAACGCAACTGATATTGTCTGTAATGGACACAACAAACCCACAGATCAATCGGACAAGCTGATTCCTGTGACAGCAATTGTGTTTGCCAGCCCCCGACTAGGTGATGAGGGATTCGAGAAGGTGTTTTCTGGTCTCGAAAACCTTCACGTCTTGCGTGTCACTAATGACCAAGATATTGTCCCTAAATTACCATTGGACAGTAAATATGTTCATGTTGGAAAAGCATTGATAATAGACAGTCTCAAGTCGACCTACTTGAAGGTTATCCCTGAATCAGATAAAGTACGAAGGCTTGGCAGTTTGCACGATCTGGAGGTCTACTTGCATGGTGTTGCAGGGACACAGGGAACAGAAAGTAATGATTTTAAATTGGAAGTGAATCGTGATCTCGCACTGGTAAACAAATATATTGATCTTCTGAAGGACGAACATAAGGTAGTAGGTAGCTGGTGGACTGAGAAGAACAAGTCTATGATTCAAATGGATGATGGCTCTTGGGTCTTGGATGATGGTGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

388

Amino Acids

43.29

Weight (kDa)

5.85

Isoelectric Point (pI)

26.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	120 - 281	2.7e-32	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19750 FvH4_5g19760
malus_domestica	MD04G1058700.v1.1
prunus_persica	Prupe.5G062500_v2.0.a1 Prupe.5G062600_v2.0.a1 Prupe.5G062700_v2.0.a1
pyrus_communis	pycom04g05260
rosa_chinensis	RchiOBHm_Chr7g0203651 RchiOBHm_Chr7g0203681 RchiOBHm_Chr7g0204521 RchiOBHm_Chr7g0204541
rosa_laevigata	RLG00000003452 RLG00000003453 RLG00000003512
rosa_multiflora	Rmu_co8274427.1_g000001 Rmu_co8340383.1_g000001 Rmu_sc0005354.1_g000007 Rmu_ssc0000443.1_g000023 Rmu_ssc0000443.1_g000033
rosa_roxburghii	Rroxscaffold_3G00253010 Rroxscaffold_3G00253020 Rroxscaffold_3G00253540 Rroxscaffold_3G00253610 Rroxscaffold_6G00397050 Rroxscaffold_6G00397100
rosa_rugosa	Rorug07G0078000 Rorug07G0084900 Rorug07G0085000
rosa_samantha	Rh7AG207600 Rh7AG214200 Rh7AG214300 Rh7BG206900 Rh7BG211700 Rh7BG211800 Rh7CG219900 Rh7CG227300 Rh7DG214500 Rh7DG214700 Rh7DG221800 Rh7DG222000
rosa_wichuraiana	Rw7G018100 Rw7G018570 Rw7G018580 Rw7G018590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	893, 963
AciI	CCGC	6 cut(s)	39, 88, 108, 119, 308, 411
AclWI	GGATC	2 cut(s)	448, 452
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	289
AcuI	CTGAAG	1 cut(s)	1085
AcyI	GRCGYC	1 cut(s)	402
AfaI	GTAC	3 cut(s)	233, 570, 930
AfiI	CCNNNNNNNGG	1 cut(s)	743
AgsI	TTSAA	2 cut(s)	904, 1124
AhdI	GACNNNNNGTC	1 cut(s)	508
AjiI	CACGTC	1 cut(s)	793
AleI	CACNNNNGTG	1 cut(s)	108
AloI	GAACNNNNNNTCC	2 cut(s)	176, 208
AluBI	AGCT	4 cut(s)	425, 554, 703, 1092
AluI	AGCT	4 cut(s)	425, 554, 703, 1092
Alw21I	GWGCWC	2 cut(s)	141, 471
Alw26I	GTCTC	2 cut(s)	782, 890
Alw44I	GTGCAC	2 cut(s)	137, 467
AlwI	GGATC	2 cut(s)	448, 452
AlwNI	CAGNNNCTG	1 cut(s)	428
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	2 cut(s)	137, 467
ApeKI	GCWGC	2 cut(s)	554, 629
