Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002154

Physical Location & Seq

Genomic Coordinates Reverse (-)

17954157 .. 17956232

Gene Structure 2076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG211700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGGTAGCATAGCAACAAGGTGGAGGCTTCTGAGCGGCGAGAACGAGTGGGCGGGTTTATTGGATCCTCTCGATATTGATCTCCGCCGCTACATCATTCACTATGGTGAAAGGGCCGGAGCCATAGGCGATGGCTTCATCAAGGAAACAAAATCAAGCAACTGTGGACTTCCCCGATATGCAAAGAGCCAATTCTTCACCAAGGTGGGTTTGGAGAACTACAACCCTTATAAGTACGTGGTGAAGAAGTATTTGTATGCAGCAACAATGTTATCTCCCGGCAGATCGAACTGGTTGGCTTATGTTGCGGTGGCAACGGATGAGGGAAAGGAAGTGTTGGGGAGGAGGGACATTTTGATTTCATGGAGAGGAACCGTGCTGGACGAAGAGGCCGGAATTGATTTGTTGTTCAATTTAGTCTCGGCTTCTGATATTCTGGGAAGTGAGAGTGTAGCTAAGGTGCACCATGGTTGGCATTCCTATTACACTAATGTGGACCCTGTTTCTCCATACACTAAAACTAGTTGTAGAGACCAGGTTTTAGCTACAATTAGAGAAGTAGTGGACCAATACAAGGATGAGGAAATAAGCGTAACAGTCACTGGCTACAGCATGGGTGCTGCATTTGCAATCTTGAATGCAACGGACATTGTTTACAATAGATACAATGTGCCTACTGCATATCCAGATAAAGCCTGCCTTGTTACATCCATTGTGTTCGCTAGCCCTCGTCTCGGAGACGAAGGATTCAGAAAAGTATTCAGTAGTCTCGAAAACCTTCATGTCTTACGCATCACAAATCTCCACGATGTTATAACTATTCTACCGCCATCAAGCAGTTATGTTCACGTTGGAAAAGAGTTGGAAATCGACACTCTCAAATCTCCCTACTTGAAGGATGCATCGCAGTCCCTACACAATTTGGAAGTTTACCTTCATGGAGTTGCAGGAACACAAGGGATAAATGGTTTCAAATTGGAGGTTTATCGTGATCTTGCATTAGTGAACAAAAAGCTGGATGGTCTAAACGACGAACATAATGTAGTTGCTAATTGGTGGACAGAGAAGAACAAGTCTATGGTTCAAATGGATAATGGCTCCTGGGTTTTGATGGATCGTGAGAAAGATGATGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

379

Amino Acids

42.55

Weight (kDa)

5.62

Isoelectric Point (pI)

