Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002154

Physical Location & Seq

Genomic Coordinates Reverse (-)

21168410 .. 21176350

Gene Structure 7941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG227300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGCTAGCTTTGCAGAAAACTGGAGGGATCTGAGCGGCAAGAACGACTGGGAGGATCTACTAGACCCTCTTGACATCAATCTCCGCCGCGCTATCATTCACTACGGTGAAAGGGCTGGAGCGGCGGTATTCGTGGTGAAGGAGCCAAAGTCGAAGAACTACAGACTTCCGCAATACGCAAAAGGACATTTGTTCGCAAAGGTGGGTTTGGAGAGTGGTAATCCATACAAGTACATGGTGAAAAAATATTTTTATGCAACTCATCTGGAACTTTCGCCCAAGAAATCAAACTTCCTGGGTTTTGTTGCGGTGACAACTGATGAAGGAACCAAAGTGCTAGGCCGGAGGGATGTCTTGATTTCATGGAGAGGAACCACATTGGTACATGAGTGGCTTGTTGACGTGAACATCAATTTGGTCTCAGCTTCTCACATTCTCGGAGAGGAGAATGATCCTAAGGTGCACCAGGGTTGGCTTTCCTATTACACTGATATGGACCCTGAGTCCTCACACAATCAACTTACTAGTTCCAGAGATCAGGCTCTAGCTGCACTTAAAGAAGTACTTGATGAATACAAGGGTGAAGAAATCAGCATTACTGTCACTGGTCACAGCATGGGTGCTGCACTCGCAATTCTAAATGCGTCTGATATTGTTCATAACGGATACAATAAAATGACAGATCAACCAAATAAGGTCATTCCTGTCACAGCTATTGTGTTTGCCTGCCCTCGTCTTGGAAACCAGGGTTTTAAAATTGTACTTTCTGGTCTTGAAAATCTTCACGTCTTGCGTGTCACAAATGACCAAGATATCGTCCCTAAAGCACCAGAATCGGTGGATTATGTTCATGTCGGAAAAGAGTTGAGAATCGACACTCTCAAGTCGCCGTTCTTGAAAGTTATTCCTGATACTAATGTCACAGAAAAACTTATCCATTTGCACGATCTGGAGGCTTACTTGCATGGAGTTGCAGGGACACAGGGGATCAAAAGTTCTGATTTCAAATTGAAAGTTGATCGTGATCTGGCACTGGAGGCTGTTGCAATAAGGAAGAGAAACAAGTCTGATCAAATTAAGTTCTTGATTCCTCTCATCTACGGCCCTGTTCTTCCCCTCATTCGGCTCGCACTGCGAAAGAATCCGGTGCACGGAGTCATGACAGAAGCATGCACCAACTGTTCAACAATTTCAATCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

400

Amino Acids

44.64

Weight (kDa)

7.27

Isoelectric Point (pI)

