Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002154

Physical Location & Seq

Genomic Coordinates Forward (+)

20693065 .. 20694919

Gene Structure 1855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG214700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGCCGGAGGTATAGCAACAAAGTGGAAGGTTCTAAGCGGCGAAGACGATTGGAAGGATCTACTAGACCCTCCCCACATTGATCTCCGCCACTATATCATTCACTGCGGTGAAAGGGCGGGAGCCGTAGCCGTGGTGCACGAACCAAAGTCGAAGAACTACCGACTTCCTCGATACTTAAAGGAACATTTGTTCTCAAAGATGGGTTTGCAGAGTGGTAACCCATACAAGTACGTGGTGAAAGAATACTTGTATGCAACAATCCCTCTGCTATCCATCGGGAAATCAAATTTTCTCGGTTTTGTTGCGGTTACAACAGATGAAGGAGCCAAAGTGTTGGGGAGGAGGGACGTTTTGATTTCTTGGAGAGGAACCCAGTTGGAACATGAGTATCTTGTGGACGCCGACACCGCTTTAGTTTCAGCTTCTGACATTCTGGGATCGAACAACGGACTCGATCCTTTGGTGCACCAAGGTTGGCTGTCCTACTACACTCATAAGGACATTCTGTCCCCACACAATAAACTACATAGTTGCAGAGATCAGGTTCTAGCTGCACTTAAATCAGTAATAGAAGAATACAAGGATGAAAAAATCAGCATTACTGTCACTGGTCACAGCATGGGTGCTGCAATAGCAACTTTAAACGCAACTGATATTGTCTGTAATGGACACAACAAACCCACAGATCAATCGGACAAGCTGATTCCTGTGACAGCAATTGTGTTTGCCAGCCCCCGACTAGGCGATGAGGGATTCGAGAAGGTGTTTTCTGGTCTCGAAAACCTTCACGTCTTGCGTGTCACTAATGACCAAGATATTGTCCCTAAATTACCATTGGACAGTAAATATGTTCATGTTGGAAAAGCATTGATAATAGACAGTCTCAAGTCGACCTACTTGAAGGTTATCCCTGAATCAGATAAAGTACGAAGGCTTAGCAGTTTGCACGATCTGGAGGTCTACTTGCATGGTGTTGCAGGGACACAGGGAACAGAAAGTAATGATTTTAAATTGGAAGTGAATCGTGATCTCGCACTGGTAAACAAATATATTGATCTTCTGAAGGACGAACATAAGGTAGTAGGTAGCTGGTGGACTGAGAAGAACAAGTCTATGAGTCAAATGGATGATGGCTCTTGGGTCTTGGATGATGGTGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

388

Amino Acids

43.22

Weight (kDa)

6.01

Isoelectric Point (pI)

