RchiOBHm_Chr7g0204541

phospholipase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
22231020 .. 22232468
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18308

Sequence Viewer

Length: 1278 bp
ATGCAGGGCACTATAAATACAAGAGCCGGCGATGGCAGAAGAAACTCAGAAGAAGAACAAGAAACTCAGTCCTTTCTAGTTTTGTTTACTCGAGCACGAAAACTTACGGCGATGGCTAGCTTTGCAGAAAACTGGAGGGATCTGAGCGGCAAGAACGACTGGGAGGGTCTACTAGACCCTCTCGACAGCAATCTCCGCCGCGCTATCATTCATTATGGTGAAAGGGCTGGAGCGGCGGTATTCGTGGTGAAGGAGCCAAAGTCGAAGAACTACAGACTTCCGCAATACGCAAAAGGACATTTGTTCGCAAAGGTGGGTTTGGAGAGTGGTAATCCATACAAATACATGGTGAAAAAATATTTTTATGCAACTCATCTGAAACTTTCGCCCAAGAAATCAAACTTCCTGGGTTTTGTTGCGGTGACAACTGATGAAGGAACCAAAGTGCTAGGCCGGAGGGATGTCTTGATTTCATGGAGAGGAACCACATTGGTACATGAGTGGCTTGTTGACGCGAACATCAATTTGGTCTCAGCTTCTCACATTCTCGGAGTGGAGAATGATCCTAAGGTGCACCAGGGTTGGCTTTCCTATTACACTGATATGGACCCTGAGTCCTCACACAATCAACTTACTAGTTCCAGAGATCAGGCTCTAGCTGCACTTAAAGAAGTACTTGATGAATACAAGGGTGAAGAAATCAGCATTACTGTCACTGGTCACAGCATGGGTGCTGCACTCGCAATTCTAAATGCGTCTGATATTGTTCATAACGGATACAATAAAATGACAGATCAACCAAATAAGGTCATTCCTGTCACAGCTATTGTGTTTGCCTGCCCTCGTCTTGGAAACCAGGGTTTTAAAATTGTACTTTCTGGTCTTGAAAATCTTCACGTCTTGCGTGTCACAAATGACCAAGATATCGTCCCTAAAGCACTAGAATCGGTGGATTATGTTCATGTCGGAAAAGAGTTGAGAATCGACACTCTCAAGTCGCCGTTCTTGAAAGTTATTCCTGATACTAATGTCACAGAAAAACTTATCCATTTGCACGATCTGGAGGCTTACTTGCATGGAGTTGCAGGGACACAGGGGATCAAAAGTTCTGATTTCAAATTGGAAGTTGATCGTGATCTGGCACTGGTAAACAAGTTTATTGATGGCGTGAAGGATGAACATAATATAGTTGCTCAGTGGTGGACTGAGAAGAATAAGTCTATGATCCAAATGGATGATGGCTCTTGGGTGTTGGATGATCACGAGGAAGATGAATAG

Protein Analysis

425

Amino Acids

47.73

Weight (kDa)

