Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002154

Physical Location & Seq

Genomic Coordinates Forward (+)

18758180 .. 18759565

Gene Structure 1386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00397100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCCGGAGGTATAGCAACAAGGTGGAGGGTTCTAAGCGGCGAAGCCGAGTGGGAGGGTCTACTAGACCCTCTCAACATTGATCTCCGCCACTATATCATTCACTACGGTGAAAGGGCGGGAGCCGTAGCCGTGGTGAACGAACCAAAGTCGAAGAACTACCGACTTCCTCGATACTTGAAGGAACATTTGTTCTCAAGGGTGGATGAAGGAACCAAAGTGTTGGGGAGGAGGGACGTTTTGATTTCTTGGAGAGGAACCCAGTTGGAACATGAGAAGCTTGTGGACGCCGACATCGCTTTAGTTTCAGCTTCTGACATTCTGAGATCGAATAACGGACTCAATCCTTTGGTGCACCAAGGTTGGCTGTCCTACTACACTCATAAGGACATTCTGTCCCCACACAATCAACTACGTAGTTGCAGAGATCAGGTTCTAGCTGCACTTAAATCAGTACTAGAAGAATACAAGGATGAAGAAATCAGCATTACTGTCACTGGTCACAGCATGGGTGCTGCAATGGCAACTTTAAACGCAACAGATATTGTCTGTAACGGACACAACAAACCCACAGATCAATCGGACAAGCTGATTCCTGTGACAGCAATTGTGTTTGCCAGCCCCCGACTAGGCGATGAGGGATTGGAGAAGGTGTTTTCTGGTCTTGAAAACCTTCACGTCTTGCGTGTCACTAATGACCAAGATATTGTTCCTAAATTACCATATTTGGATGGTAAATATGTTCATGTTGGAAAAGAGTTGAGAATAGACAGTCTCAAGTCGACCTACTTGAAGGTTATCCCTGAATCAGATAACGTAGGAAGGCTTGGCAGTTTGCACGATCTGGAGGTCTACTTGCATGGTGTTGCAGGGACACAGGGAATCGAAAGTAATGATTTTAAATTGGAAGTGAATCGTGATCTCGCACTGGTAAACAAATATATTGACCTTCTGAAGGACGAACATAAGGTAGTTGGTAGCTGGTGGACTGAGAAGAACAAGTCTATGATTCAAATGGATAATGGCTCTTGGGTCTTGGATGATGGTGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

351

Amino Acids

39.32

Weight (kDa)

5.7

Isoelectric Point (pI)