30.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	120 - 278	7.1e-33	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19750 FvH4_5g19760
malus_domestica	MD04G1058700.v1.1
prunus_persica	Prupe.5G062500_v2.0.a1 Prupe.5G062600_v2.0.a1 Prupe.5G062700_v2.0.a1
pyrus_communis	pycom04g05260
rosa_chinensis	RchiOBHm_Chr7g0203651 RchiOBHm_Chr7g0203681 RchiOBHm_Chr7g0204521 RchiOBHm_Chr7g0204541
rosa_laevigata	RLG00000003452 RLG00000003453 RLG00000003512
rosa_multiflora	Rmu_co8274427.1_g000001 Rmu_co8340383.1_g000001 Rmu_sc0005354.1_g000007 Rmu_ssc0000443.1_g000023 Rmu_ssc0000443.1_g000033
rosa_roxburghii	Rroxscaffold_3G00253010 Rroxscaffold_3G00253020 Rroxscaffold_3G00253540 Rroxscaffold_3G00253610 Rroxscaffold_6G00397050 Rroxscaffold_6G00397100
rosa_rugosa	Rorug07G0078000 Rorug07G0084900 Rorug07G0085000
rosa_samantha	Rh7AG207600 Rh7AG214200 Rh7AG214300 Rh7BG206900 Rh7BG211700 Rh7BG211800 Rh7CG219900 Rh7CG227300 Rh7DG214500 Rh7DG214700 Rh7DG221800 Rh7DG222000
rosa_wichuraiana	Rw7G018100 Rw7G018570 Rw7G018580 Rw7G018590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	36, 122
AccII	CGCG	1 cut(s)	90
AciI	CCGC	7 cut(s)	36, 85, 88, 122, 125, 170, 308
AclWI	GGATC	4 cut(s)	36, 63, 446, 995
AfaI	GTAC	4 cut(s)	233, 384, 564, 762
AfiI	CCNNNNNNNGG	3 cut(s)	737, 1122, 1151
AgsI	TTSAA	6 cut(s)	776, 898, 1006, 1012, 1185, 1194
AhdI	GACNNNNNGTC	1 cut(s)	502
AhlI	ACTAGT	1 cut(s)	524
AjiI	CACGTC	2 cut(s)	403, 787
AjnI	CCWGG	3 cut(s)	294, 465, 744
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AleI	CACNNNNGTG	1 cut(s)	105
AloI	GAACNNNNNNTCC	2 cut(s)	979, 1011
AluBI	AGCT	4 cut(s)	9, 425, 548, 713
AluI	AGCT	4 cut(s)	9, 425, 548, 713
Alw21I	GWGCWC	2 cut(s)	465, 1152
Alw26I	GTCTC	1 cut(s)	424
Alw44I	GTGCAC	2 cut(s)	461, 1148
AlwI	GGATC	4 cut(s)	36, 63, 446, 995
AoxI	GGCC	2 cut(s)	340, 1102
ApaLI	GTGCAC	2 cut(s)	461, 1148
ApeKI	GCWGC	2 cut(s)	548, 623
Asp700I	GAANNNNTTC	1 cut(s)	780
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	496, 1103
AsuHPI	GGTGA	5 cut(s)	119, 148, 250, 322, 593
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	496
AxyI	CCTNAGG	1 cut(s)	456
BaeGI	GKGCMC	2 cut(s)	465, 1152
BaeI	ACNNNNGTAYC	4 cut(s)	374, 407, 903, 936
Bbv12I	GWGCWC	2 cut(s)	465, 1152
BbvI	GCAGC	2 cut(s)	535, 610
BceAI	ACGGC	2 cut(s)	874, 1117
BcgI	CGANNNNNNTGC	2 cut(s)	816, 850
BciT130I	CCWGG	3 cut(s)	296, 467, 746
BciVI	GTATCC	1 cut(s)	659
BclI	TGATCA	1 cut(s)	1069
BcoDI	GTCTC	1 cut(s)	424
BcuI	ACTAGT	1 cut(s)	524
BfaI	CTAG	5 cut(s)	6, 62, 338, 525, 545
BfmI	CTRYAG	1 cut(s)	160
BfuI	GTATCC	1 cut(s)	659
BisI	GCNGC	5 cut(s)	37, 88, 123, 549, 624
