Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002154

Physical Location & Seq

Genomic Coordinates Forward (+)

48643329 .. 48644676

Gene Structure 1348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003452

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGCTAGCTTTGCAGAAAACTGGAGGGATCTGAGCGGCAAGAACGACTGGGAGGGTCTACTAGACCCTCTCGACATCAATCTCCGCCGCTATATCATTCACTATGGTGAAAGGGCTGGAGCGACGATATTCGTGGTGAAGGAGCGAAAGTCGAAGAACTACAGACTTCCGCAATACGCAAAGGGACATTTGTTCGCAAAGGTGGGTTTGGAGAGTGGTAATCCATACAAGTACATGGTGAAAAAATATTTTTATGCAACTCATCTGGAACTTTCGCCCAAGAAATCAAACTTCCTGGGTTTTGTTGCGGTGACAACTGATGAAGGAACCAAAGTGCTAGGCCGGAGGGATGTCTTGATTTCATGGAGAGGAACCACATTGGTACATGAGTGGCTTGTTGACGTGAAGATCAATTTGGTCTCAGCTTCTCACATTCTGGGAGAGGAGAATGATCCTAAGGTGCACCAGGGTTGGCTTTCCTATTACACTGATATGGACCCTGAGTCCTCACACAATCAACTTACTAGTTCCAGAGATCAGGCTCTAGCTGCACTTAAAGAGGTACTTGATGAATACAAGGGTGAAGAAATCAGCATTACTGTCACTGGTCACAGCATGGGTGCTGCACTCGCAATTCTAAATGCGTCTGATATTGTTCATAACGGATACAATAAAATGACAGATCAACCAAAGAAGGTCATTCCTGTCACAGCTATTGTGTTTGCCTGCCCTCGTCTTGGAAACCAGGGTTTTAAAAATGTACTTTCTGGTCTTGAAAATCTTCACGTCTTGCGTGTCACAAATGACCAAGACATCGTCCCTAAAGCATCAGAATCGGTGGATTATGTTCATGTTGGAAAAGAGTTGAGAATCGACACTCTCAAGTCGCCGTTCTTGAAAGTTATTCCGGATACTAATGTCACAGAAAAACTTAATAATTTGCACGATCTGGAGGCTTACTTGCATGGAGTTGCAGGGACACAGGGGATCAAAAGTTCTGATTTCAAATTGGAAGTTGATCGTGATCTCGCACTGGTAAACAAGTTTATTGATGGCGTGAAGGATGAACATAATATAGTAGCTGAGTGGTGGACTGAGAAGAATAAGTCTTTGATCCAAATGGATGATGGCTCTTGGGTGTTGGATGATCACGAGGAAGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

389

Amino Acids

43.77

Weight (kDa)

5.7

Isoelectric Point (pI)