5.91

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 157 - 313 1.2e-31 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 147, 233
AccI GTMKAC 1 cut(s) 169
AccII CGCG 2 cut(s) 201, 515
AciI CCGC 7 cut(s) 147, 196, 199, 233, 236, 281, 419
AclWI GGATC 4 cut(s) 147, 557, 1106, 1219
AfaI GTAC 3 cut(s) 495, 675, 873
AfiI CCNNNNNNNGG 1 cut(s) 848
AgsI TTSAA 3 cut(s) 887, 1009, 1117
AhdI GACNNNNNGTC 1 cut(s) 613
AhlI ACTAGT 1 cut(s) 635
AjiI CACGTC 1 cut(s) 898
AjnI CCWGG 3 cut(s) 405, 576, 855
AjuI GAANNNNNNNTTGG 2 cut(s) 509, 541
AloI GAACNNNNNNTCC 2 cut(s) 1090, 1122
AluBI AGCT 4 cut(s) 120, 536, 659, 824
AluI AGCT 4 cut(s) 120, 536, 659, 824
Alw21I GWGCWC 2 cut(s) 97, 576
Alw26I GTCTC 1 cut(s) 535
Alw44I GTGCAC 1 cut(s) 572
AlwI GGATC 4 cut(s) 147, 557, 1106, 1219
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 1 cut(s) 451
ApaLI GTGCAC 1 cut(s) 572
ApeKI GCWGC 2 cut(s) 659, 734
Asp700I GAANNNNTTC 1 cut(s) 891
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 607
AsuHPI GGTGA 5 cut(s) 230, 259, 361, 433, 704
AsuNHI GCTAGC 1 cut(s) 116
AvaI CYCGRG 1 cut(s) 90
AvaII GGWCC 1 cut(s) 607
AxyI CCTNAGG 1 cut(s) 567
BaeGI GKGCMC 2 cut(s) 11, 576
BaeI ACNNNNGTAYC 4 cut(s) 485, 518, 1014, 1047
BauI CACGAG 1 cut(s) 1262
Bbv12I GWGCWC 2 cut(s) 97, 576
BbvI GCAGC 2 cut(s) 646, 721
BccI CCATC 4 cut(s) 26, 106, 1157, 1232
BceAI ACGGC 2 cut(s) 123, 985
BcgI CGANNNNNNTGC 2 cut(s) 927, 961
BciT130I CCWGG 3 cut(s) 407, 578, 857
BciVI GTATCC 1 cut(s) 770
BclI TGATCA 1 cut(s) 1258
BcoDI GTCTC 1 cut(s) 535
BcuI ACTAGT 1 cut(s) 635
BfaI CTAG 7 cut(s) 77, 117, 173, 449, 636, 656, 941
BfmI CTRYAG 1 cut(s) 271
BfuI GTATCC 1 cut(s) 770
BisI GCNGC 5 cut(s) 148, 199, 234, 660, 735
BlsI GCNGC 5 cut(s) 149, 200, 235, 661, 736
BmcAI AGTACT 1 cut(s) 675
Bme1390I CCNGG 3 cut(s) 407, 578, 857
Bme18I GGWCC 1 cut(s) 607
BmeRI GACNNNNNGTC 1 cut(s) 613
BmeT110I CYCGRG 1 cut(s) 90
BmgBI CACGTC 1 cut(s) 898
BmgT120I GGNCC 1 cut(s) 607
BmiI GGNNCC 4 cut(s) 255, 439, 484, 609
BmrFI CCNGG 3 cut(s) 407, 578, 857
BmrI ACTGGG 1 cut(s) 169
BmtI GCTAGC 1 cut(s) 120
BmuI ACTGGG 1 cut(s) 169
BpmI CTGGAG 3 cut(s) 154, 249, 1082
BpuEI CTTGAG 1 cut(s) 977
BsaBI GATNNNNATC 1 cut(s) 1134
BsaI GGTCTC 1 cut(s) 535
BsaJI CCNNGG 3 cut(s) 406, 577, 856
BsaXI ACNNNNNCTCC 4 cut(s) 222, 245, 252, 275
Bsc4I CCNNNNNNNGG 1 cut(s) 848
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 4 cut(s) 137, 164, 721, 1149
Bse21I CCTNAGG 1 cut(s) 567