28.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	120 - 278	2.5e-26	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19750 FvH4_5g19760
malus_domestica	MD04G1058700.v1.1
prunus_persica	Prupe.5G062500_v2.0.a1 Prupe.5G062600_v2.0.a1 Prupe.5G062700_v2.0.a1
pyrus_communis	pycom04g05260
rosa_chinensis	RchiOBHm_Chr7g0203651 RchiOBHm_Chr7g0203681 RchiOBHm_Chr7g0204521 RchiOBHm_Chr7g0204541
rosa_laevigata	RLG00000003452 RLG00000003453 RLG00000003512
rosa_multiflora	Rmu_co8274427.1_g000001 Rmu_co8340383.1_g000001 Rmu_sc0005354.1_g000007 Rmu_ssc0000443.1_g000023 Rmu_ssc0000443.1_g000033
rosa_roxburghii	Rroxscaffold_3G00253010 Rroxscaffold_3G00253020 Rroxscaffold_3G00253540 Rroxscaffold_3G00253610 Rroxscaffold_6G00397050 Rroxscaffold_6G00397100
rosa_rugosa	Rorug07G0078000 Rorug07G0084900 Rorug07G0085000
rosa_samantha	Rh7AG207600 Rh7AG214200 Rh7AG214300 Rh7BG206900 Rh7BG211700 Rh7BG211800 Rh7CG219900 Rh7CG227300 Rh7DG214500 Rh7DG214700 Rh7DG221800 Rh7DG222000
rosa_wichuraiana	Rw7G018100 Rw7G018570 Rw7G018580 Rw7G018590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	231, 815
AccBSI	CCGCTC	1 cut(s)	36
AciI	CCGC	6 cut(s)	36, 53, 85, 88, 308, 827
AclWI	GGATC	3 cut(s)	59, 72, 1122
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	2 cut(s)	574, 734
AgsI	TTSAA	5 cut(s)	412, 637, 895, 973, 1085
AhlI	ACTAGT	1 cut(s)	521
AjnI	CCWGG	2 cut(s)	534, 1100
AleI	CACNNNNGTG	3 cut(s)	105, 203, 491
AluBI	AGCT	3 cut(s)	455, 545, 1015
AluI	AGCT	3 cut(s)	455, 545, 1015
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	5 cut(s)	424, 525, 732, 737, 773
Alw44I	GTGCAC	1 cut(s)	461
AlwI	GGATC	3 cut(s)	59, 72, 1122
AlwNI	CAGNNNCTG	1 cut(s)	602
AoxI	GGCC	2 cut(s)	114, 390
ApaLI	GTGCAC	1 cut(s)	461
ApeKI	GCWGC	2 cut(s)	260, 620
Asp700I	GAANNNNTTC	1 cut(s)	777
AspS9I	GGNCC	3 cut(s)	114, 496, 565
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	3 cut(s)	119, 190, 253
AsuNHI	GCTAGC	1 cut(s)	722
AvaII	GGWCC	2 cut(s)	496, 565
BaeGI	GKGCMC	1 cut(s)	465
BamHI	GGATCC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	2 cut(s)	272, 607
BccI	CCATC	4 cut(s)	125, 838, 1013, 1105
BciT130I	CCWGG	2 cut(s)	536, 1102
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	5 cut(s)	424, 525, 732, 737, 773
BcuI	ACTAGT	1 cut(s)	521
BfaI	CTAG	2 cut(s)	522, 723
BfmI	CTRYAG	1 cut(s)	607
BisI	GCNGC	4 cut(s)	37, 88, 261, 621
BlsI	GCNGC	4 cut(s)	38, 89, 262, 622
Bme1390I	CCNGG	3 cut(s)	279, 536, 1102
Bme18I	GGWCC	2 cut(s)	496, 565
BmgT120I	GGNCC	3 cut(s)	114, 496, 565
BmiI	GGNNCC	5 cut(s)	66, 121, 373, 498, 1099
BmrFI	CCNGG	3 cut(s)	279, 536, 1102
BmsI	GCATC	3 cut(s)	801, 889, 911
BmtI	GCTAGC	1 cut(s)	726
Bpu10I	CCTNAGC	1 cut(s)	456
BpuMI	CCSGG	1 cut(s)	279
BsaAI	YACGTR	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	525
BsaJI	CCNNGG	3 cut(s)	201, 466, 1101
Bsc4I	CCNNNNNNNGG	2 cut(s)	574, 734
Bse1I	ACTGG	2 cut(s)	296, 607
Bse8I	GATNNNNATC	1 cut(s)	78
BseBI	CCWGG	2 cut(s)	536, 1102
BseDI	CCNNGG	3 cut(s)	201, 466, 1101
BseGI	GGATG	5 cut(s)	325, 583, 707, 904, 1024
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	2 cut(s)	574, 734
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	2 cut(s)	296, 607
BseRI	GAGGAG	1 cut(s)	358
BseSI	GKGCMC	1 cut(s)	465
