Rw7G018580

phospholipase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
20135872 .. 20137318
1447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G018580.1

Sequence Viewer

Length: 1233 bp
ATGCAGGGCACTATAAATACAAGAGCCGGCGATGGCAGAAGAAACTCAGAAGAAGAACAAGAAACTCAGTCCTTTCAAGTTTTGTTTACTCGAGCACGAAAACTTACGGCGATGGCTAGCTTTGCAGAAAACTGGAGGGATCTGAGCGGCAAGAACGACTGGGAGGGTCTACTAGACCCTCTCGACATCAATCTCCGCCGCTATATCATTCACTATGGTGAAAGGGCTGGAGCGGCGGTTTCCGTGGTGAAGGAGCCAAACACATTTGTTCGCAAAGGTGGGTTTGGAGAGTACAAGTACATGGTGAAAAAATATTTTTATGCAACTCATCTGGAACTTTCGCCCAAGAAATCAAACTTCCTGGGTTTTGTTGCGGTGACAATTGATGAAGGAACCAAAGTGCTAGGCCGGAGGGATGTCTTGATTTCATGGAGAGGAACCACATTGGTACATGAGTTGCTTGTTGACGCGAACTTTAATTTGGTCTCAGCTTCTCACATTCTGGGAGAGGAGAATGATCCTAAGGTGCACCAGGGTTGGCTTTCCTATTACACTGATATGGACCCTGAGTCCTCACACAATCAACTTACTAGTTCCAGAGATCAGGCTCTAGCTGCACTTAAAGAAGTACTTGATGAATACAAGGGTGAAGAAATCAGCATTACTGTCACTGGGTACAGCATGGGTGCTGCACTCGCAATTCTAAATGCGTCTGATATTGTTCATAACGGATACAATAAAATGACAGATCAACCAAATAAGGTCATTCCTGTCACAGCTATTGTGTTTGCCTGCCCTCGTCTTGGAAACCAGGGTTTTAAAATTGTATTTTCTGGTCTTGAAAATCTTCACGTCTTGCGTGTCACAAATGACCAAGATATCGTCCCTAAAGCACCAGAATCGGTGGATTATGTTCATGTCGGAAAAGAGTTGAGAATCGACACTCTCAAGTCGCCGTTCTTGAAAGTTATTCCTGATACTAATGTCACAGAAAAACTTATCCATTTGCACTCTCTGGAGGCTTACTTGCATGGAGTTGCAGGGACACAGGGGATCAAAGGTTCTGATTTCAAATTGGAAGTTGATCGTGATCTGGCACTGGTAAACAAGTATATTGATGGCGTGAAGGATGAACATAATATAGTTGCTCAGTGGTGGACTGAGAAGAATAAGTCTATGATCCAAATGGATGATGGCTCTTGGGTGTTGGATGATCACGAGGAAGATGAATAG

Protein Analysis

410

Amino Acids

46.11

Weight (kDa)

5.44

Isoelectric Point (pI)

