Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002154

Physical Location & Seq

Genomic Coordinates Forward (+)

47091956 .. 47093407

Gene Structure 1452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00253010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGCAGGGCGCTATAAATACAAGAGCTGGCGATGGCAGAAGAAACTCAGAAGAAGAACAAGAAACTCAGTCCTTTCAAGTTTTGTTTACTCGAGCACGAAAACTTACGGCGATGGCTAGCTTTGCAGAAAACTGGAGGGATCTGAGCGGCAAGAACGACTGGGAGGGTCTACTAGACCCTCTCGACATCAATCTCCGCCGCTATATCATTCACTATGGTGAAAGGGCTGGAGCGGCGGTGTTCGTGGTGAAGGAGCCAAAGTCGAAGAACTACAGACTTCCGCAATACGCAAAAGGACATTTGTTCGCAAGGGTGGGTTTGGAGAGTGGTAATCCATACAAGTACATGGTGAAAAAATATTTTTATGCAACTCATCTGGAACTTTCGCCCAAGAAATCAAACTTCCTGGGTTTTGTCGCGGTGACAACTGATGAAGGAAACAAAGTGCTAGGCCGGAGGGATGTCTTGATTTCATGGAGAGGAACCACATTGGTACATGAGTGGCTTGTTGACGCGAACATCAATTTGGTCTCAGCTTCTCACATTCTGGGAGAGGAGAATGATCCTAAGGTGCACCAGGGTTGGCTTTCCTATTACACTGATATCGACCCTGAGTCCTCACACAATCAACTTACTAGTTCCAGAGATCAGGCTCTAGCTGCACTTAAAGAAGTACTTGATGAATACAAGGGTGAAGAAATCAGCATTACTGTCACTGGTCACAGCATGGGTGCTGCACTCGCAATTCTAAATGCGTCTGATATTGTTCATAACGGATACAATAAAATGACAGATCAACCAAATAAGGTCATTCCTGTCACAGCTATTGTGTTTGCCTGCCCTCGTCTTGGAAACCAGGGTTTTAAAATTGTACTTTCTGGTCTTGAAAATCTTCACGTCTTGCGTATCACAAATGACCAAGATATCGTCCCTAAAGCACCAGAATCGGTGGATTATGTTCATGTAGGAAAAGAGTTGAGAATAGACACTCTCAAGTCGCCGTTCTTGAAAGTTATTCCTGATACTAATGTCACAGAAAAACTTATCCATTTGCACGATCTGGAAGCTTACTTGCATGGCGTTGCAGGGACACAGGGGATCAAAAGTTTTGATTTCAAATTGGAAGTTGATCGTGATCTGGCACTGGTAAACAAGTTTATTGATGGCGTGAAGGATGAACATAATATAGTTGCTCAGTGGTGGACTGAGAAGAATAAGTCTATGATCCAAATGGATGATGGCTCTTGGGTGTTGGATGATCACGAGGAAGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

425

Amino Acids

47.94

Weight (kDa)

5.69

Isoelectric Point (pI)