BseXI	GCAGC	2 cut(s)	272, 607
BshFI	GGCC	2 cut(s)	116, 392
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	3 cut(s)	117, 279, 393
BslFI	GGGAC	2 cut(s)	362, 895
BslI	CCNNNNNNNGG	2 cut(s)	574, 734
BsmAI	GTCTC	5 cut(s)	424, 525, 732, 737, 773
BsmBI	CGTCTC	2 cut(s)	732, 737
BsmFI	GGGAC	2 cut(s)	362, 895
BsmI	GAATGC	2 cut(s)	475, 643
BsnI	GGCC	2 cut(s)	116, 392
Bso31I	GGTCTC	1 cut(s)	525
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp143I	GATC	5 cut(s)	64, 79, 284, 991, 1114
Bsp19I	CCATGG	1 cut(s)	466
BspACI	CCGC	6 cut(s)	36, 53, 85, 88, 308, 827
BspANI	GGCC	2 cut(s)	116, 392
BspCNI	CTCAG	1 cut(s)	24
BspLI	GGNNCC	5 cut(s)	66, 121, 373, 498, 1099
BspOI	GCTAGC	1 cut(s)	726
BspPI	GGATC	3 cut(s)	59, 72, 1122
BspTNI	GGTCTC	1 cut(s)	525
BsrBI	CCGCTC	1 cut(s)	36
BsrI	ACTGG	2 cut(s)	296, 607
BssECI	CCNNGG	3 cut(s)	201, 466, 1101
BssMI	GATC	5 cut(s)	64, 79, 284, 991, 1114
BssT1I	CCWWGG	2 cut(s)	201, 466
Bst2UI	CCWGG	2 cut(s)	536, 1102
Bst4CI	ACNGT	3 cut(s)	164, 376, 598
Bst6I	CTCTTC	1 cut(s)	381
BstBAI	YACGTR	1 cut(s)	238
BstC8I	GCNNGC	2 cut(s)	697, 724
BstDEI	CTNAG	2 cut(s)	32, 456
BstDSI	CCRYGG	1 cut(s)	466
BstF5I	GGATG	5 cut(s)	325, 583, 707, 904, 1024
BstKTI	GATC	5 cut(s)	67, 82, 287, 994, 1117
BstMAI	GTCTC	5 cut(s)	424, 525, 732, 737, 773
BstMBI	GATC	5 cut(s)	64, 79, 284, 991, 1114
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 626
BstNI	CCWGG	2 cut(s)	536, 1102
BstSCI	CCNGG	3 cut(s)	277, 534, 1100
BstSFI	CTRYAG	1 cut(s)	607
BstSLI	GKGCMC	1 cut(s)	465
BstV1I	GCAGC	2 cut(s)	272, 607
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	116, 392
BtgI	CCRYGG	1 cut(s)	466
BtgZI	GCGATG	2 cut(s)	144, 888
BtsCI	GGATG	5 cut(s)	325, 583, 707, 904, 1024
BtsIMutI	CAGTG	1 cut(s)	600
Cac8I	GCNNGC	2 cut(s)	697, 724
CaiI	CAGNNNCTG	1 cut(s)	602
Cfr13I	GGNCC	3 cut(s)	114, 496, 565
CsiI	ACCWGGT	1 cut(s)	534
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	5 cut(s)	363, 467, 613, 782, 938
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	2 cut(s)	32, 456
DpnI	GATC	5 cut(s)	66, 81, 286, 993, 1116
DpnII	GATC	5 cut(s)	64, 79, 284, 991, 1114
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
EciI	GGCGGA	1 cut(s)	74
Eco130I	CCWWGG	2 cut(s)	201, 466
Eco31I	GGTCTC	1 cut(s)	525
Eco47I	GGWCC	2 cut(s)	496, 565
EcoRII	CCWGG	2 cut(s)	534, 1100
EcoT14I	CCWWGG	2 cut(s)	201, 466
EcoT22I	ATGCAT	1 cut(s)	904
ErhI	CCWWGG	2 cut(s)	201, 466
Esp3I	CGTCTC	2 cut(s)	732, 737
FaeI	CATG	5 cut(s)	366, 470, 616, 785, 941
FalI	AAGNNNNNCTT	4 cut(s)	684, 716, 918, 950
FaqI	GGGAC	2 cut(s)	362, 895
FatI	CATG	5 cut(s)	362, 466, 612, 781, 937
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	4 cut(s)	37, 88, 261, 621
FokI	GGATG	5 cut(s)	332, 590, 694, 911, 1031
Fsp4HI	GCNGC	4 cut(s)	37, 88, 261, 621
FspBI	CTAG	2 cut(s)	522, 723
GluI	GCNGC	4 cut(s)	37, 88, 261, 621
HaeIII	GGCC	2 cut(s)	116, 392
HapII	CCGG	3 cut(s)	117, 279, 393
Hin1II	CATG	5 cut(s)	366, 470, 616, 785, 941
HinfI	GANTC	1 cut(s)	747
HpaII	CCGG	3 cut(s)	117, 279, 393
HphI	GGTGA	3 cut(s)	119, 190, 253
Hpy166II	GTNNAC	9 cut(s)	167, 463, 496, 565, 655, 847, 931, 1006, 1059
Hpy188I	TCNGA	4 cut(s)	33, 430, 737, 752
Hpy188III	TCNNGA	6 cut(s)	71, 634, 686, 770, 989, 1118