27.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	120 - 281	2.9e-32	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19750 FvH4_5g19760
malus_domestica	MD04G1058700.v1.1
prunus_persica	Prupe.5G062500_v2.0.a1 Prupe.5G062600_v2.0.a1 Prupe.5G062700_v2.0.a1
pyrus_communis	pycom04g05260
rosa_chinensis	RchiOBHm_Chr7g0203651 RchiOBHm_Chr7g0203681 RchiOBHm_Chr7g0204521 RchiOBHm_Chr7g0204541
rosa_laevigata	RLG00000003452 RLG00000003453 RLG00000003512
rosa_multiflora	Rmu_co8274427.1_g000001 Rmu_co8340383.1_g000001 Rmu_sc0005354.1_g000007 Rmu_ssc0000443.1_g000023 Rmu_ssc0000443.1_g000033
rosa_roxburghii	Rroxscaffold_3G00253010 Rroxscaffold_3G00253020 Rroxscaffold_3G00253540 Rroxscaffold_3G00253610 Rroxscaffold_6G00397050 Rroxscaffold_6G00397100
rosa_rugosa	Rorug07G0078000 Rorug07G0084900 Rorug07G0085000
rosa_samantha	Rh7AG207600 Rh7AG214200 Rh7AG214300 Rh7BG206900 Rh7BG211700 Rh7BG211800 Rh7CG219900 Rh7CG227300 Rh7DG214500 Rh7DG214700 Rh7DG221800 Rh7DG222000
rosa_wichuraiana	Rw7G018100 Rw7G018570 Rw7G018580 Rw7G018590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	893, 963
AciI	CCGC	6 cut(s)	39, 88, 108, 119, 308, 411
AclWI	GGATC	3 cut(s)	66, 448, 452
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	289
AcuI	CTGAAG	1 cut(s)	1085
AcyI	GRCGYC	1 cut(s)	402
AfaI	GTAC	2 cut(s)	233, 930
AfiI	CCNNNNNNNGG	1 cut(s)	743
AgsI	TTSAA	1 cut(s)	904
AhdI	GACNNNNNGTC	1 cut(s)	508
AjiI	CACGTC	1 cut(s)	793
AleI	CACNNNNGTG	1 cut(s)	108
AloI	GAACNNNNNNTCC	2 cut(s)	176, 208
AluBI	AGCT	4 cut(s)	425, 554, 703, 1092
AluI	AGCT	4 cut(s)	425, 554, 703, 1092
Alw21I	GWGCWC	2 cut(s)	141, 471
Alw26I	GTCTC	2 cut(s)	782, 890
Alw44I	GTGCAC	2 cut(s)	137, 467
AlwI	GGATC	3 cut(s)	66, 448, 452
AlwNI	CAGNNNCTG	1 cut(s)	428
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	2 cut(s)	137, 467
ApeKI	GCWGC	2 cut(s)	554, 629
ApoI	RAATTY	1 cut(s)	289
Asp700I	GAANNNNTTC	1 cut(s)	786
AsuHPI	GGTGA	2 cut(s)	122, 250
BaeGI	GKGCMC	2 cut(s)	141, 471
BaeI	ACNNNNGTAYC	2 cut(s)	374, 407
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	2 cut(s)	141, 471
BbvI	GCAGC	2 cut(s)	541, 616
BccI	CCATC	4 cut(s)	196, 284, 1127, 1148
BceAI	ACGGC	2 cut(s)	110, 116
BcoDI	GTCTC	2 cut(s)	782, 890
BfaI	CTAG	3 cut(s)	65, 551, 743
BisI	GCNGC	3 cut(s)	40, 555, 630
BlpI	GCTNAGC	1 cut(s)	938
BlsI	GCNGC	3 cut(s)	41, 556, 631
BmeRI	GACNNNNNGTC	1 cut(s)	508
BmgBI	CACGTC	1 cut(s)	793
BmiI	GGNNCC	3 cut(s)	124, 328, 373
BmrI	ACTGGG	1 cut(s)	370
BmuI	ACTGGG	1 cut(s)	370
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	977
Bpu1102I	GCTNAGC	1 cut(s)	938
BpuEI	CTTGAG	1 cut(s)	872
BsaAI	YACGTR	1 cut(s)	235
BsaHI	GRCGYC	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	782
BsaJI	CCNNGG	2 cut(s)	132, 472
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	743
Bse1I	ACTGG	3 cut(s)	376, 616, 1044
BseDI	CCNNGG	2 cut(s)	132, 472
BseGI	GGATG	3 cut(s)	592, 1135, 1156
BseLI	CCNNNNNNNGG	1 cut(s)	743
BseMII	CTCAG	1 cut(s)	1092
BseNI	ACTGG	3 cut(s)	376, 616, 1044
BseRI	GAGGAG	1 cut(s)	358
BseSI	GKGCMC	2 cut(s)	141, 471
BseXI	GCAGC	2 cut(s)	541, 616
BsgI	GTGCAG	1 cut(s)	540
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	141, 471