ApoI	RAATTY	1 cut(s)	289
Asp700I	GAANNNNTTC	1 cut(s)	786
AsuHPI	GGTGA	4 cut(s)	53, 122, 250, 758
BaeGI	GKGCMC	2 cut(s)	141, 471
BaeI	ACNNNNGTAYC	2 cut(s)	374, 407
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	2 cut(s)	141, 471
BbvI	GCAGC	2 cut(s)	541, 616
BccI	CCATC	4 cut(s)	196, 284, 1127, 1148
BceAI	ACGGC	2 cut(s)	110, 116
BcoDI	GTCTC	2 cut(s)	782, 890
BfaI	CTAG	3 cut(s)	551, 572, 743
BisI	GCNGC	2 cut(s)	555, 630
BlsI	GCNGC	2 cut(s)	556, 631
BmcAI	AGTACT	1 cut(s)	570
BmeRI	GACNNNNNGTC	1 cut(s)	508
BmgBI	CACGTC	1 cut(s)	793
BmiI	GGNNCC	3 cut(s)	124, 328, 373
BmrI	ACTGGG	1 cut(s)	370
BmuI	ACTGGG	1 cut(s)	370
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	977
BpuEI	CTTGAG	1 cut(s)	872
BsaAI	YACGTR	1 cut(s)	235
BsaHI	GRCGYC	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	782
BsaJI	CCNNGG	2 cut(s)	132, 472
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	743
Bse1I	ACTGG	3 cut(s)	376, 616, 1044
BseDI	CCNNGG	2 cut(s)	132, 472
BseGI	GGATG	3 cut(s)	592, 1135, 1156
BseLI	CCNNNNNNNGG	1 cut(s)	743
BseMII	CTCAG	1 cut(s)	1092
BseNI	ACTGG	3 cut(s)	376, 616, 1044
BseRI	GAGGAG	1 cut(s)	358
BseSI	GKGCMC	2 cut(s)	141, 471
BseXI	GCAGC	2 cut(s)	541, 616
BsgI	GTGCAG	1 cut(s)	540
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	141, 471
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	4 cut(s)	362, 496, 809, 997
BslI	CCNNNNNNNGG	1 cut(s)	743
BsmAI	GTCTC	2 cut(s)	782, 890
BsmFI	GGGAC	4 cut(s)	362, 496, 809, 997
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	782
Bsp1286I	GDGCHC	2 cut(s)	141, 471
Bsp143I	GATC	8 cut(s)	82, 440, 457, 541, 688, 952, 1030, 1057
BspACI	CCGC	6 cut(s)	39, 88, 108, 119, 308, 411
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	1093
BspLI	GGNNCC	3 cut(s)	124, 328, 373
BspPI	GGATC	2 cut(s)	448, 452
BspTNI	GGTCTC	1 cut(s)	782
BsrI	ACTGG	3 cut(s)	376, 616, 1044
BssECI	CCNNGG	2 cut(s)	132, 472
BssMI	GATC	8 cut(s)	82, 440, 457, 541, 688, 952, 1030, 1057
BssNI	GRCGYC	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	472
Bst4CI	ACNGT	3 cut(s)	607, 845, 884
BstACI	GRCGYC	1 cut(s)	402
BstBAI	YACGTR	1 cut(s)	235
BstC8I	GCNNGC	1 cut(s)	733
BstDEI	CTNAG	2 cut(s)	35, 1101
BstDSI	CCRYGG	1 cut(s)	132
BstEII	GGTNACC	1 cut(s)	218
BstF5I	GGATG	3 cut(s)	592, 1135, 1156
BstKTI	GATC	8 cut(s)	85, 443, 460, 544, 691, 955, 1033, 1060
BstMAI	GTCTC	2 cut(s)	782, 890
BstMBI	GATC	8 cut(s)	82, 440, 457, 541, 688, 952, 1030, 1057
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 635