26.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	120 - 277	4.4e-33	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19750 FvH4_5g19760
malus_domestica	MD04G1058700.v1.1
prunus_persica	Prupe.5G062500_v2.0.a1 Prupe.5G062600_v2.0.a1 Prupe.5G062700_v2.0.a1
pyrus_communis	pycom04g05260
rosa_chinensis	RchiOBHm_Chr7g0203651 RchiOBHm_Chr7g0203681 RchiOBHm_Chr7g0204521 RchiOBHm_Chr7g0204541
rosa_laevigata	RLG00000003452 RLG00000003453 RLG00000003512
rosa_multiflora	Rmu_co8274427.1_g000001 Rmu_co8340383.1_g000001 Rmu_sc0005354.1_g000007 Rmu_ssc0000443.1_g000023 Rmu_ssc0000443.1_g000033
rosa_roxburghii	Rroxscaffold_3G00253010 Rroxscaffold_3G00253020 Rroxscaffold_3G00253540 Rroxscaffold_3G00253610 Rroxscaffold_6G00397050 Rroxscaffold_6G00397100
rosa_rugosa	Rorug07G0078000 Rorug07G0084900 Rorug07G0085000
rosa_samantha	Rh7AG207600 Rh7AG214200 Rh7AG214300 Rh7BG206900 Rh7BG211700 Rh7BG211800 Rh7CG219900 Rh7CG227300 Rh7DG214500 Rh7DG214700 Rh7DG221800 Rh7DG222000
rosa_wichuraiana	Rw7G018100 Rw7G018570 Rw7G018580 Rw7G018590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	36
AccI	GTMKAC	1 cut(s)	58
AccIII	TCCGGA	1 cut(s)	907
AciI	CCGC	5 cut(s)	36, 85, 88, 170, 308
AclWI	GGATC	4 cut(s)	36, 446, 995, 1108
AfaI	GTAC	4 cut(s)	233, 384, 564, 762
AfiI	CCNNNNNNNGG	1 cut(s)	737
AgsI	TTSAA	3 cut(s)	776, 898, 1006
AhdI	GACNNNNNGTC	1 cut(s)	502
AhlI	ACTAGT	1 cut(s)	524
AjiI	CACGTC	2 cut(s)	403, 787
AjnI	CCWGG	3 cut(s)	294, 465, 744
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AleI	CACNNNNGTG	1 cut(s)	105
AloI	GAACNNNNNNTCC	2 cut(s)	979, 1011
AluBI	AGCT	5 cut(s)	9, 425, 548, 713, 1082
AluI	AGCT	5 cut(s)	9, 425, 548, 713, 1082
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	1 cut(s)	424
Alw44I	GTGCAC	1 cut(s)	461
AlwI	GGATC	4 cut(s)	36, 446, 995, 1108
Aor13HI	TCCGGA	1 cut(s)	907
AoxI	GGCC	1 cut(s)	340
ApaLI	GTGCAC	1 cut(s)	461
ApeKI	GCWGC	2 cut(s)	548, 623
Asp700I	GAANNNNTTC	1 cut(s)	780
AspS9I	GGNCC	1 cut(s)	496
AsuHPI	GGTGA	5 cut(s)	119, 148, 250, 322, 593
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	496
AxyI	CCTNAGG	1 cut(s)	456
BaeGI	GKGCMC	1 cut(s)	465
BaeI	ACNNNNGTAYC	4 cut(s)	374, 407, 903, 936
BauI	CACGAG	1 cut(s)	1151
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	2 cut(s)	535, 610
BccI	CCATC	2 cut(s)	1046, 1121
BceAI	ACGGC	1 cut(s)	874
BcgI	CGANNNNNNTGC	2 cut(s)	816, 850
BciT130I	CCWGG	3 cut(s)	296, 467, 746
BciVI	GTATCC	2 cut(s)	659, 904
BclI	TGATCA	1 cut(s)	1147
BcoDI	GTCTC	1 cut(s)	424
BcuI	ACTAGT	1 cut(s)	524
BfaI	CTAG	5 cut(s)	6, 62, 338, 525, 545
BfmI	CTRYAG	1 cut(s)	160
BfuI	GTATCC	2 cut(s)	659, 904
BisI	GCNGC	4 cut(s)	37, 88, 549, 624
BlsI	GCNGC	4 cut(s)	38, 89, 550, 625
Bme1390I	CCNGG	3 cut(s)	296, 467, 746
Bme18I	GGWCC	1 cut(s)	496
BmeRI	GACNNNNNGTC	1 cut(s)	502
BmgBI	CACGTC	2 cut(s)	403, 787
BmgT120I	GGNCC	1 cut(s)	496
BmiI	GGNNCC	3 cut(s)	328, 373, 498
BmrFI	CCNGG	3 cut(s)	296, 467, 746
BmrI	ACTGGG	1 cut(s)	58
BmsI	GCATC	1 cut(s)	836
BmtI	GCTAGC	1 cut(s)	9
BmuI	ACTGGG	1 cut(s)	58
BpmI	CTGGAG	3 cut(s)	43, 138, 971
BpuEI	CTTGAG	1 cut(s)	866
BsaBI	GATNNNNATC	1 cut(s)	1023
BsaI	GGTCTC	1 cut(s)	424
BsaJI	CCNNGG	3 cut(s)	295, 466, 745
BsaWI	WCCGGW	1 cut(s)	907
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	737
Bse1I	ACTGG	4 cut(s)	26, 53, 610, 1038
Bse21I	CCTNAGG	1 cut(s)	456