30.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 142 - 300 1.2e-30 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 147, 233
AccI GTMKAC 1 cut(s) 169
AccII CGCG 1 cut(s) 470
AciI CCGC 6 cut(s) 147, 196, 199, 233, 236, 374
AclWI GGATC 4 cut(s) 147, 512, 1061, 1174
AfaI GTAC 5 cut(s) 293, 299, 450, 630, 677
AfiI CCNNNNNNNGG 1 cut(s) 803
AgsI TTSAA 4 cut(s) 77, 842, 964, 1072
AhdI GACNNNNNGTC 1 cut(s) 568
AhlI ACTAGT 1 cut(s) 590
AjiI CACGTC 1 cut(s) 853
AjnI CCWGG 3 cut(s) 360, 531, 810
AjuI GAANNNNNNNTTGG 2 cut(s) 464, 496
AleI CACNNNNGTG 1 cut(s) 216
AloI GAACNNNNNNTCC 2 cut(s) 1045, 1077
AluBI AGCT 4 cut(s) 120, 491, 614, 779
AluI AGCT 4 cut(s) 120, 491, 614, 779
Alw21I GWGCWC 2 cut(s) 97, 531
Alw26I GTCTC 1 cut(s) 490
Alw44I GTGCAC 1 cut(s) 527
AlwI GGATC 4 cut(s) 147, 512, 1061, 1174
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 1 cut(s) 406
ApaLI GTGCAC 1 cut(s) 527
ApeKI GCWGC 2 cut(s) 614, 689
Asp700I GAANNNNTTC 1 cut(s) 846
AspS9I GGNCC 1 cut(s) 562
AsuHPI GGTGA 5 cut(s) 230, 259, 316, 388, 659
AsuNHI GCTAGC 1 cut(s) 116
AvaI CYCGRG 1 cut(s) 90
AvaII GGWCC 1 cut(s) 562
AxyI CCTNAGG 1 cut(s) 522
BaeGI GKGCMC 2 cut(s) 11, 531
BaeI ACNNNNGTAYC 4 cut(s) 440, 473, 969, 1002
BauI CACGAG 1 cut(s) 1217
Bbv12I GWGCWC 2 cut(s) 97, 531
BbvI GCAGC 2 cut(s) 601, 676
BccI CCATC 4 cut(s) 26, 106, 1112, 1187
BceAI ACGGC 2 cut(s) 123, 940
BcgI CGANNNNNNTGC 2 cut(s) 882, 916
BciT130I CCWGG 3 cut(s) 362, 533, 812
BciVI GTATCC 1 cut(s) 725
BclI TGATCA 1 cut(s) 1213
BcoDI GTCTC 1 cut(s) 490
BcuI ACTAGT 1 cut(s) 590
BfaI CTAG 5 cut(s) 117, 173, 404, 591, 611
BfuI GTATCC 1 cut(s) 725
BisI GCNGC 5 cut(s) 148, 199, 234, 615, 690
BlsI GCNGC 5 cut(s) 149, 200, 235, 616, 691
BmcAI AGTACT 1 cut(s) 630
Bme1390I CCNGG 3 cut(s) 362, 533, 812
Bme18I GGWCC 1 cut(s) 562
BmeRI GACNNNNNGTC 1 cut(s) 568
BmeT110I CYCGRG 1 cut(s) 90
BmgBI CACGTC 1 cut(s) 853
BmgT120I GGNCC 1 cut(s) 562
BmiI GGNNCC 4 cut(s) 255, 394, 439, 564
BmrFI CCNGG 3 cut(s) 362, 533, 812
BmrI ACTGGG 2 cut(s) 169, 681
BmtI GCTAGC 1 cut(s) 120
BmuI ACTGGG 2 cut(s) 169, 681
BpmI CTGGAG 3 cut(s) 154, 249, 1037
BpuEI CTTGAG 1 cut(s) 932
BsaBI GATNNNNATC 1 cut(s) 1089
BsaI GGTCTC 1 cut(s) 490
BsaJI CCNNGG 4 cut(s) 243, 361, 532, 811
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 803
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 4 cut(s) 137, 164, 676, 1104
Bse21I CCTNAGG 1 cut(s) 522
Bse8I GATNNNNATC 1 cut(s) 1089
BseBI CCWGG 3 cut(s) 362, 533, 812
BseDI CCNNGG 4 cut(s) 243, 361, 532, 811
BseGI GGATG 4 cut(s) 421, 1135, 1195, 1216
BseJI GATNNNNATC 1 cut(s) 1089
BseLI CCNNNNNNNGG 1 cut(s) 803