33.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	157 - 315	1.3e-32	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19750 FvH4_5g19760
malus_domestica	MD04G1058700.v1.1
prunus_persica	Prupe.5G062500_v2.0.a1 Prupe.5G062600_v2.0.a1 Prupe.5G062700_v2.0.a1
pyrus_communis	pycom04g05260
rosa_chinensis	RchiOBHm_Chr7g0203651 RchiOBHm_Chr7g0203681 RchiOBHm_Chr7g0204521 RchiOBHm_Chr7g0204541
rosa_laevigata	RLG00000003452 RLG00000003453 RLG00000003512
rosa_multiflora	Rmu_co8274427.1_g000001 Rmu_co8340383.1_g000001 Rmu_sc0005354.1_g000007 Rmu_ssc0000443.1_g000023 Rmu_ssc0000443.1_g000033
rosa_roxburghii	Rroxscaffold_3G00253010 Rroxscaffold_3G00253020 Rroxscaffold_3G00253540 Rroxscaffold_3G00253610 Rroxscaffold_6G00397050 Rroxscaffold_6G00397100
rosa_rugosa	Rorug07G0078000 Rorug07G0084900 Rorug07G0085000
rosa_samantha	Rh7AG207600 Rh7AG214200 Rh7AG214300 Rh7BG206900 Rh7BG211700 Rh7BG211800 Rh7CG219900 Rh7CG227300 Rh7DG214500 Rh7DG214700 Rh7DG221800 Rh7DG222000
rosa_wichuraiana	Rw7G018100 Rw7G018570 Rw7G018580 Rw7G018590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	147, 233
AccI	GTMKAC	1 cut(s)	169
AccII	CGCG	2 cut(s)	419, 515
AciI	CCGC	7 cut(s)	147, 196, 199, 233, 236, 281, 419
AclWI	GGATC	4 cut(s)	147, 557, 1106, 1219
AfaI	GTAC	4 cut(s)	344, 495, 675, 873
AfiI	CCNNNNNNNGG	1 cut(s)	848
AgsI	TTSAA	4 cut(s)	77, 887, 1009, 1117
AhdI	GACNNNNNGTC	1 cut(s)	613
AhlI	ACTAGT	1 cut(s)	635
AjiI	CACGTC	1 cut(s)	898
AjnI	CCWGG	3 cut(s)	405, 576, 855
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
AleI	CACNNNNGTG	1 cut(s)	216
AluBI	AGCT	6 cut(s)	26, 120, 536, 659, 824, 1067
AluI	AGCT	6 cut(s)	26, 120, 536, 659, 824, 1067
Alw21I	GWGCWC	2 cut(s)	97, 576
Alw26I	GTCTC	1 cut(s)	535
Alw44I	GTGCAC	1 cut(s)	572
AlwI	GGATC	4 cut(s)	147, 557, 1106, 1219
Ama87I	CYCGRG	1 cut(s)	90
AoxI	GGCC	1 cut(s)	451
ApaLI	GTGCAC	1 cut(s)	572
ApeKI	GCWGC	2 cut(s)	659, 734
Asp700I	GAANNNNTTC	1 cut(s)	891
AspLEI	GCGC	1 cut(s)	11
AsuHPI	GGTGA	5 cut(s)	230, 259, 361, 433, 704
AsuNHI	GCTAGC	1 cut(s)	116
AvaI	CYCGRG	1 cut(s)	90
AxyI	CCTNAGG	1 cut(s)	567
BaeGI	GKGCMC	1 cut(s)	576
BaeI	ACNNNNGTAYC	4 cut(s)	485, 518, 1014, 1047
BauI	CACGAG	1 cut(s)	1262
Bbv12I	GWGCWC	2 cut(s)	97, 576
BbvI	GCAGC	2 cut(s)	646, 721
BccI	CCATC	4 cut(s)	26, 106, 1157, 1232
BceAI	ACGGC	2 cut(s)	123, 985
BcgI	CGANNNNNNTGC	2 cut(s)	927, 961
BciT130I	CCWGG	3 cut(s)	407, 578, 857
BciVI	GTATCC	1 cut(s)	770
BclI	TGATCA	1 cut(s)	1258
BcoDI	GTCTC	1 cut(s)	535
BcuI	ACTAGT	1 cut(s)	635
BfaI	CTAG	5 cut(s)	117, 173, 449, 636, 656
BfmI	CTRYAG	1 cut(s)	271
BfoI	RGCGCY	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	770