Bse8I	GATNNNNATC	1 cut(s)	1023
BseAI	TCCGGA	1 cut(s)	907
BseBI	CCWGG	3 cut(s)	296, 467, 746
BseDI	CCNNGG	3 cut(s)	295, 466, 745
BseGI	GGATG	4 cut(s)	355, 1069, 1129, 1150
BseJI	GATNNNNATC	1 cut(s)	1023
BseLI	CCNNNNNNNGG	1 cut(s)	737
BseMII	CTCAG	5 cut(s)	23, 435, 492, 1074, 1086
BseNI	ACTGG	4 cut(s)	26, 53, 610, 1038
BseRI	GAGGAG	1 cut(s)	458
BseSI	GKGCMC	1 cut(s)	465
BseXI	GCAGC	2 cut(s)	535, 610
BsgI	GTGCAG	2 cut(s)	534, 609
BshFI	GGCC	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	2 cut(s)	343, 908
BslFI	GGGAC	3 cut(s)	198, 803, 991
BslI	CCNNNNNNNGG	1 cut(s)	737
BsmAI	GTCTC	1 cut(s)	424
BsmFI	GGGAC	3 cut(s)	198, 803, 991
BsnI	GGCC	1 cut(s)	342
Bso31I	GGTCTC	1 cut(s)	424
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp13I	TCCGGA	1 cut(s)	907
BspACI	CCGC	5 cut(s)	36, 85, 88, 170, 308
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	5 cut(s)	24, 434, 493, 1075, 1087
BspEI	TCCGGA	1 cut(s)	907
BspLI	GGNNCC	3 cut(s)	328, 373, 498
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	4 cut(s)	36, 446, 995, 1108
BspTNI	GGTCTC	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	36
BsrI	ACTGG	4 cut(s)	26, 53, 610, 1038
BssECI	CCNNGG	3 cut(s)	295, 466, 745
BssSI	CACGAG	1 cut(s)	1151
Bst2BI	CACGAG	1 cut(s)	1151
Bst2UI	CCWGG	3 cut(s)	296, 467, 746
Bst4CI	ACNGT	1 cut(s)	601
BstC8I	GCNNGC	2 cut(s)	7, 727
BstDEI	CTNAG	6 cut(s)	32, 421, 456, 501, 1083, 1095
BstF5I	GGATG	4 cut(s)	355, 1069, 1129, 1150
BstMAI	GTCTC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 548, 629
BstNI	CCWGG	3 cut(s)	296, 467, 746
BstSCI	CCNGG	3 cut(s)	294, 465, 744
BstSFI	CTRYAG	1 cut(s)	160
BstSLI	GKGCMC	1 cut(s)	465
BstV1I	GCAGC	2 cut(s)	535, 610
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
Bsu36I	CCTNAGG	1 cut(s)	456
BsuI	GTATCC	2 cut(s)	659, 904
BsuRI	GGCC	1 cut(s)	342
BtrI	CACGTC	2 cut(s)	403, 787
BtsCI	GGATG	4 cut(s)	355, 1069, 1129, 1150
BtsIMutI	CAGTG	3 cut(s)	486, 603, 1031
Cac8I	GCNNGC	2 cut(s)	7, 727
Cfr13I	GGNCC	1 cut(s)	496
CseI	GACGC	1 cut(s)	633
Csp6I	GTAC	4 cut(s)	232, 383, 563, 761
CviAII	CATG	6 cut(s)	235, 363, 386, 616, 851, 965
CviQI	GTAC	4 cut(s)	232, 383, 563, 761
DdeI	CTNAG	6 cut(s)	32, 421, 456, 501, 1083, 1095
DraI	TTTAAA	1 cut(s)	754
DriI	GACNNNNNGTC	1 cut(s)	502
Eam1105I	GACNNNNNGTC	1 cut(s)	502
EciI	GGCGGA	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	496
Eco81I	CCTNAGG	1 cut(s)	456
EcoRII	CCWGG	3 cut(s)	294, 465, 744
FaeI	CATG	6 cut(s)	238, 366, 389, 619, 854, 968
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FaqI	GGGAC	3 cut(s)	198, 803, 991
FatI	CATG	6 cut(s)	234, 362, 385, 615, 850, 964
FbaI	TGATCA	1 cut(s)	1147
FblI	GTMKAC	1 cut(s)	58
Fnu4HI	GCNGC	4 cut(s)	37, 88, 549, 624
FokI	GGATG	4 cut(s)	362, 1076, 1136, 1157
Fsp4HI	GCNGC	4 cut(s)	37, 88, 549, 624
FspBI	CTAG	5 cut(s)	6, 62, 338, 525, 545
GluI	GCNGC	4 cut(s)	37, 88, 549, 624
GsuI	CTGGAG	3 cut(s)	43, 138, 971
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	2 cut(s)	343, 908
HgaI	GACGC	1 cut(s)	633
Hin1II	CATG	6 cut(s)	238, 366, 389, 619, 854, 968
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	3 cut(s)	503, 833, 870
HpaII	CCGG	2 cut(s)	343, 908
HphI	GGTGA	5 cut(s)	119, 148, 250, 322, 593
Hpy166II	GTNNAC	5 cut(s)	59, 400, 463, 1039, 1092
Hpy188I	TCNGA	4 cut(s)	33, 649, 832, 1000
Hpy8I	GTNNAC	5 cut(s)	59, 400, 463, 1039, 1092