BseMII CTCAG 7 cut(s) 60, 80, 134, 501, 558, 1152, 1163
BseNI ACTGG 4 cut(s) 137, 164, 676, 1104
BseRI GAGGAG 1 cut(s) 524
BseSI GKGCMC 2 cut(s) 11, 531
BseXI GCAGC 2 cut(s) 601, 676
BsgI GTGCAG 2 cut(s) 600, 675
Bsh1236I CGCG 1 cut(s) 470
BshFI GGCC 1 cut(s) 408
BsiHKAI GWGCWC 2 cut(s) 97, 531
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 2 cut(s) 27, 409
BslFI GGGAC 2 cut(s) 869, 1057
BslI CCNNNNNNNGG 1 cut(s) 803
BsmAI GTCTC 1 cut(s) 490
BsmFI GGGAC 2 cut(s) 869, 1057
BsnI GGCC 1 cut(s) 408
Bso31I GGTCTC 1 cut(s) 490
BsoBI CYCGRG 1 cut(s) 90
Bsp1286I GDGCHC 3 cut(s) 11, 97, 531
Bsp143I GATC 9 cut(s) 139, 517, 601, 748, 1053, 1084, 1090, 1179, 1213
BspACI CCGC 6 cut(s) 147, 196, 199, 233, 236, 374
BspANI GGCC 1 cut(s) 408
BspCNI CTCAG 7 cut(s) 59, 79, 135, 500, 559, 1153, 1162
BspFNI CGCG 1 cut(s) 470
BspLI GGNNCC 4 cut(s) 255, 394, 439, 564
BspOI GCTAGC 1 cut(s) 120
BspPI GGATC 4 cut(s) 147, 512, 1061, 1174
BspTNI GGTCTC 1 cut(s) 490
BsrBI CCGCTC 2 cut(s) 147, 233
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 4 cut(s) 137, 164, 676, 1104
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 4 cut(s) 243, 361, 532, 811
BssMI GATC 9 cut(s) 139, 517, 601, 748, 1053, 1084, 1090, 1179, 1213
BssSI CACGAG 1 cut(s) 1217
Bst2BI CACGAG 1 cut(s) 1217
Bst2UI CCWGG 3 cut(s) 362, 533, 812
Bst4CI ACNGT 1 cut(s) 667
BstC8I GCNNGC 3 cut(s) 28, 118, 793
BstDEI CTNAG 8 cut(s) 46, 66, 143, 487, 522, 567, 1149, 1161
BstDSI CCRYGG 1 cut(s) 243
BstF5I GGATG 4 cut(s) 421, 1135, 1195, 1216
BstFNI CGCG 1 cut(s) 470
BstKTI GATC 9 cut(s) 142, 520, 604, 751, 1056, 1087, 1093, 1182, 1216
BstMAI GTCTC 1 cut(s) 490
BstMBI GATC 9 cut(s) 139, 517, 601, 748, 1053, 1084, 1090, 1179, 1213
BstMWI GCNNNNNNNGC 4 cut(s) 122, 233, 614, 695
BstNI CCWGG 3 cut(s) 362, 533, 812
BstSCI CCNGG 3 cut(s) 360, 531, 810
BstSLI GKGCMC 2 cut(s) 11, 531
BstUI CGCG 1 cut(s) 470
BstV1I GCAGC 2 cut(s) 601, 676
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
Bsu36I CCTNAGG 1 cut(s) 522
BsuI GTATCC 1 cut(s) 725
BsuRI GGCC 1 cut(s) 408
BtgI CCRYGG 1 cut(s) 243
BtgZI GCGATG 2 cut(s) 45, 125
BtrI CACGTC 1 cut(s) 853
BtsCI GGATG 4 cut(s) 421, 1135, 1195, 1216
BtsIMutI CAGTG 4 cut(s) 552, 669, 1097, 1157
Cac8I GCNNGC 3 cut(s) 28, 118, 793
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 562
CseI GACGC 2 cut(s) 476, 699
Csp6I GTAC 5 cut(s) 292, 298, 449, 629, 676
CviAII CATG 6 cut(s) 301, 429, 452, 682, 917, 1031
CviQI GTAC 5 cut(s) 292, 298, 449, 629, 676
DdeI CTNAG 8 cut(s) 46, 66, 143, 487, 522, 567, 1149, 1161
DpnI GATC 9 cut(s) 141, 519, 603, 750, 1055, 1086, 1092, 1181, 1215