BisI	GCNGC	5 cut(s)	148, 199, 234, 660, 735
BlsI	GCNGC	5 cut(s)	149, 200, 235, 661, 736
BmcAI	AGTACT	1 cut(s)	675
Bme1390I	CCNGG	3 cut(s)	407, 578, 857
BmeRI	GACNNNNNGTC	1 cut(s)	613
BmeT110I	CYCGRG	1 cut(s)	90
BmgBI	CACGTC	1 cut(s)	898
BmiI	GGNNCC	2 cut(s)	255, 484
BmrFI	CCNGG	3 cut(s)	407, 578, 857
BmrI	ACTGGG	1 cut(s)	169
BmtI	GCTAGC	1 cut(s)	120
BmuI	ACTGGG	1 cut(s)	169
BpmI	CTGGAG	2 cut(s)	154, 249
BpuEI	CTTGAG	1 cut(s)	977
BsaBI	GATNNNNATC	1 cut(s)	1134
BsaI	GGTCTC	1 cut(s)	535
BsaJI	CCNNGG	3 cut(s)	406, 577, 856
BsaXI	ACNNNNNCTCC	4 cut(s)	222, 245, 252, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	848
Bse1I	ACTGG	4 cut(s)	137, 164, 721, 1149
Bse21I	CCTNAGG	1 cut(s)	567
Bse8I	GATNNNNATC	1 cut(s)	1134
BseBI	CCWGG	3 cut(s)	407, 578, 857
BseDI	CCNNGG	3 cut(s)	406, 577, 856
BseGI	GGATG	4 cut(s)	466, 1180, 1240, 1261
BseJI	GATNNNNATC	1 cut(s)	1134
BseLI	CCNNNNNNNGG	1 cut(s)	848
BseMII	CTCAG	7 cut(s)	60, 80, 134, 546, 603, 1197, 1208
BseNI	ACTGG	4 cut(s)	137, 164, 721, 1149
BseRI	GAGGAG	1 cut(s)	569
BseSI	GKGCMC	1 cut(s)	576
BseXI	GCAGC	2 cut(s)	646, 721
BsgI	GTGCAG	2 cut(s)	645, 720
Bsh1236I	CGCG	2 cut(s)	419, 515
BshFI	GGCC	1 cut(s)	453
BsiHKAI	GWGCWC	2 cut(s)	97, 576
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	454
BslFI	GGGAC	2 cut(s)	914, 1102
BslI	CCNNNNNNNGG	1 cut(s)	848
BsmAI	GTCTC	1 cut(s)	535
BsmFI	GGGAC	2 cut(s)	914, 1102
BsnI	GGCC	1 cut(s)	453
Bso31I	GGTCTC	1 cut(s)	535
BsoBI	CYCGRG	1 cut(s)	90
Bsp1286I	GDGCHC	2 cut(s)	97, 576
BspACI	CCGC	7 cut(s)	147, 196, 199, 233, 236, 281, 419
BspANI	GGCC	1 cut(s)	453
BspCNI	CTCAG	7 cut(s)	59, 79, 135, 545, 604, 1198, 1207
BspFNI	CGCG	2 cut(s)	419, 515
BspLI	GGNNCC	2 cut(s)	255, 484
BspOI	GCTAGC	1 cut(s)	120
BspPI	GGATC	4 cut(s)	147, 557, 1106, 1219
BspTNI	GGTCTC	1 cut(s)	535
BsrBI	CCGCTC	2 cut(s)	147, 233
BsrI	ACTGG	4 cut(s)	137, 164, 721, 1149
BssECI	CCNNGG	3 cut(s)	406, 577, 856
BssSI	CACGAG	1 cut(s)	1262
Bst2BI	CACGAG	1 cut(s)	1262
Bst2UI	CCWGG	3 cut(s)	407, 578, 857
Bst4CI	ACNGT	1 cut(s)	712
BstC8I	GCNNGC	3 cut(s)	28, 118, 838
BstDEI	CTNAG	8 cut(s)	46, 66, 143, 532, 567, 612, 1194, 1206
BstF5I	GGATG	4 cut(s)	466, 1180, 1240, 1261
BstFNI	CGCG	2 cut(s)	419, 515
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstMAI	GTCTC	1 cut(s)	535
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 233, 659, 740
BstNI	CCWGG	3 cut(s)	407, 578, 857
BstSCI	CCNGG	3 cut(s)	405, 576, 855
BstSFI	CTRYAG	1 cut(s)	271
BstSLI	GKGCMC	1 cut(s)	576
BstUI	CGCG	2 cut(s)	419, 515
BstV1I	GCAGC	2 cut(s)	646, 721
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