Bse8I GATNNNNATC 1 cut(s) 1134
BseBI CCWGG 3 cut(s) 407, 578, 857
BseDI CCNNGG 3 cut(s) 406, 577, 856
BseGI GGATG 4 cut(s) 466, 1180, 1240, 1261
BseJI GATNNNNATC 1 cut(s) 1134
BseLI CCNNNNNNNGG 1 cut(s) 848
BseMII CTCAG 7 cut(s) 60, 80, 134, 546, 603, 1197, 1208
BseNI ACTGG 4 cut(s) 137, 164, 721, 1149
BseSI GKGCMC 2 cut(s) 11, 576
BseXI GCAGC 2 cut(s) 646, 721
BsgI GTGCAG 2 cut(s) 645, 720
Bsh1236I CGCG 2 cut(s) 201, 515
BshFI GGCC 1 cut(s) 453
BsiHKAI GWGCWC 2 cut(s) 97, 576
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 2 cut(s) 27, 454
BslFI GGGAC 2 cut(s) 914, 1102
BslI CCNNNNNNNGG 1 cut(s) 848
BsmAI GTCTC 1 cut(s) 535
BsmFI GGGAC 2 cut(s) 914, 1102
BsnI GGCC 1 cut(s) 453
Bso31I GGTCTC 1 cut(s) 535
BsoBI CYCGRG 1 cut(s) 90
Bsp1286I GDGCHC 3 cut(s) 11, 97, 576
BspACI CCGC 7 cut(s) 147, 196, 199, 233, 236, 281, 419
BspANI GGCC 1 cut(s) 453
BspCNI CTCAG 7 cut(s) 59, 79, 135, 545, 604, 1198, 1207
BspFNI CGCG 2 cut(s) 201, 515
BspLI GGNNCC 4 cut(s) 255, 439, 484, 609
BspOI GCTAGC 1 cut(s) 120
BspPI GGATC 4 cut(s) 147, 557, 1106, 1219
BspTNI GGTCTC 1 cut(s) 535
BsrBI CCGCTC 2 cut(s) 147, 233
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 4 cut(s) 137, 164, 721, 1149
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 3 cut(s) 406, 577, 856
BssSI CACGAG 1 cut(s) 1262
Bst2BI CACGAG 1 cut(s) 1262
Bst2UI CCWGG 3 cut(s) 407, 578, 857
Bst4CI ACNGT 1 cut(s) 712
BstC8I GCNNGC 3 cut(s) 28, 118, 838
BstDEI CTNAG 8 cut(s) 46, 66, 143, 532, 567, 612, 1194, 1206
BstF5I GGATG 4 cut(s) 466, 1180, 1240, 1261
BstFNI CGCG 2 cut(s) 201, 515
BstHHI GCGC 1 cut(s) 203
BstMAI GTCTC 1 cut(s) 535
BstMWI GCNNNNNNNGC 5 cut(s) 122, 195, 233, 659, 740
BstNI CCWGG 3 cut(s) 407, 578, 857
BstSCI CCNGG 3 cut(s) 405, 576, 855
BstSFI CTRYAG 1 cut(s) 271
BstSLI GKGCMC 2 cut(s) 11, 576
BstUI CGCG 2 cut(s) 201, 515
BstV1I GCAGC 2 cut(s) 646, 721
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
Bsu36I CCTNAGG 1 cut(s) 567
BsuI GTATCC 1 cut(s) 770
BsuRI GGCC 1 cut(s) 453
BtgZI GCGATG 2 cut(s) 45, 125
BtrI CACGTC 1 cut(s) 898
BtsCI GGATG 4 cut(s) 466, 1180, 1240, 1261
BtsIMutI CAGTG 4 cut(s) 597, 714, 1142, 1202
Cac8I GCNNGC 3 cut(s) 28, 118, 838
CfoI GCGC 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 607
CseI GACGC 2 cut(s) 521, 744
Csp6I GTAC 3 cut(s) 494, 674, 872
CviAII CATG 6 cut(s) 346, 474, 497, 727, 962, 1076
CviQI GTAC 3 cut(s) 494, 674, 872
DdeI CTNAG 8 cut(s) 46, 66, 143, 532, 567, 612, 1194, 1206