28.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	82 - 243	2e-31	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19750 FvH4_5g19760
malus_domestica	MD04G1058700.v1.1
prunus_persica	Prupe.5G062500_v2.0.a1 Prupe.5G062600_v2.0.a1 Prupe.5G062700_v2.0.a1
pyrus_communis	pycom04g05260
rosa_chinensis	RchiOBHm_Chr7g0203651 RchiOBHm_Chr7g0203681 RchiOBHm_Chr7g0204521 RchiOBHm_Chr7g0204541
rosa_laevigata	RLG00000003452 RLG00000003453 RLG00000003512
rosa_multiflora	Rmu_co8274427.1_g000001 Rmu_co8340383.1_g000001 Rmu_sc0005354.1_g000007 Rmu_ssc0000443.1_g000023 Rmu_ssc0000443.1_g000033
rosa_roxburghii	Rroxscaffold_3G00253010 Rroxscaffold_3G00253020 Rroxscaffold_3G00253540 Rroxscaffold_3G00253610 Rroxscaffold_6G00397050 Rroxscaffold_6G00397100
rosa_rugosa	Rorug07G0078000 Rorug07G0084900 Rorug07G0085000
rosa_samantha	Rh7AG207600 Rh7AG214200 Rh7AG214300 Rh7BG206900 Rh7BG211700 Rh7BG211800 Rh7CG219900 Rh7CG227300 Rh7DG214500 Rh7DG214700 Rh7DG221800 Rh7DG222000
rosa_wichuraiana	Rw7G018100 Rw7G018570 Rw7G018580 Rw7G018590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	61, 782, 852
AciI	CCGC	3 cut(s)	39, 88, 119
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	974
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	1 cut(s)	456
AfiI	CCNNNNNNNGG	2 cut(s)	629, 955
AgsI	TTSAA	4 cut(s)	181, 668, 793, 1013
AhdI	GACNNNNNGTC	1 cut(s)	394
AjiI	CACGTC	1 cut(s)	679
AjuI	GAANNNNNNNTTGG	2 cut(s)	693, 725
AleI	CACNNNNGTG	1 cut(s)	108
AloI	GAACNNNNNNTCC	2 cut(s)	176, 208
AluBI	AGCT	5 cut(s)	280, 311, 440, 589, 981
AluI	AGCT	5 cut(s)	280, 311, 440, 589, 981
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	779
Alw44I	GTGCAC	1 cut(s)	353
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	353
ApeKI	GCWGC	2 cut(s)	440, 515
Asp700I	GAANNNNTTC	1 cut(s)	672
AsuHPI	GGTGA	2 cut(s)	122, 148
BaeGI	GKGCMC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	427, 502
BccI	CCATC	2 cut(s)	725, 1037
BceAI	ACGGC	2 cut(s)	110, 116
BcoDI	GTCTC	1 cut(s)	779
BfaI	CTAG	4 cut(s)	65, 437, 458, 629
BisI	GCNGC	3 cut(s)	40, 441, 516
BlsI	GCNGC	3 cut(s)	41, 442, 517
BmcAI	AGTACT	1 cut(s)	456
BmeRI	GACNNNNNGTC	1 cut(s)	394
BmgBI	CACGTC	1 cut(s)	679
BmiI	GGNNCC	3 cut(s)	124, 214, 259
BmrI	ACTGGG	1 cut(s)	256
BmuI	ACTGGG	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	866
BpuEI	CTTGAG	2 cut(s)	181, 761
BsaAI	YACGTR	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	132, 358
BsaXI	ACNNNNNCTCC	2 cut(s)	638, 668
Bsc4I	CCNNNNNNNGG	2 cut(s)	629, 955
Bse1I	ACTGG	3 cut(s)	262, 502, 933
Bse3DI	GCAATG	1 cut(s)	525
BseDI	CCNNGG	2 cut(s)	132, 358
BseGI	GGATG	4 cut(s)	211, 478, 736, 1045
BseLI	CCNNNNNNNGG	2 cut(s)	629, 955
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	2 cut(s)	314, 981
BseNI	ACTGG	3 cut(s)	262, 502, 933
BseRI	GAGGAG	1 cut(s)	244
BseSI	GKGCMC	1 cut(s)	357
BseXI	GCAGC	2 cut(s)	427, 502
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	3 cut(s)	248, 382, 886
BslI	CCNNNNNNNGG	2 cut(s)	629, 955
