Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002154

Physical Location & Seq

Genomic Coordinates Forward (+)

5062695 .. 5064237

Gene Structure 1543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGATACCATAGCAACAAGGTGGAGGCTTCTTGGTGGCGAAACTGATTGGGAGGGTCTACTTGACCCTCTCGACATTGATCTACGTCGCTGTATCCTTCACTATGGCGAAAGAGTTGCCACCATTGGCGACTCCTTCATCAGCGATCCAAGATCGAAGAATTGTGGACTTCCCCGTTACACAAAGGCACATTTGTTCTCTAAGGTGGGTTTGGAGAATTCTAATCCATACAAGTACACTGTGAATAAATATATATATGCAGCAACAGAATTTTTACCCGGGAAATCGATCTGGTTAGGTTATGTGGCGGTAACAACGGATGAGGGAAAGGAGGTGTTAGGGAGGAGGGACATTTTGGTTACATGGAGAGGAACTGAACTGGATGCAGAGTGGGATGTTGACTTACTGTTCGATTTAGTGTCAGCTTCTGATATTCTGGGAGAGAAGTATGATCCTAAGGTGCACCATGGTTTTCATTCCTATTACAATTCTGCCGACCCTGAATCTCCATACAGTAAAACTAGTTGTAGAGCACAGGTTTTAACTGCAATTAAAGAAGTGGTGGATCGATACAAGGATGACGAAATCAGCATAACTGTTTGTGGCCACAGCATGGGCGGTGCATTTGCAATTTTAAATGCTACAGACATAGTTTGTAATGGGTACAACAAACCTACAGACCGTCCAGATAAAGCCTGTCTTGTTACATCCATTGTGTTTGCTAGCCCTCGTCTTGGATCGATCAAGGTTTCCACAGCGTATTCTCAAGTCTTAAAAATCTTCATGTTTTGCGAGTCACAAATAGCTACGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

272

Amino Acids

30.3

Weight (kDa)

5.56

Isoelectric Point (pI)