DraI TTTAAA 1 cut(s) 865
DriI GACNNNNNGTC 1 cut(s) 613
Eam1105I GACNNNNNGTC 1 cut(s) 613
EciI GGCGGA 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 535
Eco32I GATATC 1 cut(s) 925
Eco47I GGWCC 1 cut(s) 607
Eco81I CCTNAGG 1 cut(s) 567
Eco88I CYCGRG 1 cut(s) 90
EcoRII CCWGG 3 cut(s) 405, 576, 855
EcoRV GATATC 1 cut(s) 925
FaeI CATG 6 cut(s) 349, 477, 500, 730, 965, 1079
FalI AAGNNNNNCTT 2 cut(s) 660, 692
FaqI GGGAC 2 cut(s) 914, 1102
FatI CATG 6 cut(s) 345, 473, 496, 726, 961, 1075
FbaI TGATCA 1 cut(s) 1258
FblI GTMKAC 1 cut(s) 169
Fnu4HI GCNGC 5 cut(s) 148, 199, 234, 660, 735
FokI GGATG 4 cut(s) 473, 1187, 1247, 1268
Fsp4HI GCNGC 5 cut(s) 148, 199, 234, 660, 735
FspBI CTAG 7 cut(s) 77, 117, 173, 449, 636, 656, 941
GlaI GCGC 1 cut(s) 202
GluI GCNGC 5 cut(s) 148, 199, 234, 660, 735
GsuI CTGGAG 3 cut(s) 154, 249, 1082
HaeIII GGCC 1 cut(s) 453
HapII CCGG 2 cut(s) 27, 454
HgaI GACGC 2 cut(s) 521, 744
HhaI GCGC 1 cut(s) 203
Hin1II CATG 6 cut(s) 349, 477, 500, 730, 965, 1079
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 3 cut(s) 614, 944, 981
HpaII CCGG 2 cut(s) 27, 454
HphI GGTGA 5 cut(s) 230, 259, 361, 433, 704
Hpy166II GTNNAC 6 cut(s) 87, 170, 511, 574, 1150, 1203
Hpy188I TCNGA 7 cut(s) 49, 144, 378, 551, 760, 968, 1111
Hpy188III TCNNGA 9 cut(s) 182, 466, 642, 884, 1006, 1019, 1061, 1133, 1262
Hpy8I GTNNAC 6 cut(s) 87, 170, 511, 574, 1150, 1203
HpyAV CCTTC 3 cut(s) 244, 428, 1165
HpyCH4III ACNGT 1 cut(s) 712
HpyCH4IV ACGT 1 cut(s) 897
HpyCH4V TGCA 9 cut(s) 4, 125, 368, 574, 662, 737, 1054, 1075, 1085
HpyF10VI GCNNNNNNNGC 5 cut(s) 122, 195, 233, 659, 740
HpyF3I CTNAG 8 cut(s) 46, 66, 143, 532, 567, 612, 1194, 1206
HpySE526I ACGT 1 cut(s) 897
Hsp92II CATG 6 cut(s) 349, 477, 500, 730, 965, 1079
HspAI GCGC 1 cut(s) 201
KroI GCCGGC 1 cut(s) 26
KroNI GCCGGC 1 cut(s) 28
Ksp22I TGATCA 1 cut(s) 1258
LmnI GCTCC 2 cut(s) 230, 253
Lsp1109I GCAGC 2 cut(s) 646, 721
MaeI CTAG 7 cut(s) 77, 117, 173, 449, 636, 656, 941
MaeII ACGT 1 cut(s) 897
MaeIII GTNAC 6 cut(s) 421, 712, 719, 817, 907, 1030
MbiI CCGCTC 2 cut(s) 147, 233
MboII GAAGA 7 cut(s) 51, 62, 65, 277, 707, 884, 1222
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 3 cut(s) 11, 97, 576
MluCI AATT 4 cut(s) 523, 744, 867, 1118
MlyI GAGTC 1 cut(s) 623
MmeI TCCRAC 2 cut(s) 946, 1233
MnlI CCTC 9 cut(s) 129, 157, 189, 450, 473, 628, 852, 1057, 1258
MroNI GCCGGC 1 cut(s) 26
MroXI GAANNNNTTC 1 cut(s) 891
MseI TTAA 2 cut(s) 666, 864
MslI CAYNNNNRTG 2 cut(s) 216, 602