DpnII GATC 9 cut(s) 139, 517, 601, 748, 1053, 1084, 1090, 1179, 1213
DraI TTTAAA 1 cut(s) 820
DriI GACNNNNNGTC 1 cut(s) 568
Eam1105I GACNNNNNGTC 1 cut(s) 568
EciI GGCGGA 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 490
Eco32I GATATC 1 cut(s) 880
Eco47I GGWCC 1 cut(s) 562
Eco81I CCTNAGG 1 cut(s) 522
Eco88I CYCGRG 1 cut(s) 90
EcoRII CCWGG 3 cut(s) 360, 531, 810
EcoRV GATATC 1 cut(s) 880
FaeI CATG 6 cut(s) 304, 432, 455, 685, 920, 1034
FalI AAGNNNNNCTT 2 cut(s) 615, 647
FaqI GGGAC 2 cut(s) 869, 1057
FatI CATG 6 cut(s) 300, 428, 451, 681, 916, 1030
FbaI TGATCA 1 cut(s) 1213
FblI GTMKAC 1 cut(s) 169
Fnu4HI GCNGC 5 cut(s) 148, 199, 234, 615, 690
FokI GGATG 4 cut(s) 428, 1142, 1202, 1223
Fsp4HI GCNGC 5 cut(s) 148, 199, 234, 615, 690
FspBI CTAG 5 cut(s) 117, 173, 404, 591, 611
GluI GCNGC 5 cut(s) 148, 199, 234, 615, 690
GsuI CTGGAG 3 cut(s) 154, 249, 1037
HaeIII GGCC 1 cut(s) 408
HapII CCGG 2 cut(s) 27, 409
HgaI GACGC 2 cut(s) 476, 699
Hin1II CATG 6 cut(s) 304, 432, 455, 685, 920, 1034
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 3 cut(s) 569, 899, 936
HpaII CCGG 2 cut(s) 27, 409
HphI GGTGA 5 cut(s) 230, 259, 316, 388, 659
Hpy166II GTNNAC 6 cut(s) 87, 170, 466, 529, 1105, 1158
Hpy188I TCNGA 5 cut(s) 49, 144, 715, 923, 1066
Hpy8I GTNNAC 6 cut(s) 87, 170, 466, 529, 1105, 1158
HpyAV CCTTC 3 cut(s) 244, 383, 1120
HpyCH4III ACNGT 1 cut(s) 667
HpyCH4IV ACGT 1 cut(s) 852
HpyCH4V TGCA 9 cut(s) 4, 125, 323, 529, 617, 692, 1009, 1030, 1040
HpyF10VI GCNNNNNNNGC 4 cut(s) 122, 233, 614, 695
HpyF3I CTNAG 8 cut(s) 46, 66, 143, 487, 522, 567, 1149, 1161
HpySE526I ACGT 1 cut(s) 852
Hsp92II CATG 6 cut(s) 304, 432, 455, 685, 920, 1034
KroI GCCGGC 1 cut(s) 26
KroNI GCCGGC 1 cut(s) 28
Ksp22I TGATCA 1 cut(s) 1213
Kzo9I GATC 9 cut(s) 139, 517, 601, 748, 1053, 1084, 1090, 1179, 1213
LmnI GCTCC 2 cut(s) 230, 253
Lsp1109I GCAGC 2 cut(s) 601, 676
MaeI CTAG 5 cut(s) 117, 173, 404, 591, 611
MaeII ACGT 1 cut(s) 852
MaeIII GTNAC 5 cut(s) 376, 667, 772, 862, 985
MalI GATC 9 cut(s) 141, 519, 603, 750, 1055, 1086, 1092, 1181, 1215
MbiI CCGCTC 2 cut(s) 147, 233
MboI GATC 9 cut(s) 139, 517, 601, 748, 1053, 1084, 1090, 1179, 1213
MboII GAAGA 6 cut(s) 51, 62, 65, 662, 839, 1177
MfeI CAATTG 1 cut(s) 381
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 3 cut(s) 11, 97, 531
MluCI AATT 5 cut(s) 381, 478, 699, 822, 1073
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 2 cut(s) 901, 1188
MroNI GCCGGC 1 cut(s) 26
MroXI GAANNNNTTC 1 cut(s) 846
MseI TTAA 3 cut(s) 477, 621, 819
MslI CAYNNNNRTG 2 cut(s) 216, 557
MspI CCGG 2 cut(s) 27, 409
MspR9I CCNGG 3 cut(s) 362, 533, 812