BlsI	GCNGC	5 cut(s)	38, 89, 124, 550, 625
BmcAI	AGTACT	1 cut(s)	564
Bme1390I	CCNGG	3 cut(s)	296, 467, 746
Bme18I	GGWCC	1 cut(s)	496
BmeRI	GACNNNNNGTC	1 cut(s)	502
BmgBI	CACGTC	2 cut(s)	403, 787
BmgT120I	GGNCC	2 cut(s)	496, 1103
BmiI	GGNNCC	4 cut(s)	144, 328, 373, 498
BmrFI	CCNGG	3 cut(s)	296, 467, 746
BmrI	ACTGGG	1 cut(s)	58
BmtI	GCTAGC	1 cut(s)	9
BmuI	ACTGGG	1 cut(s)	58
BpmI	CTGGAG	4 cut(s)	43, 138, 971, 1055
BpuEI	CTTGAG	1 cut(s)	866
BsaBI	GATNNNNATC	1 cut(s)	1023
BsaI	GGTCTC	1 cut(s)	424
BsaJI	CCNNGG	3 cut(s)	295, 466, 745
BsaWI	WCCGGW	1 cut(s)	1144
BsaXI	ACNNNNNCTCC	4 cut(s)	111, 134, 141, 164
Bsc4I	CCNNNNNNNGG	3 cut(s)	737, 1122, 1151
Bse1I	ACTGG	4 cut(s)	26, 53, 610, 1038
Bse21I	CCTNAGG	1 cut(s)	456
Bse8I	GATNNNNATC	1 cut(s)	1023
BseBI	CCWGG	3 cut(s)	296, 467, 746
BseDI	CCNNGG	3 cut(s)	295, 466, 745
BseGI	GGATG	1 cut(s)	355
BseJI	GATNNNNATC	1 cut(s)	1023
BseLI	CCNNNNNNNGG	3 cut(s)	737, 1122, 1151
BseMII	CTCAG	3 cut(s)	23, 435, 492
BseNI	ACTGG	4 cut(s)	26, 53, 610, 1038
BseRI	GAGGAG	1 cut(s)	458
BseSI	GKGCMC	2 cut(s)	465, 1152
BseXI	GCAGC	2 cut(s)	535, 610
BsgI	GTGCAG	2 cut(s)	534, 609
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	342, 1104
BsiHKAI	GWGCWC	2 cut(s)	465, 1152
BsiSI	CCGG	2 cut(s)	343, 1145
BslFI	GGGAC	2 cut(s)	803, 991
BslI	CCNNNNNNNGG	3 cut(s)	737, 1122, 1151
BsmAI	GTCTC	1 cut(s)	424
BsmFI	GGGAC	2 cut(s)	803, 991
BsnI	GGCC	2 cut(s)	342, 1104
Bso31I	GGTCTC	1 cut(s)	424
Bsp1286I	GDGCHC	2 cut(s)	465, 1152
BspACI	CCGC	7 cut(s)	36, 85, 88, 122, 125, 170, 308
BspANI	GGCC	2 cut(s)	342, 1104
BspCNI	CTCAG	3 cut(s)	24, 434, 493
BspFNI	CGCG	1 cut(s)	90
BspHI	TCATGA	1 cut(s)	1158
BspLI	GGNNCC	4 cut(s)	144, 328, 373, 498
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	4 cut(s)	36, 63, 446, 995
BspTNI	GGTCTC	1 cut(s)	424
BsrBI	CCGCTC	2 cut(s)	36, 122
BsrI	ACTGG	4 cut(s)	26, 53, 610, 1038
BssECI	CCNNGG	3 cut(s)	295, 466, 745
Bst2UI	CCWGG	3 cut(s)	296, 467, 746
Bst4CI	ACNGT	3 cut(s)	107, 601, 1181
Bst6I	CTCTTC	1 cut(s)	1049
BstC8I	GCNNGC	4 cut(s)	7, 727, 1128, 1171
BstDEI	CTNAG	4 cut(s)	32, 421, 456, 501
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	92
BstMAI	GTCTC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 122, 548, 629, 1037, 1132
BstNI	CCWGG	3 cut(s)	296, 467, 746
BstNSI	RCATGY	1 cut(s)	1173
BstSCI	CCNGG	3 cut(s)	294, 465, 744
BstSFI	CTRYAG	1 cut(s)	160
BstSLI	GKGCMC	2 cut(s)	465, 1152
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	535, 610
BstX2I	RGATCY	2 cut(s)	28, 55
BstYI	RGATCY	2 cut(s)	28, 55
Bsu36I	CCTNAGG	1 cut(s)	456
BsuI	GTATCC	1 cut(s)	659
BsuRI	GGCC	2 cut(s)	342, 1104
BtrI	CACGTC	2 cut(s)	403, 787