MspI CCGG 2 cut(s) 27, 454
MspR9I CCNGG 3 cut(s) 407, 578, 857
MvaI CCWGG 3 cut(s) 407, 578, 857
MvnI CGCG 2 cut(s) 201, 515
MwoI GCNNNNNNNGC 5 cut(s) 122, 195, 233, 659, 740
NaeI GCCGGC 1 cut(s) 28
NgoMIV GCCGGC 1 cut(s) 26
NheI GCTAGC 1 cut(s) 116
NlaIII CATG 6 cut(s) 349, 477, 500, 730, 965, 1079
NlaIV GGNNCC 4 cut(s) 255, 439, 484, 609
NmuCI GTSAC 6 cut(s) 421, 712, 719, 817, 907, 1030
PaeR7I CTCGAG 1 cut(s) 90
PdiI GCCGGC 1 cut(s) 28
PdmI GAANNNNTTC 1 cut(s) 891
PfeI GAWTC 2 cut(s) 944, 981
PkrI GCNGC 5 cut(s) 149, 200, 235, 661, 736
PleI GAGTC 1 cut(s) 622
PpsI GAGTC 1 cut(s) 622
Psp6I CCWGG 3 cut(s) 405, 576, 855
PspGI CCWGG 3 cut(s) 405, 576, 855
PspN4I GGNNCC 4 cut(s) 255, 439, 484, 609
PspPI GGNCC 1 cut(s) 607
PspXI VCTCGAGB 1 cut(s) 90
PsuI RGATCY 1 cut(s) 139
RsaI GTAC 3 cut(s) 495, 675, 873
RsaNI GTAC 3 cut(s) 494, 674, 872
RseI CAYNNNNRTG 2 cut(s) 216, 602
SaqAI TTAA 2 cut(s) 666, 864
SatI GCNGC 5 cut(s) 148, 199, 234, 660, 735
Sau96I GGNCC 1 cut(s) 607
ScaI AGTACT 1 cut(s) 675
SchI GAGTC 1 cut(s) 623
ScrFI CCNGG 3 cut(s) 407, 578, 857
SduI GDGCHC 3 cut(s) 11, 97, 576
SetI ASST 8 cut(s) 122, 315, 538, 573, 661, 810, 826, 900
SfcI CTRYAG 1 cut(s) 271
Sfr274I CTCGAG 1 cut(s) 90
SinI GGWCC 1 cut(s) 607
SlaI CTCGAG 1 cut(s) 90
SmiMI CAYNNNNRTG 2 cut(s) 216, 602
SmlI CTYRAG 2 cut(s) 90, 992
SmoI CTYRAG 2 cut(s) 90, 992
SpeI ACTAGT 1 cut(s) 635
Sse9I AATT 4 cut(s) 523, 744, 867, 1118
SsiI CCGC 7 cut(s) 147, 196, 199, 233, 236, 281, 419
SspI AATATT 1 cut(s) 359
SspMI CTAG 7 cut(s) 77, 117, 173, 449, 636, 656, 941
StyD4I CCNGG 3 cut(s) 405, 576, 855
TaaI ACNGT 1 cut(s) 712
TaiI ACGT 1 cut(s) 900
TaqI TCGA 4 cut(s) 91, 183, 263, 984
TasI AATT 4 cut(s) 523, 744, 867, 1118
TatI WGTACW 2 cut(s) 673, 871
TauI GCSGC 3 cut(s) 150, 201, 236
TfiI GAWTC 2 cut(s) 944, 981
Tru1I TTAA 2 cut(s) 666, 864
Tru9I TTAA 2 cut(s) 666, 864
TscAI CASTG 4 cut(s) 604, 721, 1149, 1202
TseFI GTSAC 6 cut(s) 421, 712, 719, 817, 907, 1030
TseI GCWGC 2 cut(s) 659, 734
Tsp45I GTSAC 6 cut(s) 421, 712, 719, 817, 907, 1030
TspDTI ATGAA 7 cut(s) 200, 447, 462, 696, 758, 950, 1191
TspGWI ACGGA 1 cut(s) 789
TspRI CASTG 4 cut(s) 604, 721, 1149, 1202
VneI GTGCAC 1 cut(s) 572
VpaK11BI GGWCC 1 cut(s) 607
XcmI CCANNNNNNNNNTGG 1 cut(s) 1235
XhoI CTCGAG 1 cut(s) 90
XmiI GTMKAC 1 cut(s) 169
XmnI GAANNNNTTC 1 cut(s) 891
XspI CTAG 7 cut(s) 77, 117, 173, 449, 636, 656, 941
ZrmI AGTACT 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.