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	4 cut(s)	362, 496, 809, 997
BslI	CCNNNNNNNGG	1 cut(s)	743
BsmAI	GTCTC	2 cut(s)	782, 890
BsmFI	GGGAC	4 cut(s)	362, 496, 809, 997
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	782
Bsp1286I	GDGCHC	2 cut(s)	141, 471
Bsp143I	GATC	9 cut(s)	58, 82, 440, 457, 541, 688, 952, 1030, 1057
Bsp1720I	GCTNAGC	1 cut(s)	938
BspACI	CCGC	6 cut(s)	39, 88, 108, 119, 308, 411
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	1093
BspLI	GGNNCC	3 cut(s)	124, 328, 373
BspPI	GGATC	3 cut(s)	66, 448, 452
BspTNI	GGTCTC	1 cut(s)	782
BsrI	ACTGG	3 cut(s)	376, 616, 1044
BssECI	CCNNGG	2 cut(s)	132, 472
BssMI	GATC	9 cut(s)	58, 82, 440, 457, 541, 688, 952, 1030, 1057
BssNI	GRCGYC	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	472
Bst4CI	ACNGT	3 cut(s)	607, 845, 884
BstACI	GRCGYC	1 cut(s)	402
BstBAI	YACGTR	1 cut(s)	235
BstC8I	GCNNGC	1 cut(s)	733
BstDEI	CTNAG	3 cut(s)	35, 938, 1101
BstDSI	CCRYGG	1 cut(s)	132
BstEII	GGTNACC	1 cut(s)	218
BstF5I	GGATG	3 cut(s)	592, 1135, 1156
BstKTI	GATC	9 cut(s)	61, 85, 443, 460, 544, 691, 955, 1033, 1060
BstMAI	GTCTC	2 cut(s)	782, 890
BstMBI	GATC	9 cut(s)	58, 82, 440, 457, 541, 688, 952, 1030, 1057
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 635
BstPI	GGTNACC	1 cut(s)	218
BstSLI	GKGCMC	2 cut(s)	141, 471
BstV1I	GCAGC	2 cut(s)	541, 616
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	132
BtgZI	GCGATG	1 cut(s)	762
BtrI	CACGTC	1 cut(s)	793
BtsCI	GGATG	3 cut(s)	592, 1135, 1156
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	3 cut(s)	103, 609, 1037
Cac8I	GCNNGC	1 cut(s)	733
CaiI	CAGNNNCTG	1 cut(s)	428
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	2 cut(s)	232, 929
CviAII	CATG	4 cut(s)	386, 622, 857, 971
CviQI	GTAC	2 cut(s)	232, 929
DdeI	CTNAG	3 cut(s)	35, 938, 1101
DpnI	GATC	9 cut(s)	60, 84, 442, 459, 543, 690, 954, 1032, 1059
DpnII	GATC	9 cut(s)	58, 82, 440, 457, 541, 688, 952, 1030, 1057
DraI	TTTAAA	2 cut(s)	645, 1012
DriI	GACNNNNNGTC	1 cut(s)	508
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	508
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	472
Eco31I	GGTCTC	1 cut(s)	782
Eco57I	CTGAAG	1 cut(s)	1085
Eco91I	GGTNACC	1 cut(s)	218
EcoO65I	GGTNACC	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	472
ErhI	CCWWGG	1 cut(s)	472
FaeI	CATG	4 cut(s)	389, 625, 860, 974
FaqI	GGGAC	4 cut(s)	362, 496, 809, 997
FatI	CATG	4 cut(s)	385, 621, 856, 970
FauI	CCCGC	1 cut(s)	112
FblI	GTMKAC	2 cut(s)	893, 963
Fnu4HI	GCNGC	3 cut(s)	40, 555, 630
FokI	GGATG	3 cut(s)	599, 1142, 1163
Fsp4HI	GCNGC	3 cut(s)	40, 555, 630
FspBI	CTAG	3 cut(s)	65, 551, 743
GluI	GCNGC	3 cut(s)	40, 555, 630
GsuI	CTGGAG	1 cut(s)	977
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	6
HgaI	GACGC	1 cut(s)	410
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	4 cut(s)	389, 625, 860, 974
HincII	GTYRAC	1 cut(s)	894
HindII	GTYRAC	1 cut(s)	894
HinfI	GANTC	7 cut(s)	453, 706, 756, 917, 1024, 1120, 1160
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	2 cut(s)	122, 250
Hpy166II	GTNNAC	7 cut(s)	139, 400, 469, 894, 964, 1045, 1098
Hpy188I	TCNGA	4 cut(s)	430, 697, 922, 1065
Hpy188III	TCNNGA	6 cut(s)	280, 760, 779, 956, 1028, 1164