BtsCI	GGATG	1 cut(s)	355
BtsI	GCAGTG	1 cut(s)	1130
BtsIMutI	CAGTG	4 cut(s)	486, 603, 1031, 1130
Cac8I	GCNNGC	4 cut(s)	7, 727, 1128, 1171
CciI	TCATGA	1 cut(s)	1158
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	496, 1103
CseI	GACGC	1 cut(s)	633
Csp6I	GTAC	4 cut(s)	232, 383, 563, 761
CviAII	CATG	8 cut(s)	235, 363, 386, 616, 851, 965, 1159, 1170
CviQI	GTAC	4 cut(s)	232, 383, 563, 761
DdeI	CTNAG	4 cut(s)	32, 421, 456, 501
DraI	TTTAAA	1 cut(s)	754
DriI	GACNNNNNGTC	1 cut(s)	502
Eam1104I	CTCTTC	1 cut(s)	1049
Eam1105I	GACNNNNNGTC	1 cut(s)	502
EarI	CTCTTC	1 cut(s)	1049
EciI	GGCGGA	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	424
Eco32I	GATATC	1 cut(s)	814
Eco47I	GGWCC	1 cut(s)	496
Eco81I	CCTNAGG	1 cut(s)	456
EcoRII	CCWGG	3 cut(s)	294, 465, 744
EcoRV	GATATC	1 cut(s)	814
FaeI	CATG	8 cut(s)	238, 366, 389, 619, 854, 968, 1162, 1173
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FaqI	GGGAC	2 cut(s)	803, 991
FatI	CATG	8 cut(s)	234, 362, 385, 615, 850, 964, 1158, 1169
FbaI	TGATCA	1 cut(s)	1069
Fnu4HI	GCNGC	5 cut(s)	37, 88, 123, 549, 624
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	5 cut(s)	37, 88, 123, 549, 624
FspBI	CTAG	5 cut(s)	6, 62, 338, 525, 545
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	5 cut(s)	37, 88, 123, 549, 624
GsuI	CTGGAG	4 cut(s)	43, 138, 971, 1055
HaeIII	GGCC	2 cut(s)	342, 1104
HapII	CCGG	2 cut(s)	343, 1145
HgaI	GACGC	1 cut(s)	633
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	8 cut(s)	238, 366, 389, 619, 854, 968, 1162, 1173
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	6 cut(s)	503, 833, 870, 1087, 1141, 1155
HpaII	CCGG	2 cut(s)	343, 1145
HphI	GGTGA	5 cut(s)	119, 148, 250, 322, 593
Hpy166II	GTNNAC	4 cut(s)	400, 406, 463, 1150
Hpy188I	TCNGA	6 cut(s)	33, 440, 649, 857, 1000, 1069
Hpy8I	GTNNAC	4 cut(s)	400, 406, 463, 1150
HpyAV	CCTTC	2 cut(s)	133, 317
HpyCH4III	ACNGT	3 cut(s)	107, 601, 1181
HpyCH4IV	ACGT	2 cut(s)	402, 786
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 122, 548, 629, 1037, 1132
HpyF3I	CTNAG	4 cut(s)	32, 421, 456, 501
HpySE526I	ACGT	2 cut(s)	402, 786
Hsp92II	CATG	8 cut(s)	238, 366, 389, 619, 854, 968, 1162, 1173
HspAI	GCGC	1 cut(s)	90
Ksp22I	TGATCA	1 cut(s)	1069
LmnI	GCTCC	2 cut(s)	119, 142
Lsp1109I	GCAGC	2 cut(s)	535, 610
MaeI	CTAG	5 cut(s)	6, 62, 338, 525, 545
MaeII	ACGT	2 cut(s)	402, 786
MaeIII	GTNAC	6 cut(s)	310, 601, 608, 706, 796, 919
MbiI	CCGCTC	2 cut(s)	36, 122
MboII	GAAGA	5 cut(s)	166, 596, 773, 1066, 1103
MflI	RGATCY	2 cut(s)	28, 55
MhlI	GDGCHC	2 cut(s)	465, 1152
MluCI	AATT	6 cut(s)	412, 633, 756, 1007, 1074, 1188
MlyI	GAGTC	2 cut(s)	512, 1164
MmeI	TCCRAC	1 cut(s)	835
