Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8274427.1

Orthogroup ID

OG0002154

Physical Location & Seq

Genomic Coordinates Forward (+)

116 .. 751

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8274427.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgtctcaggctctagctgcacttaaagaagtacttgatgaatacaagggtgaagaaatcagcattactgtcactgggtacagcatgggtgctgcactcgcaattctaaatgcgtctgatattgttcataacggatacaataaaatgacagatcaaccaaataaggtcattcctgtcacagctattgtgtttgcctgccctcgtcttggaaaccagggttttaaaattgtattttctggtcttgaaaatcttcacgtcttgcgtgtcacaaatgaccaagatatcgtccctaaagcaccagaatcggtggattatgttcatgtcggaaaagagttgagaatcgacactctcaagtcgccgttcttgaaagttattcctgatattaatgtcacagaaaaacttatccatttgcactctctggaggcttacttgcatggagttgcagggacacaggggatcaaaggttctgatttcaaattggaagttgatcgtgatctggcactggtaaacaagtatattgatggcgtgaaggatgaacataatatagttgctcagtggtggactgagaagaataagtctatgatccaaatggatgatggctcttgggtgttggatgatcacgaggaagatgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

211

Amino Acids

23.48

Weight (kDa)

4.98

Isoelectric Point (pI)

24.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19750 FvH4_5g19760
malus_domestica	MD04G1058700.v1.1
prunus_persica	Prupe.5G062500_v2.0.a1 Prupe.5G062600_v2.0.a1 Prupe.5G062700_v2.0.a1
pyrus_communis	pycom04g05260
rosa_chinensis	RchiOBHm_Chr7g0203651 RchiOBHm_Chr7g0203681 RchiOBHm_Chr7g0204521 RchiOBHm_Chr7g0204541
rosa_laevigata	RLG00000003452 RLG00000003453 RLG00000003512
rosa_multiflora	Rmu_co8274427.1_g000001 Rmu_co8340383.1_g000001 Rmu_sc0005354.1_g000007 Rmu_ssc0000443.1_g000023 Rmu_ssc0000443.1_g000033
rosa_roxburghii	Rroxscaffold_3G00253010 Rroxscaffold_3G00253020 Rroxscaffold_3G00253540 Rroxscaffold_3G00253610 Rroxscaffold_6G00397050 Rroxscaffold_6G00397100
rosa_rugosa	Rorug07G0078000 Rorug07G0084900 Rorug07G0085000
rosa_samantha	Rh7AG207600 Rh7AG214200 Rh7AG214300 Rh7BG206900 Rh7BG211700 Rh7BG211800 Rh7CG219900 Rh7CG227300 Rh7DG214500 Rh7DG214700 Rh7DG221800 Rh7DG222000
rosa_wichuraiana	Rw7G018100 Rw7G018570 Rw7G018580 Rw7G018590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	464, 577
AfaI	GTAC	2 cut(s)	33, 80
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	3 cut(s)	245, 367, 475
AjiI	CACGTC	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	213
AloI	GAACNNNNNNTCC	2 cut(s)	448, 480
AluBI	AGCT	2 cut(s)	17, 182
AluI	AGCT	2 cut(s)	17, 182
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	464, 577
ApeKI	GCWGC	2 cut(s)	17, 92
AseI	ATTAAT	1 cut(s)	384
Asp700I	GAANNNNTTC	1 cut(s)	249
AsuHPI	GGTGA	1 cut(s)	62
BauI	CACGAG	1 cut(s)	620
BbvI	GCAGC	2 cut(s)	4, 79
BccI	CCATC	2 cut(s)	515, 590
BceAI	ACGGC	1 cut(s)	343
BcgI	CGANNNNNNTGC	2 cut(s)	285, 319
BciT130I	CCWGG	1 cut(s)	215
BciVI	GTATCC	1 cut(s)	128
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	14
BfuI	GTATCC	1 cut(s)	128
BisI	GCNGC	2 cut(s)	18, 93
BlsI	GCNGC	2 cut(s)	19, 94
BmcAI	AGTACT	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	215
BmgBI	CACGTC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	215
BmrI	ACTGGG	1 cut(s)	84
BmuI	ACTGGG	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	440
BpuEI	CTTGAG	1 cut(s)	335
BsaBI	GATNNNNATC	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	2 cut(s)	79, 507
Bse8I	GATNNNNATC	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	214
BseGI	GGATG	3 cut(s)	538, 598, 619
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	3 cut(s)	20, 555, 566
BseNI	ACTGG	2 cut(s)	79, 507
BseXI	GCAGC	2 cut(s)	4, 79
BsgI	GTGCAG	1 cut(s)	78
BslFI	GGGAC	2 cut(s)	272, 460
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	2 cut(s)	272, 460
Bsp143I	GATC	6 cut(s)	151, 456, 487, 493, 582, 616
BspCNI	CTCAG	3 cut(s)	19, 556, 565
BspPI	GGATC	2 cut(s)	464, 577
BsrI	ACTGG	2 cut(s)	79, 507
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	6 cut(s)	151, 456, 487, 493, 582, 616
BssSI	CACGAG	1 cut(s)	620
Bst2BI	CACGAG	1 cut(s)	620