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	4 cut(s)	133, 317, 688, 1054
HpyCH4III	ACNGT	1 cut(s)	601
HpyCH4IV	ACGT	2 cut(s)	402, 786
HpyCH4V	TGCA	8 cut(s)	14, 257, 463, 551, 626, 943, 964, 974
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 548, 629
HpyF3I	CTNAG	6 cut(s)	32, 421, 456, 501, 1083, 1095
HpySE526I	ACGT	2 cut(s)	402, 786
Hsp92II	CATG	6 cut(s)	238, 366, 389, 619, 854, 968
Kpn2I	TCCGGA	1 cut(s)	907
Ksp22I	TGATCA	1 cut(s)	1147
LmnI	GCTCC	2 cut(s)	119, 142
Lsp1109I	GCAGC	2 cut(s)	535, 610
LweI	GCATC	1 cut(s)	836
MaeI	CTAG	5 cut(s)	6, 62, 338, 525, 545
MaeII	ACGT	2 cut(s)	402, 786
MaeIII	GTNAC	6 cut(s)	310, 601, 608, 706, 796, 919
MbiI	CCGCTC	1 cut(s)	36
MboII	GAAGA	5 cut(s)	166, 418, 596, 773, 1111
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	465
MluCI	AATT	4 cut(s)	412, 633, 937, 1007
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	2 cut(s)	835, 1122
MroI	TCCGGA	1 cut(s)	907
MroXI	GAANNNNTTC	1 cut(s)	780
MseI	TTAA	3 cut(s)	555, 753, 933
MslI	CAYNNNNRTG	2 cut(s)	105, 491
MspI	CCGG	2 cut(s)	343, 908
MspR9I	CCNGG	3 cut(s)	296, 467, 746
MvaI	CCWGG	3 cut(s)	296, 467, 746
MwoI	GCNNNNNNNGC	3 cut(s)	11, 548, 629
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	6 cut(s)	238, 366, 389, 619, 854, 968
NlaIV	GGNNCC	3 cut(s)	328, 373, 498
NmuCI	GTSAC	6 cut(s)	310, 601, 608, 706, 796, 919
OliI	CACNNNNGTG	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	780
PfeI	GAWTC	2 cut(s)	833, 870
PflFI	GACNNNGTC	1 cut(s)	815
PkrI	GCNGC	4 cut(s)	38, 89, 550, 625
PleI	GAGTC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	511
Psp6I	CCWGG	3 cut(s)	294, 465, 744
PspGI	CCWGG	3 cut(s)	294, 465, 744
PspN4I	GGNNCC	3 cut(s)	328, 373, 498
PspPI	GGNCC	1 cut(s)	496
PsuI	RGATCY	1 cut(s)	28
PsyI	GACNNNGTC	1 cut(s)	815
RsaI	GTAC	4 cut(s)	233, 384, 564, 762
RsaNI	GTAC	4 cut(s)	232, 383, 563, 761
RseI	CAYNNNNRTG	2 cut(s)	105, 491
SaqAI	TTAA	3 cut(s)	555, 753, 933
SatI	GCNGC	4 cut(s)	37, 88, 549, 624
Sau96I	GGNCC	1 cut(s)	496
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	3 cut(s)	296, 467, 746
SduI	GDGCHC	1 cut(s)	465
SfaNI	GCATC	1 cut(s)	836
SfcI	CTRYAG	1 cut(s)	160
SinI	GGWCC	1 cut(s)	496
SmiMI	CAYNNNNRTG	2 cut(s)	105, 491
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
SpeI	ACTAGT	1 cut(s)	524
Sse9I	AATT	4 cut(s)	412, 633, 937, 1007
SsiI	CCGC	5 cut(s)	36, 85, 88, 170, 308
SspI	AATATT	1 cut(s)	248
SspMI	CTAG	5 cut(s)	6, 62, 338, 525, 545
StyD4I	CCNGG	3 cut(s)	294, 465, 744
TaaI	ACNGT	1 cut(s)	601
TaiI	ACGT	2 cut(s)	405, 789
TaqI	TCGA	3 cut(s)	72, 152, 873
TasI	AATT	4 cut(s)	412, 633, 937, 1007
TatI	WGTACW	2 cut(s)	231, 760
TauI	GCSGC	2 cut(s)	39, 90
TfiI	GAWTC	2 cut(s)	833, 870
Tru1I	TTAA	3 cut(s)	555, 753, 933
Tru9I	TTAA	3 cut(s)	555, 753, 933
TscAI	CASTG	3 cut(s)	493, 610, 1038
TseFI	GTSAC	6 cut(s)	310, 601, 608, 706, 796, 919
TseI	GCWGC	2 cut(s)	548, 623
Tsp45I	GTSAC	6 cut(s)	310, 601, 608, 706, 796, 919
TspDTI	ATGAA	6 cut(s)	336, 351, 585, 647, 839, 1080
TspGWI	ACGGA	1 cut(s)	678
TspRI	CASTG	3 cut(s)	493, 610, 1038
Tth111I	GACNNNGTC	1 cut(s)	815
VneI	GTGCAC	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1124
XmiI	GTMKAC	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	780
XspI	CTAG	5 cut(s)	6, 62, 338, 525, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.