Hpy8I	GTNNAC	7 cut(s)	139, 400, 469, 894, 964, 1045, 1098
HpyAV	CCTTC	8 cut(s)	22, 49, 317, 757, 797, 898, 927, 1060
HpyCH4III	ACNGT	3 cut(s)	607, 845, 884
HpyCH4IV	ACGT	3 cut(s)	234, 351, 792
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 635
HpyF3I	CTNAG	3 cut(s)	35, 938, 1101
HpySE526I	ACGT	3 cut(s)	234, 351, 792
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	4 cut(s)	389, 625, 860, 974
Kzo9I	GATC	9 cut(s)	58, 82, 440, 457, 541, 688, 952, 1030, 1057
LmnI	GCTCC	2 cut(s)	122, 326
Lsp1109I	GCAGC	2 cut(s)	541, 616
MaeI	CTAG	3 cut(s)	65, 551, 743
MaeII	ACGT	3 cut(s)	234, 351, 792
MaeIII	GTNAC	6 cut(s)	218, 310, 607, 614, 712, 802
MalI	GATC	9 cut(s)	60, 84, 442, 459, 543, 690, 954, 1032, 1059
MboI	GATC	9 cut(s)	58, 82, 440, 457, 541, 688, 952, 1030, 1057
MboII	GAAGA	5 cut(s)	56, 166, 587, 1052, 1117
MfeI	CAATTG	1 cut(s)	720
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	2 cut(s)	141, 471
MluCI	AATT	4 cut(s)	289, 720, 830, 1013
MlyI	GAGTC	2 cut(s)	447, 1129
MmeI	TCCRAC	2 cut(s)	360, 841
MnlI	CCTC	8 cut(s)	81, 180, 276, 336, 339, 362, 745, 952
MroXI	GAANNNNTTC	1 cut(s)	786
MseI	TTAA	4 cut(s)	179, 561, 644, 1011
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	1 cut(s)	6
MunI	CAATTG	1 cut(s)	720
MwoI	GCNNNNNNNGC	2 cut(s)	410, 635
NdeII	GATC	9 cut(s)	58, 82, 440, 457, 541, 688, 952, 1030, 1057
NlaIII	CATG	4 cut(s)	389, 625, 860, 974
NlaIV	GGNNCC	3 cut(s)	124, 328, 373
NmuCI	GTSAC	4 cut(s)	607, 614, 712, 802
OliI	CACNNNNGTG	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	786
PfeI	GAWTC	4 cut(s)	706, 756, 917, 1024
PkrI	GCNGC	3 cut(s)	41, 556, 631
PleI	GAGTC	2 cut(s)	447, 1128
PpsI	GAGTC	2 cut(s)	447, 1128
Ppu21I	YACGTR	1 cut(s)	235
PspEI	GGTNACC	1 cut(s)	218
PspN4I	GGNNCC	3 cut(s)	124, 328, 373
PstNI	CAGNNNCTG	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	2 cut(s)	233, 930
RsaNI	GTAC	2 cut(s)	232, 929
RseI	CAYNNNNRTG	1 cut(s)	108
SalI	GTCGAC	1 cut(s)	892
SaqAI	TTAA	4 cut(s)	179, 561, 644, 1011
SatI	GCNGC	3 cut(s)	40, 555, 630
Sau3AI	GATC	9 cut(s)	58, 82, 440, 457, 541, 688, 952, 1030, 1057
SchI	GAGTC	2 cut(s)	447, 1129
SduI	GDGCHC	2 cut(s)	141, 471
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	887
SmoI	CTYRAG	1 cut(s)	887
Sse9I	AATT	4 cut(s)	289, 720, 830, 1013
SsiI	CCGC	6 cut(s)	39, 88, 108, 119, 308, 411
SspMI	CTAG	3 cut(s)	65, 551, 743
StyI	CCWWGG	1 cut(s)	472
TaaI	ACNGT	3 cut(s)	607, 845, 884
TaiI	ACGT	3 cut(s)	237, 354, 795
TaqI	TCGA	7 cut(s)	152, 172, 443, 456, 759, 780, 893
TasI	AATT	4 cut(s)	289, 720, 830, 1013
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	4 cut(s)	706, 756, 917, 1024
Tru1I	TTAA	4 cut(s)	179, 561, 644, 1011
Tru9I	TTAA	4 cut(s)	179, 561, 644, 1011
TscAI	CASTG	3 cut(s)	110, 616, 1044
TseFI	GTSAC	4 cut(s)	607, 614, 712, 802
TseI	GCWGC	2 cut(s)	554, 629
Tsp45I	GTSAC	4 cut(s)	607, 614, 712, 802
TspDTI	ATGAA	3 cut(s)	336, 603, 845
TspGWI	ACGGA	1 cut(s)	465
TspRI	CASTG	3 cut(s)	110, 616, 1044
VneI	GTGCAC	2 cut(s)	137, 467
XapI	RAATTY	1 cut(s)	289
XmiI	GTMKAC	2 cut(s)	893, 963
XmnI	GAANNNNTTC	1 cut(s)	786
XspI	CTAG	3 cut(s)	65, 551, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.