Bsu36I	CCTNAGG	1 cut(s)	567
BsuI	GTATCC	1 cut(s)	770
BsuRI	GGCC	1 cut(s)	453
BtgZI	GCGATG	2 cut(s)	45, 125
BtrI	CACGTC	1 cut(s)	898
BtsCI	GGATG	4 cut(s)	466, 1180, 1240, 1261
BtsIMutI	CAGTG	4 cut(s)	597, 714, 1142, 1202
Cac8I	GCNNGC	3 cut(s)	28, 118, 838
CfoI	GCGC	1 cut(s)	11
CseI	GACGC	2 cut(s)	521, 744
Csp6I	GTAC	4 cut(s)	343, 494, 674, 872
CviAII	CATG	6 cut(s)	346, 474, 497, 727, 962, 1076
CviQI	GTAC	4 cut(s)	343, 494, 674, 872
DdeI	CTNAG	8 cut(s)	46, 66, 143, 532, 567, 612, 1194, 1206
DraI	TTTAAA	1 cut(s)	865
DriI	GACNNNNNGTC	1 cut(s)	613
Eam1105I	GACNNNNNGTC	1 cut(s)	613
EciI	GGCGGA	1 cut(s)	185
Eco31I	GGTCTC	1 cut(s)	535
Eco32I	GATATC	2 cut(s)	604, 925
Eco81I	CCTNAGG	1 cut(s)	567
Eco88I	CYCGRG	1 cut(s)	90
EcoRII	CCWGG	3 cut(s)	405, 576, 855
EcoRV	GATATC	2 cut(s)	604, 925
FaeI	CATG	6 cut(s)	349, 477, 500, 730, 965, 1079
FalI	AAGNNNNNCTT	2 cut(s)	660, 692
FaqI	GGGAC	2 cut(s)	914, 1102
FatI	CATG	6 cut(s)	345, 473, 496, 726, 961, 1075
FbaI	TGATCA	1 cut(s)	1258
FblI	GTMKAC	1 cut(s)	169
Fnu4HI	GCNGC	5 cut(s)	148, 199, 234, 660, 735
FokI	GGATG	4 cut(s)	473, 1187, 1247, 1268
Fsp4HI	GCNGC	5 cut(s)	148, 199, 234, 660, 735
FspBI	CTAG	5 cut(s)	117, 173, 449, 636, 656
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	5 cut(s)	148, 199, 234, 660, 735
GsuI	CTGGAG	2 cut(s)	154, 249
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	453
HapII	CCGG	1 cut(s)	454
HgaI	GACGC	2 cut(s)	521, 744
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	6 cut(s)	349, 477, 500, 730, 965, 1079
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HindIII	AAGCTT	1 cut(s)	1065
HinfI	GANTC	2 cut(s)	614, 944
HpaII	CCGG	1 cut(s)	454
HphI	GGTGA	5 cut(s)	230, 259, 361, 433, 704
Hpy166II	GTNNAC	6 cut(s)	87, 170, 511, 574, 1150, 1203
Hpy188I	TCNGA	3 cut(s)	49, 144, 760
Hpy8I	GTNNAC	6 cut(s)	87, 170, 511, 574, 1150, 1203
HpyAV	CCTTC	3 cut(s)	244, 428, 1165
HpyCH4III	ACNGT	1 cut(s)	712
HpyCH4IV	ACGT	1 cut(s)	897
HpyCH4V	TGCA	9 cut(s)	4, 125, 368, 574, 662, 737, 1054, 1075, 1085
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 233, 659, 740
HpyF3I	CTNAG	8 cut(s)	46, 66, 143, 532, 567, 612, 1194, 1206
HpySE526I	ACGT	1 cut(s)	897
Hsp92II	CATG	6 cut(s)	349, 477, 500, 730, 965, 1079
HspAI	GCGC	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	1258
LmnI	GCTCC	2 cut(s)	230, 253
Lsp1109I	GCAGC	2 cut(s)	646, 721
MaeI	CTAG	5 cut(s)	117, 173, 449, 636, 656
MaeII	ACGT	1 cut(s)	897
MaeIII	GTNAC	5 cut(s)	421, 712, 719, 817, 1030
MbiI	CCGCTC	2 cut(s)	147, 233
MboII	GAAGA	7 cut(s)	51, 62, 65, 277, 707, 884, 1222
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	2 cut(s)	97, 576