28.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19750 FvH4_5g19760
malus_domestica	MD04G1058700.v1.1
prunus_persica	Prupe.5G062500_v2.0.a1 Prupe.5G062600_v2.0.a1 Prupe.5G062700_v2.0.a1
pyrus_communis	pycom04g05260
rosa_chinensis	RchiOBHm_Chr7g0203651 RchiOBHm_Chr7g0203681 RchiOBHm_Chr7g0204521 RchiOBHm_Chr7g0204541
rosa_laevigata	RLG00000003452 RLG00000003453 RLG00000003512
rosa_multiflora	Rmu_co8274427.1_g000001 Rmu_co8340383.1_g000001 Rmu_sc0005354.1_g000007 Rmu_ssc0000443.1_g000023 Rmu_ssc0000443.1_g000033
rosa_roxburghii	Rroxscaffold_3G00253010 Rroxscaffold_3G00253020 Rroxscaffold_3G00253540 Rroxscaffold_3G00253610 Rroxscaffold_6G00397050 Rroxscaffold_6G00397100
rosa_rugosa	Rorug07G0078000 Rorug07G0084900 Rorug07G0085000
rosa_samantha	Rh7AG207600 Rh7AG214200 Rh7AG214300 Rh7BG206900 Rh7BG211700 Rh7BG211800 Rh7CG219900 Rh7CG227300 Rh7DG214500 Rh7DG214700 Rh7DG221800 Rh7DG222000
rosa_wichuraiana	Rw7G018100 Rw7G018570 Rw7G018580 Rw7G018590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	613
AccI	GTMKAC	1 cut(s)	58
AciI	CCGC	2 cut(s)	308, 618
AclWI	GGATC	4 cut(s)	140, 446, 573, 745
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	2 cut(s)	217, 269
AfaI	GTAC	2 cut(s)	236, 665
AfiI	CCNNNNNNNGG	2 cut(s)	613, 734
AhlI	ACTAGT	1 cut(s)	521
AluBI	AGCT	2 cut(s)	425, 806
AluI	AGCT	2 cut(s)	425, 806
Alw21I	GWGCWC	2 cut(s)	465, 535
Alw44I	GTGCAC	1 cut(s)	461
AlwI	GGATC	4 cut(s)	140, 446, 573, 745
AlwNI	CAGNNNCTG	1 cut(s)	428
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	1 cut(s)	604
ApaLI	GTGCAC	1 cut(s)	461
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	2 cut(s)	217, 269
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
AsuC2I	CCSGG	2 cut(s)	279, 280
AsuNHI	GCTAGC	1 cut(s)	722
AvaI	CYCGRG	1 cut(s)	278
AxyI	CCTNAGG	1 cut(s)	456
BaeGI	GKGCMC	1 cut(s)	465
BalI	TGGCCA	1 cut(s)	606
Bbv12I	GWGCWC	2 cut(s)	465, 535
BbvI	GCAGC	1 cut(s)	272
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciVI	GTATCC	1 cut(s)	104
BcnI	CCSGG	2 cut(s)	279, 280
BcuI	ACTAGT	1 cut(s)	521
BfaI	CTAG	2 cut(s)	522, 723
BfmI	CTRYAG	2 cut(s)	642, 675
BfuI	GTATCC	1 cut(s)	104
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	2 cut(s)	279, 280
BmeT110I	CYCGRG	1 cut(s)	278
BmrFI	CCNGG	2 cut(s)	279, 280
BmsI	GCATC	1 cut(s)	373
BmtI	GCTAGC	1 cut(s)	726
BpuEI	CTTGAG	1 cut(s)	750
BpuMI	CCSGG	2 cut(s)	279, 280
Bsa29I	ATCGAT	3 cut(s)	287, 568, 740
BsaJI	CCNNGG	2 cut(s)	278, 466
Bsc4I	CCNNNNNNNGG	2 cut(s)	613, 734
Bse1I	ACTGG	1 cut(s)	384
Bse21I	CCTNAGG	1 cut(s)	456
BseCI	ATCGAT	3 cut(s)	287, 568, 740
BseDI	CCNNGG	2 cut(s)	278, 466
BseGI	GGATG	5 cut(s)	325, 388, 400, 583, 707
BseLI	CCNNNNNNNGG	2 cut(s)	613, 734
BseNI	ACTGG	1 cut(s)	384
BseRI	GAGGAG	1 cut(s)	358
BseSI	GKGCMC	1 cut(s)	465
BseXI	GCAGC	1 cut(s)	272
BshFI	GGCC	1 cut(s)	606
BshVI	ATCGAT	3 cut(s)	287, 568, 740
BsiHKAI	GWGCWC	2 cut(s)	465, 535
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	2 cut(s)	613, 734
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	606
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	465, 535
Bsp143I	GATC	8 cut(s)	79, 145, 152, 288, 451, 565, 737, 741
Bsp19I	CCATGG	1 cut(s)	466
BspACI	CCGC	2 cut(s)	308, 618
BspANI	GGCC	1 cut(s)	606
BspDI	ATCGAT	3 cut(s)	287, 568, 740
BspOI	GCTAGC	1 cut(s)	726
BspPI	GGATC	4 cut(s)	140, 446, 573, 745
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	2 cut(s)	278, 466
BssMI	GATC	8 cut(s)	79, 145, 152, 288, 451, 565, 737, 741
BssT1I	CCWWGG	1 cut(s)	466
Bst4CI	ACNGT	5 cut(s)	241, 408, 515, 598, 683
BstC8I	GCNNGC	1 cut(s)	724
BstDEI	CTNAG	2 cut(s)	201, 456
BstDSI	CCRYGG	1 cut(s)	466
BstF5I	GGATG	5 cut(s)	325, 388, 400, 583, 707
BstKTI	GATC	8 cut(s)	82, 148, 155, 291, 454, 568, 740, 744
BstMBI	GATC	8 cut(s)	79, 145, 152, 288, 451, 565, 737, 741
BstSCI	CCNGG	2 cut(s)	277, 278
BstSFI	CTRYAG	2 cut(s)	642, 675
BstSLI	GKGCMC	1 cut(s)	465
BstV1I	GCAGC	1 cut(s)	272
Bsu15I	ATCGAT	3 cut(s)	287, 568, 740
Bsu36I	CCTNAGG	1 cut(s)	456
BsuI	GTATCC	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	606
BsuTUI	ATCGAT	3 cut(s)	287, 568, 740
BtgI	CCRYGG	1 cut(s)	466
BtsCI	GGATG	5 cut(s)	325, 388, 400, 583, 707
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	724
CaiI	CAGNNNCTG	1 cut(s)	428
Cfr9I	CCCGGG	1 cut(s)	278