Hpy8I	GTNNAC	9 cut(s)	167, 463, 496, 565, 655, 847, 931, 1006, 1059
Hpy99I	CGWCG	1 cut(s)	1034
HpyAV	CCTTC	4 cut(s)	737, 788, 889, 944
HpyCH4III	ACNGT	3 cut(s)	164, 376, 598
HpyCH4IV	ACGT	2 cut(s)	237, 849
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 626
HpyF3I	CTNAG	2 cut(s)	32, 456
HpySE526I	ACGT	2 cut(s)	237, 849
Hsp92II	CATG	5 cut(s)	366, 470, 616, 785, 941
Kzo9I	GATC	5 cut(s)	64, 79, 284, 991, 1114
LmnI	GCTCC	2 cut(s)	119, 1103
Lsp1109I	GCAGC	2 cut(s)	272, 607
LweI	GCATC	3 cut(s)	801, 889, 911
MabI	ACCWGGT	1 cut(s)	534
MaeI	CTAG	2 cut(s)	522, 723
MaeII	ACGT	2 cut(s)	237, 849
MaeIII	GTNAC	3 cut(s)	592, 598, 703
MalI	GATC	5 cut(s)	66, 81, 286, 993, 1116
MbiI	CCGCTC	1 cut(s)	36
MboI	GATC	5 cut(s)	64, 79, 284, 991, 1114
MboII	GAAGA	4 cut(s)	187, 256, 398, 1078
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	465
MluCI	AATT	8 cut(s)	191, 396, 412, 549, 919, 974, 1051, 1135
MmeI	TCCRAC	2 cut(s)	832, 843
Mph1103I	ATGCAT	1 cut(s)	904
MroXI	GAANNNNTTC	1 cut(s)	777
MslI	CAYNNNNRTG	3 cut(s)	105, 203, 491
MspI	CCGG	3 cut(s)	117, 279, 393
MspR9I	CCNGG	3 cut(s)	279, 536, 1102
Mva1269I	GAATGC	2 cut(s)	475, 643
MvaI	CCWGG	2 cut(s)	536, 1102
MwoI	GCNNNNNNNGC	2 cut(s)	305, 626
NciI	CCSGG	1 cut(s)	279
NcoI	CCATGG	1 cut(s)	466
NdeII	GATC	5 cut(s)	64, 79, 284, 991, 1114
NheI	GCTAGC	1 cut(s)	722
NlaIII	CATG	5 cut(s)	366, 470, 616, 785, 941
NlaIV	GGNNCC	5 cut(s)	66, 121, 373, 498, 1099
NmeAIII	GCCGAG	1 cut(s)	401
NmuCI	GTSAC	1 cut(s)	598
NsiI	ATGCAT	1 cut(s)	904
OliI	CACNNNNGTG	3 cut(s)	105, 203, 491
PctI	GAATGC	2 cut(s)	475, 643
PdmI	GAANNNNTTC	1 cut(s)	777
PfeI	GAWTC	1 cut(s)	747
PkrI	GCNGC	4 cut(s)	38, 89, 262, 622
Ppu21I	YACGTR	1 cut(s)	238
PsiI	TTATAA	2 cut(s)	231, 815
Psp6I	CCWGG	2 cut(s)	534, 1100
PspGI	CCWGG	2 cut(s)	534, 1100
PspN4I	GGNNCC	5 cut(s)	66, 121, 373, 498, 1099
PspPI	GGNCC	3 cut(s)	114, 496, 565
PstNI	CAGNNNCTG	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
RseI	CAYNNNNRTG	3 cut(s)	105, 203, 491
SatI	GCNGC	4 cut(s)	37, 88, 261, 621
Sau3AI	GATC	5 cut(s)	64, 79, 284, 991, 1114
Sau96I	GGNCC	3 cut(s)	114, 496, 565
ScrFI	CCNGG	3 cut(s)	279, 536, 1102
SduI	GDGCHC	1 cut(s)	465
SexAI	ACCWGGT	1 cut(s)	534
SfaNI	GCATC	3 cut(s)	801, 889, 911
SfcI	CTRYAG	1 cut(s)	607
SinI	GGWCC	2 cut(s)	496, 565
SmiMI	CAYNNNNRTG	3 cut(s)	105, 203, 491
SpeI	ACTAGT	1 cut(s)	521
Sse9I	AATT	8 cut(s)	191, 396, 412, 549, 919, 974, 1051, 1135
SsiI	CCGC	6 cut(s)	36, 53, 85, 88, 308, 827
SspMI	CTAG	2 cut(s)	522, 723
StyD4I	CCNGG	3 cut(s)	277, 534, 1100
StyI	CCWWGG	2 cut(s)	201, 466
TaaI	ACNGT	3 cut(s)	164, 376, 598
TaiI	ACGT	2 cut(s)	240, 852
TaqI	TCGA	4 cut(s)	72, 287, 771, 870
TasI	AATT	8 cut(s)	191, 396, 412, 549, 919, 974, 1051, 1135
TauI	GCSGC	2 cut(s)	39, 90
TfiI	GAWTC	1 cut(s)	747
TscAI	CASTG	1 cut(s)	607
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	2 cut(s)	260, 620
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	4 cut(s)	127, 351, 770, 926
TspGWI	ACGGA	2 cut(s)	332, 659
TspRI	CASTG	1 cut(s)	607
VneI	GTGCAC	1 cut(s)	461
VpaK11BI	GGWCC	2 cut(s)	496, 565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	777
XspI	CTAG	2 cut(s)	522, 723
Zsp2I	ATGCAT	1 cut(s)	904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.