BstPI	GGTNACC	1 cut(s)	218
BstSLI	GKGCMC	2 cut(s)	141, 471
BstV1I	GCAGC	2 cut(s)	541, 616
BstV2I	GAAGAC	1 cut(s)	51
BstXI	CCANNNNNNTGG	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	132
BtrI	CACGTC	1 cut(s)	793
BtsCI	GGATG	3 cut(s)	592, 1135, 1156
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	3 cut(s)	103, 609, 1037
Cac8I	GCNNGC	1 cut(s)	733
CaiI	CAGNNNCTG	1 cut(s)	428
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	3 cut(s)	232, 569, 929
CviAII	CATG	4 cut(s)	386, 622, 857, 971
CviQI	GTAC	3 cut(s)	232, 569, 929
DdeI	CTNAG	2 cut(s)	35, 1101
DpnI	GATC	8 cut(s)	84, 442, 459, 543, 690, 954, 1032, 1059
DpnII	GATC	8 cut(s)	82, 440, 457, 541, 688, 952, 1030, 1057
DraI	TTTAAA	2 cut(s)	645, 1012
DriI	GACNNNNNGTC	1 cut(s)	508
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	508
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	472
Eco31I	GGTCTC	1 cut(s)	782
Eco57I	CTGAAG	1 cut(s)	1085
Eco91I	GGTNACC	1 cut(s)	218
EcoO65I	GGTNACC	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	472
ErhI	CCWWGG	1 cut(s)	472
FaeI	CATG	4 cut(s)	389, 625, 860, 974
FaqI	GGGAC	4 cut(s)	362, 496, 809, 997
FatI	CATG	4 cut(s)	385, 621, 856, 970
FauI	CCCGC	1 cut(s)	112
FblI	GTMKAC	2 cut(s)	893, 963
Fnu4HI	GCNGC	2 cut(s)	555, 630
FokI	GGATG	3 cut(s)	599, 1142, 1163
Fsp4HI	GCNGC	2 cut(s)	555, 630
FspBI	CTAG	3 cut(s)	551, 572, 743
GluI	GCNGC	2 cut(s)	555, 630
GsuI	CTGGAG	1 cut(s)	977
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	6
HgaI	GACGC	1 cut(s)	410
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	4 cut(s)	389, 625, 860, 974
HincII	GTYRAC	1 cut(s)	894
HindII	GTYRAC	1 cut(s)	894
HinfI	GANTC	7 cut(s)	453, 706, 756, 917, 1024, 1120, 1160
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	4 cut(s)	53, 122, 250, 758
Hpy166II	GTNNAC	7 cut(s)	139, 400, 469, 894, 964, 1045, 1098
Hpy188I	TCNGA	4 cut(s)	430, 697, 922, 1065
Hpy188III	TCNNGA	6 cut(s)	280, 760, 779, 956, 1028, 1164
Hpy8I	GTNNAC	7 cut(s)	139, 400, 469, 894, 964, 1045, 1098
HpyAV	CCTTC	6 cut(s)	317, 757, 797, 898, 927, 1060
HpyCH4III	ACNGT	3 cut(s)	607, 845, 884
HpyCH4IV	ACGT	3 cut(s)	234, 351, 792
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 635
HpyF3I	CTNAG	2 cut(s)	35, 1101
HpySE526I	ACGT	3 cut(s)	234, 351, 792
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	4 cut(s)	389, 625, 860, 974
Kzo9I	GATC	8 cut(s)	82, 440, 457, 541, 688, 952, 1030, 1057
LmnI	GCTCC	2 cut(s)	122, 326
Lsp1109I	GCAGC	2 cut(s)	541, 616