ClaI	ATCGAT	3 cut(s)	287, 568, 740
Csp6I	GTAC	2 cut(s)	235, 664
CviAII	CATG	4 cut(s)	363, 467, 613, 784
CviJI	RGCY	6 cut(s)	28, 425, 606, 695, 726, 806
CviKI_1	RGCY	6 cut(s)	28, 425, 606, 695, 726, 806
CviQI	GTAC	2 cut(s)	235, 664
DdeI	CTNAG	2 cut(s)	201, 456
DpnI	GATC	8 cut(s)	81, 147, 154, 290, 453, 567, 739, 743
DpnII	GATC	8 cut(s)	79, 145, 152, 288, 451, 565, 737, 741
DraI	TTTAAA	1 cut(s)	636
EaeI	YGGCCR	1 cut(s)	604
Eco130I	CCWWGG	1 cut(s)	466
Eco81I	CCTNAGG	1 cut(s)	456
Eco88I	CYCGRG	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	466
FaeI	CATG	4 cut(s)	366, 470, 616, 787
FalI	AAGNNNNNCTT	2 cut(s)	684, 716
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	4 cut(s)	362, 466, 612, 783
FblI	GTMKAC	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	5 cut(s)	332, 395, 407, 590, 694
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	2 cut(s)	522, 723
GluI	GCNGC	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	606
HapII	CCGG	1 cut(s)	279
Hin1II	CATG	4 cut(s)	366, 470, 616, 787
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	3 cut(s)	131, 503, 794
HpaII	CCGG	1 cut(s)	279
Hpy166II	GTNNAC	5 cut(s)	59, 167, 237, 400, 463
Hpy188I	TCNGA	1 cut(s)	430
Hpy188III	TCNNGA	2 cut(s)	71, 686
Hpy8I	GTNNAC	5 cut(s)	59, 167, 237, 400, 463
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	2 cut(s)	107, 145
HpyCH4III	ACNGT	5 cut(s)	241, 408, 515, 598, 683
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	6 cut(s)	260, 386, 463, 548, 623, 629
HpyF3I	CTNAG	2 cut(s)	201, 456
HpySE526I	ACGT	1 cut(s)	85
Hsp92II	CATG	4 cut(s)	366, 470, 616, 787
Kzo9I	GATC	8 cut(s)	79, 145, 152, 288, 451, 565, 737, 741
LpnPI	CCDG	8 cut(s)	277, 292, 365, 422, 513, 521, 699, 709
Lsp1109I	GCAGC	1 cut(s)	272
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	2 cut(s)	522, 723
MaeII	ACGT	1 cut(s)	85
MaeIII	GTNAC	5 cut(s)	176, 310, 358, 703, 795
MalI	GATC	8 cut(s)	81, 147, 154, 290, 453, 567, 739, 743
MboI	GATC	8 cut(s)	79, 145, 152, 288, 451, 565, 737, 741
MboII	GAAGA	2 cut(s)	169, 772
MhlI	GDGCHC	2 cut(s)	465, 535
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	6 cut(s)	160, 217, 269, 487, 549, 630
MluNI	TGGCCA	1 cut(s)	606
MlyI	GAGTC	2 cut(s)	125, 803
MnlI	CCTC	9 cut(s)	18, 46, 78, 316, 325, 336, 339, 362, 738
Mox20I	TGGCCA	1 cut(s)	606
MscI	TGGCCA	1 cut(s)	606
MseI	TTAA	4 cut(s)	542, 552, 635, 773
Msp20I	TGGCCA	1 cut(s)	606
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	2 cut(s)	279, 280
NciI	CCSGG	2 cut(s)	279, 280
NcoI	CCATGG	1 cut(s)	466
NdeII	GATC	8 cut(s)	79, 145, 152, 288, 451, 565, 737, 741
NheI	GCTAGC	1 cut(s)	722
NlaIII	CATG	4 cut(s)	366, 470, 616, 787
NmuCI	GTSAC	1 cut(s)	795
PfeI	GAWTC	1 cut(s)	503
PflMI	CCANNNNNTGG	1 cut(s)	613
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	2 cut(s)	125, 802
PpsI	GAGTC	2 cut(s)	125, 802
PstNI	CAGNNNCTG	1 cut(s)	428
RsaI	GTAC	2 cut(s)	236, 665
RsaNI	GTAC	2 cut(s)	235, 664
SaqAI	TTAA	4 cut(s)	542, 552, 635, 773
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	8 cut(s)	79, 145, 152, 288, 451, 565, 737, 741
SchI	GAGTC	2 cut(s)	125, 803
ScrFI	CCNGG	2 cut(s)	279, 280
SduI	GDGCHC	2 cut(s)	465, 535
SfaNI	GCATC	1 cut(s)	373
SfcI	CTRYAG	2 cut(s)	642, 675
SmaI	CCCGGG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	765
SmoI	CTYRAG	1 cut(s)	765
SpeI	ACTAGT	1 cut(s)	521
Sse9I	AATT	6 cut(s)	160, 217, 269, 487, 549, 630
SsiI	CCGC	2 cut(s)	308, 618
SspMI	CTAG	2 cut(s)	522, 723
StyD4I	CCNGG	2 cut(s)	277, 278
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	5 cut(s)	241, 408, 515, 598, 683
TaiI	ACGT	1 cut(s)	88
TaqI	TCGA	6 cut(s)	72, 155, 287, 411, 568, 740
TasI	AATT	6 cut(s)	160, 217, 269, 487, 549, 630
TatI	WGTACW	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	503
Tru1I	TTAA	4 cut(s)	542, 552, 635, 773
Tru9I	TTAA	4 cut(s)	542, 552, 635, 773
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	795
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	795
TspDTI	ATGAA	3 cut(s)	127, 464, 772
TspGWI	ACGGA	1 cut(s)	332
TspMI	CCCGGG	1 cut(s)	278
TspRI	CASTG	1 cut(s)	244
Van91I	CCANNNNNTGG	1 cut(s)	613
VneI	GTGCAC	1 cut(s)	461
XapI	RAATTY	2 cut(s)	217, 269
XmaI	CCCGGG	1 cut(s)	278
XmiI	GTMKAC	1 cut(s)	58
XspI	CTAG	2 cut(s)	522, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.