Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8340383.1

Orthogroup ID

OG0002154

Physical Location & Seq

Genomic Coordinates Forward (+)

346 .. 942

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8340383.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atggccggaggtatagcaacaaggtggagggttctaagcggtgaagacgattgggaggatctattagaccctctccacattgatctccgccactatatcattcactgcggtgaaagggcgggagccgtagccgtggtgcacgaaccaaagtcgaagaactaccggcttcctcgatacttaaaggaacatttgttctcaaagatgggtttgcagagtggtaacccatacaagtacgtggtgaaagaatacttgtatgcaacattccctctgctatccatcgggaaatcaaattttctcggttttgttgcggttacaacagatgaaggagccaaagtgttggggaggagggacgttttgatttcttggagaggaacccagttggaacatgagtatcttgtggacgccgacaccgctttagtgtcagcttctgacattctgggatcgaacaacggactcgatcctttggtgcaccaaggttggctgtcctactacactcataaggacattctgtccccacacaatcaactacatagttgcagagatcaggtatttcatgattatattttttattctccgtctttaaattttgaaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

198

Amino Acids

22.56

Weight (kDa)

6.1

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19750 FvH4_5g19760
malus_domestica	MD04G1058700.v1.1
prunus_persica	Prupe.5G062500_v2.0.a1 Prupe.5G062600_v2.0.a1 Prupe.5G062700_v2.0.a1
pyrus_communis	pycom04g05260
rosa_chinensis	RchiOBHm_Chr7g0203651 RchiOBHm_Chr7g0203681 RchiOBHm_Chr7g0204521 RchiOBHm_Chr7g0204541
rosa_laevigata	RLG00000003452 RLG00000003453 RLG00000003512
rosa_multiflora	Rmu_co8274427.1_g000001 Rmu_co8340383.1_g000001 Rmu_sc0005354.1_g000007 Rmu_ssc0000443.1_g000023 Rmu_ssc0000443.1_g000033
rosa_roxburghii	Rroxscaffold_3G00253010 Rroxscaffold_3G00253020 Rroxscaffold_3G00253540 Rroxscaffold_3G00253610 Rroxscaffold_6G00397050 Rroxscaffold_6G00397100
rosa_rugosa	Rorug07G0078000 Rorug07G0084900 Rorug07G0085000
rosa_samantha	Rh7AG207600 Rh7AG214200 Rh7AG214300 Rh7BG206900 Rh7BG211700 Rh7BG211800 Rh7CG219900 Rh7CG227300 Rh7DG214500 Rh7DG214700 Rh7DG221800 Rh7DG222000
rosa_wichuraiana	Rw7G018100 Rw7G018570 Rw7G018580 Rw7G018590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	39, 88, 108, 119, 308, 411
AclWI	GGATC	3 cut(s)	66, 448, 452
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	289, 583
AcyI	GRCGYC	1 cut(s)	402
AfaI	GTAC	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	590
AhdI	GACNNNNNGTC	1 cut(s)	508
AleI	CACNNNNGTG	1 cut(s)	108
AloI	GAACNNNNNNTCC	2 cut(s)	176, 208
AluBI	AGCT	1 cut(s)	425
AluI	AGCT	1 cut(s)	425
Alw21I	GWGCWC	2 cut(s)	141, 471
Alw44I	GTGCAC	2 cut(s)	137, 467
AlwI	GGATC	3 cut(s)	66, 448, 452
AlwNI	CAGNNNCTG	1 cut(s)	428
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	2 cut(s)	137, 467
ApoI	RAATTY	2 cut(s)	289, 583
AsuHPI	GGTGA	3 cut(s)	53, 122, 250
BaeGI	GKGCMC	2 cut(s)	141, 471
BaeI	ACNNNNGTAYC	2 cut(s)	374, 407
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	2 cut(s)	141, 471
BccI	CCATC	2 cut(s)	196, 284
BceAI	ACGGC	2 cut(s)	110, 116
BmeRI	GACNNNNNGTC	1 cut(s)	508
BmiI	GGNNCC	3 cut(s)	124, 328, 373
BmrI	ACTGGG	1 cut(s)	370
BmuI	ACTGGG	1 cut(s)	370
BpiI	GAAGAC	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	235
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	2 cut(s)	132, 472
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bse118I	RCCGGY	1 cut(s)	162
Bse1I	ACTGG	1 cut(s)	376
BseDI	CCNNGG	2 cut(s)	132, 472
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	1 cut(s)	358
BseSI	GKGCMC	2 cut(s)	141, 471
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	141, 471
BsiSI	CCGG	2 cut(s)	6, 163
BslFI	GGGAC	2 cut(s)	362, 496
BsmFI	GGGAC	2 cut(s)	362, 496
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	141, 471
Bsp143I	GATC	5 cut(s)	58, 82, 440, 457, 541
BspACI	CCGC	6 cut(s)	39, 88, 108, 119, 308, 411
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	3 cut(s)	124, 328, 373
BspPI	GGATC	3 cut(s)	66, 448, 452
BsrFI	RCCGGY	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	376
BssAI	RCCGGY	1 cut(s)	162