MroXI	GAANNNNTTC	1 cut(s)	780
MseI	TTAA	4 cut(s)	555, 753, 1077, 1201
MslI	CAYNNNNRTG	2 cut(s)	105, 491
MspI	CCGG	2 cut(s)	343, 1145
MspR9I	CCNGG	3 cut(s)	296, 467, 746
MvaI	CCWGG	3 cut(s)	296, 467, 746
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	6 cut(s)	11, 122, 548, 629, 1037, 1132
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	8 cut(s)	238, 366, 389, 619, 854, 968, 1162, 1173
NlaIV	GGNNCC	4 cut(s)	144, 328, 373, 498
NmuCI	GTSAC	6 cut(s)	310, 601, 608, 706, 796, 919
NspI	RCATGY	1 cut(s)	1173
OliI	CACNNNNGTG	1 cut(s)	105
PaeI	GCATGC	1 cut(s)	1173
PagI	TCATGA	1 cut(s)	1158
PdmI	GAANNNNTTC	1 cut(s)	780
PfeI	GAWTC	4 cut(s)	833, 870, 1087, 1141
PkrI	GCNGC	5 cut(s)	38, 89, 124, 550, 625
PleI	GAGTC	2 cut(s)	511, 1163
PpsI	GAGTC	2 cut(s)	511, 1163
Psp6I	CCWGG	3 cut(s)	294, 465, 744
PspGI	CCWGG	3 cut(s)	294, 465, 744
PspN4I	GGNNCC	4 cut(s)	144, 328, 373, 498
PspPI	GGNCC	2 cut(s)	496, 1103
PsuI	RGATCY	2 cut(s)	28, 55
RsaI	GTAC	4 cut(s)	233, 384, 564, 762
RsaNI	GTAC	4 cut(s)	232, 383, 563, 761
RseI	CAYNNNNRTG	2 cut(s)	105, 491
SaqAI	TTAA	4 cut(s)	555, 753, 1077, 1201
SatI	GCNGC	5 cut(s)	37, 88, 123, 549, 624
Sau96I	GGNCC	2 cut(s)	496, 1103
ScaI	AGTACT	1 cut(s)	564
SchI	GAGTC	2 cut(s)	512, 1164
ScrFI	CCNGG	3 cut(s)	296, 467, 746
SduI	GDGCHC	2 cut(s)	465, 1152
SetI	ASST	9 cut(s)	11, 204, 405, 427, 462, 550, 699, 715, 789
SfcI	CTRYAG	1 cut(s)	160
SinI	GGWCC	1 cut(s)	496
SmiMI	CAYNNNNRTG	2 cut(s)	105, 491
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
SpeI	ACTAGT	1 cut(s)	524
SphI	GCATGC	1 cut(s)	1173
Sse9I	AATT	6 cut(s)	412, 633, 756, 1007, 1074, 1188
SsiI	CCGC	7 cut(s)	36, 85, 88, 122, 125, 170, 308
SspI	AATATT	1 cut(s)	248
SspMI	CTAG	5 cut(s)	6, 62, 338, 525, 545
StyD4I	CCNGG	3 cut(s)	294, 465, 744
TaaI	ACNGT	3 cut(s)	107, 601, 1181
TaiI	ACGT	2 cut(s)	405, 789
TaqI	TCGA	2 cut(s)	152, 873
TasI	AATT	6 cut(s)	412, 633, 756, 1007, 1074, 1188
TatI	WGTACW	3 cut(s)	231, 562, 760
TauI	GCSGC	3 cut(s)	39, 90, 125
TfiI	GAWTC	4 cut(s)	833, 870, 1087, 1141
Tru1I	TTAA	4 cut(s)	555, 753, 1077, 1201
Tru9I	TTAA	4 cut(s)	555, 753, 1077, 1201
TscAI	CASTG	4 cut(s)	493, 610, 1038, 1137
TseFI	GTSAC	6 cut(s)	310, 601, 608, 706, 796, 919
TseI	GCWGC	2 cut(s)	548, 623
Tsp45I	GTSAC	6 cut(s)	310, 601, 608, 706, 796, 919
TspDTI	ATGAA	5 cut(s)	336, 351, 585, 647, 839
TspGWI	ACGGA	2 cut(s)	678, 1167
TspRI	CASTG	4 cut(s)	493, 610, 1038, 1137
VneI	GTGCAC	2 cut(s)	461, 1148
VpaK11BI	GGWCC	1 cut(s)	496
XceI	RCATGY	1 cut(s)	1173
XmnI	GAANNNNTTC	1 cut(s)	780
XspI	CTAG	5 cut(s)	6, 62, 338, 525, 545
ZrmI	AGTACT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.