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	3 cut(s)	6, 552, 564
BstF5I	GGATG	3 cut(s)	538, 598, 619
BstKTI	GATC	6 cut(s)	154, 459, 490, 496, 585, 619
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	6 cut(s)	151, 456, 487, 493, 582, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 98
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	213
BstV1I	GCAGC	2 cut(s)	4, 79
BsuI	GTATCC	1 cut(s)	128
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	3 cut(s)	538, 598, 619
BtsIMutI	CAGTG	3 cut(s)	72, 500, 560
Cac8I	GCNNGC	1 cut(s)	196
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	2 cut(s)	32, 79
CviAII	CATG	3 cut(s)	85, 320, 434
CviJI	RGCY	5 cut(s)	11, 17, 182, 425, 600
CviKI_1	RGCY	5 cut(s)	11, 17, 182, 425, 600
CviQI	GTAC	2 cut(s)	32, 79
DdeI	CTNAG	3 cut(s)	6, 552, 564
DpnI	GATC	6 cut(s)	153, 458, 489, 495, 584, 618
DpnII	GATC	6 cut(s)	151, 456, 487, 493, 582, 616
DraI	TTTAAA	1 cut(s)	223
Eco32I	GATATC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	213
EcoRV	GATATC	1 cut(s)	283
FaeI	CATG	3 cut(s)	88, 323, 437
FaiI	YATR	9 cut(s)	86, 129, 315, 321, 435, 516, 540, 545, 581
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FaqI	GGGAC	2 cut(s)	272, 460
FatI	CATG	3 cut(s)	84, 319, 433
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	2 cut(s)	18, 93
FokI	GGATG	3 cut(s)	545, 605, 626
Fsp4HI	GCNGC	2 cut(s)	18, 93
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	2 cut(s)	18, 93
GsuI	CTGGAG	1 cut(s)	440
HgaI	GACGC	1 cut(s)	102
Hin1II	CATG	3 cut(s)	88, 323, 437
HinfI	GANTC	2 cut(s)	302, 339
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	2 cut(s)	508, 561
Hpy188I	TCNGA	3 cut(s)	118, 326, 469
Hpy188III	TCNNGA	6 cut(s)	242, 364, 377, 419, 491, 620
Hpy8I	GTNNAC	2 cut(s)	508, 561
HpyAV	CCTTC	1 cut(s)	523
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	5 cut(s)	20, 95, 412, 433, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 98
HpyF3I	CTNAG	3 cut(s)	6, 552, 564
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	3 cut(s)	88, 323, 437
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	6 cut(s)	151, 456, 487, 493, 582, 616
Lsp1109I	GCAGC	2 cut(s)	4, 79
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	4 cut(s)	70, 175, 265, 388
MalI	GATC	6 cut(s)	153, 458, 489, 495, 584, 618
MboI	GATC	6 cut(s)	151, 456, 487, 493, 582, 616
MboII	GAAGA	3 cut(s)	65, 242, 580
MluCI	AATT	3 cut(s)	102, 225, 476
MmeI	TCCRAC	2 cut(s)	304, 591
MnlI	CCTC	3 cut(s)	210, 415, 616
MroXI	GAANNNNTTC	1 cut(s)	249
MseI	TTAA	3 cut(s)	24, 222, 384
MspR9I	CCNGG	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	17, 98
NdeII	GATC	6 cut(s)	151, 456, 487, 493, 582, 616
NlaIII	CATG	3 cut(s)	88, 323, 437
NmuCI	GTSAC	4 cut(s)	70, 175, 265, 388
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	302, 339
PkrI	GCNGC	2 cut(s)	19, 94
PshBI	ATTAAT	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
RsaI	GTAC	2 cut(s)	33, 80
RsaNI	GTAC	2 cut(s)	32, 79
SaqAI	TTAA	3 cut(s)	24, 222, 384
SatI	GCNGC	2 cut(s)	18, 93
Sau3AI	GATC	6 cut(s)	151, 456, 487, 493, 582, 616
ScaI	AGTACT	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	215
SetI	ASST	5 cut(s)	19, 168, 184, 258, 466
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	3 cut(s)	102, 225, 476
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	342
TasI	AATT	3 cut(s)	102, 225, 476
TatI	WGTACW	1 cut(s)	31
TfiI	GAWTC	2 cut(s)	302, 339
Tru1I	TTAA	3 cut(s)	24, 222, 384
Tru9I	TTAA	3 cut(s)	24, 222, 384
TscAI	CASTG	3 cut(s)	79, 507, 560
TseFI	GTSAC	4 cut(s)	70, 175, 265, 388
TseI	GCWGC	2 cut(s)	17, 92
Tsp45I	GTSAC	4 cut(s)	70, 175, 265, 388
TspDTI	ATGAA	4 cut(s)	54, 116, 308, 549
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	3 cut(s)	79, 507, 560
VspI	ATTAAT	1 cut(s)	384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	1 cut(s)	14
ZrmI	AGTACT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.