BssECI	CCNNGG	2 cut(s)	132, 472
BssMI	GATC	5 cut(s)	58, 82, 440, 457, 541
BssNI	GRCGYC	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	472
BstACI	GRCGYC	1 cut(s)	402
BstBAI	YACGTR	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	35
BstDSI	CCRYGG	1 cut(s)	132
BstEII	GGTNACC	1 cut(s)	218
BstKTI	GATC	5 cut(s)	61, 85, 443, 460, 544
BstMBI	GATC	5 cut(s)	58, 82, 440, 457, 541
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstPI	GGTNACC	1 cut(s)	218
BstSLI	GKGCMC	2 cut(s)	141, 471
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	132
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	103
CaiI	CAGNNNCTG	1 cut(s)	428
CciI	TCATGA	1 cut(s)	553
Cfr10I	RCCGGY	1 cut(s)	162
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	2 cut(s)	386, 554
CviJI	RGCY	7 cut(s)	5, 125, 131, 166, 329, 425, 481
CviKI_1	RGCY	7 cut(s)	5, 125, 131, 166, 329, 425, 481
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	5 cut(s)	60, 84, 442, 459, 543
DpnII	GATC	5 cut(s)	58, 82, 440, 457, 541
DraI	TTTAAA	1 cut(s)	582
DriI	GACNNNNNGTC	1 cut(s)	508
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	508
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	472
Eco91I	GGTNACC	1 cut(s)	218
EcoO65I	GGTNACC	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	472
ErhI	CCWWGG	1 cut(s)	472
FaeI	CATG	2 cut(s)	389, 557
FaiI	YATR	9 cut(s)	14, 96, 226, 255, 387, 498, 531, 555, 561
FaqI	GGGAC	2 cut(s)	362, 496
FatI	CATG	2 cut(s)	385, 553
FauI	CCCGC	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	6, 163
HgaI	GACGC	1 cut(s)	410
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	2 cut(s)	389, 557
HinfI	GANTC	1 cut(s)	453
HpaII	CCGG	2 cut(s)	6, 163
HphI	GGTGA	3 cut(s)	53, 122, 250
Hpy166II	GTNNAC	3 cut(s)	139, 400, 469
Hpy188I	TCNGA	1 cut(s)	430
Hpy188III	TCNNGA	2 cut(s)	280, 554
Hpy8I	GTNNAC	3 cut(s)	139, 400, 469
HpyAV	CCTTC	1 cut(s)	317
HpyCH4IV	ACGT	2 cut(s)	234, 351
HpyCH4V	TGCA	5 cut(s)	139, 211, 257, 469, 537
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	2 cut(s)	234, 351
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	389, 557
Kzo9I	GATC	5 cut(s)	58, 82, 440, 457, 541
LmnI	GCTCC	2 cut(s)	122, 326
LpnPI	CCDG	5 cut(s)	19, 176, 389, 422, 530
MaeII	ACGT	2 cut(s)	234, 351
MaeIII	GTNAC	2 cut(s)	218, 310
MalI	GATC	5 cut(s)	60, 84, 442, 459, 543
MboI	GATC	5 cut(s)	58, 82, 440, 457, 541
MboII	GAAGA	2 cut(s)	56, 166
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	2 cut(s)	141, 471
MluCI	AATT	3 cut(s)	289, 583, 592
MlyI	GAGTC	1 cut(s)	447
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	8 cut(s)	21, 49, 81, 180, 276, 336, 339, 362
MseI	TTAA	3 cut(s)	179, 581, 595
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	2 cut(s)	6, 163
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeII	GATC	5 cut(s)	58, 82, 440, 457, 541
NlaIII	CATG	2 cut(s)	389, 557
NlaIV	GGNNCC	3 cut(s)	124, 328, 373
OliI	CACNNNNGTG	1 cut(s)	108
PagI	TCATGA	1 cut(s)	553
PleI	GAGTC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	447
Ppu21I	YACGTR	1 cut(s)	235
PspEI	GGTNACC	1 cut(s)	218
PspN4I	GGNNCC	3 cut(s)	124, 328, 373
PstNI	CAGNNNCTG	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	3 cut(s)	179, 581, 595
Sau3AI	GATC	5 cut(s)	58, 82, 440, 457, 541
SchI	GAGTC	1 cut(s)	447
SduI	GDGCHC	2 cut(s)	141, 471
SetI	ASST	7 cut(s)	13, 26, 237, 354, 427, 478, 549
SmiMI	CAYNNNNRTG	1 cut(s)	108
Sse9I	AATT	3 cut(s)	289, 583, 592
SsiI	CCGC	6 cut(s)	39, 88, 108, 119, 308, 411
StyI	CCWWGG	1 cut(s)	472
TaiI	ACGT	2 cut(s)	237, 354
TaqI	TCGA	4 cut(s)	152, 172, 443, 456
TasI	AATT	3 cut(s)	289, 583, 592
Tru1I	TTAA	3 cut(s)	179, 581, 595
Tru9I	TTAA	3 cut(s)	179, 581, 595
TscAI	CASTG	1 cut(s)	110
TspDTI	ATGAA	2 cut(s)	336, 542
TspGWI	ACGGA	2 cut(s)	465, 564
TspRI	CASTG	1 cut(s)	110
VneI	GTGCAC	2 cut(s)	137, 467
XapI	RAATTY	2 cut(s)	289, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.