MaeI	CTAG	3 cut(s)	551, 572, 743
MaeII	ACGT	3 cut(s)	234, 351, 792
MaeIII	GTNAC	6 cut(s)	218, 310, 607, 614, 712, 802
MalI	GATC	8 cut(s)	84, 442, 459, 543, 690, 954, 1032, 1059
MboI	GATC	8 cut(s)	82, 440, 457, 541, 688, 952, 1030, 1057
MboII	GAAGA	5 cut(s)	56, 166, 587, 1052, 1117
MfeI	CAATTG	1 cut(s)	720
MhlI	GDGCHC	2 cut(s)	141, 471
MluCI	AATT	4 cut(s)	289, 720, 830, 1013
MlyI	GAGTC	1 cut(s)	447
MmeI	TCCRAC	2 cut(s)	360, 841
MroXI	GAANNNNTTC	1 cut(s)	786
MseI	TTAA	4 cut(s)	179, 561, 644, 1011
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	1 cut(s)	6
MunI	CAATTG	1 cut(s)	720
MwoI	GCNNNNNNNGC	2 cut(s)	410, 635
NdeII	GATC	8 cut(s)	82, 440, 457, 541, 688, 952, 1030, 1057
NlaIII	CATG	4 cut(s)	389, 625, 860, 974
NlaIV	GGNNCC	3 cut(s)	124, 328, 373
NmuCI	GTSAC	4 cut(s)	607, 614, 712, 802
OliI	CACNNNNGTG	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	786
PfeI	GAWTC	5 cut(s)	706, 756, 917, 1024, 1120
PkrI	GCNGC	2 cut(s)	556, 631
PleI	GAGTC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	447
Ppu21I	YACGTR	1 cut(s)	235
PspEI	GGTNACC	1 cut(s)	218
PspN4I	GGNNCC	3 cut(s)	124, 328, 373
PstNI	CAGNNNCTG	1 cut(s)	428
RsaI	GTAC	3 cut(s)	233, 570, 930
RsaNI	GTAC	3 cut(s)	232, 569, 929
RseI	CAYNNNNRTG	1 cut(s)	108
SalI	GTCGAC	1 cut(s)	892
SaqAI	TTAA	4 cut(s)	179, 561, 644, 1011
SatI	GCNGC	2 cut(s)	555, 630
Sau3AI	GATC	8 cut(s)	82, 440, 457, 541, 688, 952, 1030, 1057
ScaI	AGTACT	1 cut(s)	570
SchI	GAGTC	1 cut(s)	447
SduI	GDGCHC	2 cut(s)	141, 471
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	887
SmoI	CTYRAG	1 cut(s)	887
Sse9I	AATT	4 cut(s)	289, 720, 830, 1013
SsiI	CCGC	6 cut(s)	39, 88, 108, 119, 308, 411
SspMI	CTAG	3 cut(s)	551, 572, 743
StyI	CCWWGG	1 cut(s)	472
TaaI	ACNGT	3 cut(s)	607, 845, 884
TaiI	ACGT	3 cut(s)	237, 354, 795
TaqI	TCGA	7 cut(s)	152, 172, 443, 456, 759, 780, 893
TasI	AATT	4 cut(s)	289, 720, 830, 1013
TatI	WGTACW	1 cut(s)	568
TfiI	GAWTC	5 cut(s)	706, 756, 917, 1024, 1120
Tru1I	TTAA	4 cut(s)	179, 561, 644, 1011
Tru9I	TTAA	4 cut(s)	179, 561, 644, 1011
TscAI	CASTG	3 cut(s)	110, 616, 1044
TseFI	GTSAC	4 cut(s)	607, 614, 712, 802
TseI	GCWGC	2 cut(s)	554, 629
Tsp45I	GTSAC	4 cut(s)	607, 614, 712, 802
TspDTI	ATGAA	3 cut(s)	336, 603, 845
TspGWI	ACGGA	1 cut(s)	465
TspRI	CASTG	3 cut(s)	110, 616, 1044
VneI	GTGCAC	2 cut(s)	137, 467
XapI	RAATTY	1 cut(s)	289
XmiI	GTMKAC	2 cut(s)	893, 963
XmnI	GAANNNNTTC	1 cut(s)	786
XspI	CTAG	3 cut(s)	551, 572, 743
ZrmI	AGTACT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.