BsmAI	GTCTC	1 cut(s)	779
BsmFI	GGGAC	3 cut(s)	248, 382, 886
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	6 cut(s)	82, 326, 427, 574, 841, 919
BspACI	CCGC	3 cut(s)	39, 88, 119
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	315, 982
BspLI	GGNNCC	3 cut(s)	124, 214, 259
BsrDI	GCAATG	1 cut(s)	525
BsrI	ACTGG	3 cut(s)	262, 502, 933
BssECI	CCNNGG	2 cut(s)	132, 358
BssMI	GATC	6 cut(s)	82, 326, 427, 574, 841, 919
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	358
Bst4CI	ACNGT	3 cut(s)	110, 493, 773
BstACI	GRCGYC	1 cut(s)	288
BstBAI	YACGTR	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	619
BstDEI	CTNAG	3 cut(s)	35, 323, 990
BstDSI	CCRYGG	1 cut(s)	132
BstENI	CCTNNNNNAGG	1 cut(s)	953
BstF5I	GGATG	4 cut(s)	211, 478, 736, 1045
BstKTI	GATC	6 cut(s)	85, 329, 430, 577, 844, 922
BstMAI	GTCTC	1 cut(s)	779
BstMBI	GATC	6 cut(s)	82, 326, 427, 574, 841, 919
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 521
BstSLI	GKGCMC	1 cut(s)	357
BstSNI	TACGTA	1 cut(s)	416
BstV1I	GCAGC	2 cut(s)	427, 502
BstXI	CCANNNNNNTGG	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	132
BtgZI	GCGATG	2 cut(s)	280, 648
BtrI	CACGTC	1 cut(s)	679
BtsCI	GGATG	4 cut(s)	211, 478, 736, 1045
BtsIMutI	CAGTG	2 cut(s)	495, 926
Cac8I	GCNNGC	1 cut(s)	619
CaiI	CAGNNNCTG	1 cut(s)	314
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	455
CviAII	CATG	4 cut(s)	272, 508, 746, 860
CviQI	GTAC	1 cut(s)	455
DdeI	CTNAG	3 cut(s)	35, 323, 990
DpnI	GATC	6 cut(s)	84, 328, 429, 576, 843, 921
DpnII	GATC	6 cut(s)	82, 326, 427, 574, 841, 919
DraI	TTTAAA	2 cut(s)	531, 901
DriI	GACNNNNNGTC	1 cut(s)	394
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	394
EciI	GGCGGA	1 cut(s)	77
Eco105I	TACGTA	1 cut(s)	416
Eco130I	CCWWGG	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	974
EcoNI	CCTNNNNNAGG	1 cut(s)	953
EcoT14I	CCWWGG	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	358
FaeI	CATG	4 cut(s)	275, 511, 749, 863
FaqI	GGGAC	3 cut(s)	248, 382, 886
FatI	CATG	4 cut(s)	271, 507, 745, 859
FauI	CCCGC	1 cut(s)	112
FblI	GTMKAC	3 cut(s)	61, 782, 852
Fnu4HI	GCNGC	3 cut(s)	40, 441, 516
FokI	GGATG	4 cut(s)	218, 485, 743, 1052
Fsp4HI	GCNGC	3 cut(s)	40, 441, 516
FspBI	CTAG	4 cut(s)	65, 437, 458, 629
GluI	GCNGC	3 cut(s)	40, 441, 516
GsuI	CTGGAG	1 cut(s)	866
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	6
HgaI	GACGC	1 cut(s)	296
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	4 cut(s)	275, 511, 749, 863
HincII	GTYRAC	1 cut(s)	783
HindII	GTYRAC	1 cut(s)	783
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	7 cut(s)	339, 592, 806, 882, 913, 1009, 1049
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	2 cut(s)	122, 148
Hpy166II	GTNNAC	8 cut(s)	62, 139, 286, 355, 783, 853, 934, 987
Hpy188I	TCNGA	5 cut(s)	316, 324, 583, 811, 954
Hpy188III	TCNNGA	4 cut(s)	665, 845, 917, 1053
Hpy8I	GTNNAC	8 cut(s)	62, 139, 286, 355, 783, 853, 934, 987
HpyAV	CCTTC	8 cut(s)	175, 203, 643, 683, 787, 816, 949, 959