MluCI	AATT	4 cut(s)	523, 744, 867, 1118
MlyI	GAGTC	1 cut(s)	623
MmeI	TCCRAC	1 cut(s)	1233
MnlI	CCTC	9 cut(s)	129, 157, 189, 450, 473, 547, 628, 852, 1258
MroXI	GAANNNNTTC	1 cut(s)	891
MseI	TTAA	2 cut(s)	666, 864
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	1 cut(s)	454
MspR9I	CCNGG	3 cut(s)	407, 578, 857
MvaI	CCWGG	3 cut(s)	407, 578, 857
MvnI	CGCG	2 cut(s)	419, 515
MwoI	GCNNNNNNNGC	4 cut(s)	122, 233, 659, 740
NheI	GCTAGC	1 cut(s)	116
NlaIII	CATG	6 cut(s)	349, 477, 500, 730, 965, 1079
NlaIV	GGNNCC	2 cut(s)	255, 484
NmuCI	GTSAC	5 cut(s)	421, 712, 719, 817, 1030
OliI	CACNNNNGTG	1 cut(s)	216
PaeR7I	CTCGAG	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	891
PfeI	GAWTC	1 cut(s)	944
PkrI	GCNGC	5 cut(s)	149, 200, 235, 661, 736
PleI	GAGTC	1 cut(s)	622
PpsI	GAGTC	1 cut(s)	622
Psp6I	CCWGG	3 cut(s)	405, 576, 855
PspGI	CCWGG	3 cut(s)	405, 576, 855
PspN4I	GGNNCC	2 cut(s)	255, 484
PspXI	VCTCGAGB	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	139
RsaI	GTAC	4 cut(s)	344, 495, 675, 873
RsaNI	GTAC	4 cut(s)	343, 494, 674, 872
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	666, 864
SatI	GCNGC	5 cut(s)	148, 199, 234, 660, 735
ScaI	AGTACT	1 cut(s)	675
SchI	GAGTC	1 cut(s)	623
ScrFI	CCNGG	3 cut(s)	407, 578, 857
SduI	GDGCHC	2 cut(s)	97, 576
SetI	ASST	9 cut(s)	28, 122, 538, 573, 661, 810, 826, 900, 1069
SfcI	CTRYAG	1 cut(s)	271
Sfr274I	CTCGAG	1 cut(s)	90
SlaI	CTCGAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	2 cut(s)	90, 992
SmoI	CTYRAG	2 cut(s)	90, 992
SpeI	ACTAGT	1 cut(s)	635
Sse9I	AATT	4 cut(s)	523, 744, 867, 1118
SsiI	CCGC	7 cut(s)	147, 196, 199, 233, 236, 281, 419
SspI	AATATT	1 cut(s)	359
SspMI	CTAG	5 cut(s)	117, 173, 449, 636, 656
StyD4I	CCNGG	3 cut(s)	405, 576, 855
TaaI	ACNGT	1 cut(s)	712
TaiI	ACGT	1 cut(s)	900
TaqI	TCGA	4 cut(s)	91, 183, 263, 606
TasI	AATT	4 cut(s)	523, 744, 867, 1118
TatI	WGTACW	3 cut(s)	342, 673, 871
TauI	GCSGC	3 cut(s)	150, 201, 236
TfiI	GAWTC	1 cut(s)	944
Tru1I	TTAA	2 cut(s)	666, 864
Tru9I	TTAA	2 cut(s)	666, 864
TscAI	CASTG	4 cut(s)	604, 721, 1149, 1202
TseFI	GTSAC	5 cut(s)	421, 712, 719, 817, 1030
TseI	GCWGC	2 cut(s)	659, 734
Tsp45I	GTSAC	5 cut(s)	421, 712, 719, 817, 1030
TspDTI	ATGAA	6 cut(s)	447, 462, 696, 758, 950, 1191
TspGWI	ACGGA	1 cut(s)	789
TspRI	CASTG	4 cut(s)	604, 721, 1149, 1202
VneI	GTGCAC	1 cut(s)	572
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1235
XhoI	CTCGAG	1 cut(s)	90
XmiI	GTMKAC	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	891
XspI	CTAG	5 cut(s)	117, 173, 449, 636, 656
ZrmI	AGTACT	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.