MunI CAATTG 1 cut(s) 381
MvaI CCWGG 3 cut(s) 362, 533, 812
MvnI CGCG 1 cut(s) 470
MwoI GCNNNNNNNGC 4 cut(s) 122, 233, 614, 695
NaeI GCCGGC 1 cut(s) 28
NdeII GATC 9 cut(s) 139, 517, 601, 748, 1053, 1084, 1090, 1179, 1213
NgoMIV GCCGGC 1 cut(s) 26
NheI GCTAGC 1 cut(s) 116
NlaIII CATG 6 cut(s) 304, 432, 455, 685, 920, 1034
NlaIV GGNNCC 4 cut(s) 255, 394, 439, 564
NmuCI GTSAC 5 cut(s) 376, 667, 772, 862, 985
OliI CACNNNNGTG 1 cut(s) 216
PaeR7I CTCGAG 1 cut(s) 90
PdiI GCCGGC 1 cut(s) 28
PdmI GAANNNNTTC 1 cut(s) 846
PfeI GAWTC 2 cut(s) 899, 936
PkrI GCNGC 5 cut(s) 149, 200, 235, 616, 691
PleI GAGTC 1 cut(s) 577
PpsI GAGTC 1 cut(s) 577
Psp6I CCWGG 3 cut(s) 360, 531, 810
PspGI CCWGG 3 cut(s) 360, 531, 810
PspN4I GGNNCC 4 cut(s) 255, 394, 439, 564
PspPI GGNCC 1 cut(s) 562
PspXI VCTCGAGB 1 cut(s) 90
PsuI RGATCY 1 cut(s) 139
RsaI GTAC 5 cut(s) 293, 299, 450, 630, 677
RsaNI GTAC 5 cut(s) 292, 298, 449, 629, 676
RseI CAYNNNNRTG 2 cut(s) 216, 557
SaqAI TTAA 3 cut(s) 477, 621, 819
SatI GCNGC 5 cut(s) 148, 199, 234, 615, 690
Sau3AI GATC 9 cut(s) 139, 517, 601, 748, 1053, 1084, 1090, 1179, 1213
Sau96I GGNCC 1 cut(s) 562
ScaI AGTACT 1 cut(s) 630
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 3 cut(s) 362, 533, 812
SduI GDGCHC 3 cut(s) 11, 97, 531
SetI ASST 9 cut(s) 122, 280, 493, 528, 616, 765, 781, 855, 1063
Sfr274I CTCGAG 1 cut(s) 90
SinI GGWCC 1 cut(s) 562
SlaI CTCGAG 1 cut(s) 90
SmiMI CAYNNNNRTG 2 cut(s) 216, 557
SmlI CTYRAG 2 cut(s) 90, 947
SmoI CTYRAG 2 cut(s) 90, 947
SpeI ACTAGT 1 cut(s) 590
Sse9I AATT 5 cut(s) 381, 478, 699, 822, 1073
SsiI CCGC 6 cut(s) 147, 196, 199, 233, 236, 374
SspI AATATT 1 cut(s) 314
SspMI CTAG 5 cut(s) 117, 173, 404, 591, 611
StyD4I CCNGG 3 cut(s) 360, 531, 810
TaaI ACNGT 1 cut(s) 667
TaiI ACGT 1 cut(s) 855
TaqI TCGA 3 cut(s) 91, 183, 939
TasI AATT 5 cut(s) 381, 478, 699, 822, 1073
TatI WGTACW 3 cut(s) 291, 297, 628
TauI GCSGC 3 cut(s) 150, 201, 236
TfiI GAWTC 2 cut(s) 899, 936
Tru1I TTAA 3 cut(s) 477, 621, 819
Tru9I TTAA 3 cut(s) 477, 621, 819
TscAI CASTG 4 cut(s) 559, 676, 1104, 1157
TseFI GTSAC 5 cut(s) 376, 667, 772, 862, 985
TseI GCWGC 2 cut(s) 614, 689
Tsp45I GTSAC 5 cut(s) 376, 667, 772, 862, 985
TspDTI ATGAA 6 cut(s) 402, 417, 651, 713, 905, 1146
TspGWI ACGGA 2 cut(s) 232, 744
TspRI CASTG 4 cut(s) 559, 676, 1104, 1157
VneI GTGCAC 1 cut(s) 527
VpaK11BI GGWCC 1 cut(s) 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 1190
XhoI CTCGAG 1 cut(s) 90
XmiI GTMKAC 1 cut(s) 169
XmnI GAANNNNTTC 1 cut(s) 846
XspI CTAG 5 cut(s) 117, 173, 404, 591, 611
ZrmI AGTACT 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.