HpyCH4III	ACNGT	3 cut(s)	110, 493, 773
HpyCH4IV	ACGT	4 cut(s)	237, 415, 678, 816
HpyCH4V	TGCA	7 cut(s)	355, 423, 443, 518, 838, 859, 869
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 521
HpyF3I	CTNAG	3 cut(s)	35, 323, 990
HpySE526I	ACGT	4 cut(s)	237, 415, 678, 816
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	4 cut(s)	275, 511, 749, 863
Kzo9I	GATC	6 cut(s)	82, 326, 427, 574, 841, 919
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	2 cut(s)	427, 502
MaeI	CTAG	4 cut(s)	65, 437, 458, 629
MaeII	ACGT	4 cut(s)	237, 415, 678, 816
MaeIII	GTNAC	5 cut(s)	493, 500, 551, 598, 688
MalI	GATC	6 cut(s)	84, 328, 429, 576, 843, 921
MboI	GATC	6 cut(s)	82, 326, 427, 574, 841, 919
MboII	GAAGA	4 cut(s)	166, 473, 488, 1006
MfeI	CAATTG	1 cut(s)	606
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	3 cut(s)	606, 716, 902
MlyI	GAGTC	1 cut(s)	333
MmeI	TCCRAC	2 cut(s)	246, 730
MnlI	CCTC	9 cut(s)	21, 49, 81, 180, 222, 225, 248, 631, 841
MroXI	GAANNNNTTC	1 cut(s)	672
MseI	TTAA	3 cut(s)	447, 530, 900
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	1 cut(s)	6
MunI	CAATTG	1 cut(s)	606
MwoI	GCNNNNNNNGC	2 cut(s)	296, 521
NdeII	GATC	6 cut(s)	82, 326, 427, 574, 841, 919
NlaIII	CATG	4 cut(s)	275, 511, 749, 863
NlaIV	GGNNCC	3 cut(s)	124, 214, 259
NmeAIII	GCCGAG	1 cut(s)	73
NmuCI	GTSAC	4 cut(s)	493, 500, 598, 688
OliI	CACNNNNGTG	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	5 cut(s)	592, 806, 882, 913, 1009
PkrI	GCNGC	3 cut(s)	41, 442, 517
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
Ppu21I	YACGTR	1 cut(s)	416
PspN4I	GGNNCC	3 cut(s)	124, 214, 259
PstNI	CAGNNNCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
RseI	CAYNNNNRTG	1 cut(s)	108
SalI	GTCGAC	1 cut(s)	781
SaqAI	TTAA	3 cut(s)	447, 530, 900
SatI	GCNGC	3 cut(s)	40, 441, 516
Sau3AI	GATC	6 cut(s)	82, 326, 427, 574, 841, 919
ScaI	AGTACT	1 cut(s)	456
SchI	GAGTC	1 cut(s)	333
SduI	GDGCHC	1 cut(s)	357
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	2 cut(s)	196, 776
SmoI	CTYRAG	2 cut(s)	196, 776
SnaBI	TACGTA	1 cut(s)	416
Sse9I	AATT	3 cut(s)	606, 716, 902
SsiI	CCGC	3 cut(s)	39, 88, 119
SspMI	CTAG	4 cut(s)	65, 437, 458, 629
StyI	CCWWGG	1 cut(s)	358
TaaI	ACNGT	3 cut(s)	110, 493, 773
TaiI	ACGT	4 cut(s)	240, 418, 681, 819
TaqI	TCGA	5 cut(s)	152, 172, 329, 782, 885
TasI	AATT	3 cut(s)	606, 716, 902
TatI	WGTACW	1 cut(s)	454
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	5 cut(s)	592, 806, 882, 913, 1009
Tru1I	TTAA	3 cut(s)	447, 530, 900
Tru9I	TTAA	3 cut(s)	447, 530, 900
TscAI	CASTG	2 cut(s)	502, 933
TseFI	GTSAC	4 cut(s)	493, 500, 598, 688
TseI	GCWGC	2 cut(s)	440, 515
Tsp45I	GTSAC	4 cut(s)	493, 500, 598, 688
TspDTI	ATGAA	3 cut(s)	222, 489, 734
TspGWI	ACGGA	2 cut(s)	351, 570
TspRI	CASTG	2 cut(s)	502, 933
VneI	GTGCAC	1 cut(s)	353
XagI	CCTNNNNNAGG	1 cut(s)	953
XmiI	GTMKAC	3 cut(s)	61, 782, 852
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	4 cut(s)	65, 437, 458, 629
ZrmI	AGTACT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.