Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002154

Physical Location & Seq

Genomic Coordinates Forward (+)

17354983 .. 17356345

Gene Structure 1363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG206900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCCGGAGGTATAGCAACAAGGTGGAGGGTTCTAAGCGGCGAAGACGAGTGGGAGGGCCTACTAGACCCTCTCGACATTGATCTCCGCCACTATATCATTCACTACGGGGAAAGGGCGGGAGCCGTAGCCGTGGTGTACGAACCAAAGTCGAAGAACTACCGACTTCCTCGATACTTAAAGGAACATTTGTTCTCAAAGGTGGGTTTGCAGAGTGCAATCCCTCTGCTATCCATCGGGAAATCAAATTTTCTCGGTTTTGTTGCGGTTACAACAGATGAAGGAGCCAAAGTGTTGGGGAGGAGGGACGTTTTGATTTCTTGGAGAGGAACCCAGTTGGAACATGAGAAGCTTGTGGACGCCGACATCGCTTTAGTTTCAGCTTCTGACATTCTGGGATCGAATAACGGACTCAATCCTTTGGTGCACCAAGGTTGGCTGTCCTACTACACTCATAAGGACATTCTGTCCCCACACAATCAACTACGTAGTTGCAGAGATCAGGTTCTAGCTGCACTTAAATCAGTACTAGAAGAATACAAGGATGAAGAAATCAGCATTGCTGTCACTGATCAATCGGACAAGCTGATTCCTGTGACAGCAATTGTGTTTGCCAGCCCCCGACTAGGCGATGAGGGATTCGAGAAGGTGTTTTCTGGTCTCGAAAACCTTCACGTCTTGCGTGTCACTAATGACCAAGATATTGTTCCTAAATTACCATATTTGGATGGTAAATATGTTCATGTTGGACAAGAGTTGAGAATCGACAGTCTCAAGTCGCCCTACTTGAAGGTTATCCCTGAATCAGATAAAGCAGGAAGGCTTGGCAGTTTGCACGATCTGGAGGTTTACTTGCATGGTGTTGCAGGGACACAGGGAATCGAAAGTAACGATTTTAAATTGGAAGTGAATCGTGATCTCGCACTGGTAAACAAATATATTGATCTTCTGAAGGACGAACATAAGGTAGTTGGCAGCTGGTGGACTGAGAAGAACAAGTCTATGATTCAAATGGATGATGGCTCTTGGGTCTTGGATGATCGTGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

350

Amino Acids

39.27

Weight (kDa)

5.41

Isoelectric Point (pI)

28.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	106 - 190	5.3e-06	Lipase (class 3)
Lipase_3	PF01764	194 - 242	2.5e-08	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19750 FvH4_5g19760
malus_domestica	MD04G1058700.v1.1
prunus_persica	Prupe.5G062500_v2.0.a1 Prupe.5G062600_v2.0.a1 Prupe.5G062700_v2.0.a1
pyrus_communis	pycom04g05260
rosa_chinensis	RchiOBHm_Chr7g0203651 RchiOBHm_Chr7g0203681 RchiOBHm_Chr7g0204521 RchiOBHm_Chr7g0204541
rosa_laevigata	RLG00000003452 RLG00000003453 RLG00000003512
rosa_multiflora	Rmu_co8274427.1_g000001 Rmu_co8340383.1_g000001 Rmu_sc0005354.1_g000007 Rmu_ssc0000443.1_g000023 Rmu_ssc0000443.1_g000033
rosa_roxburghii	Rroxscaffold_3G00253010 Rroxscaffold_3G00253020 Rroxscaffold_3G00253540 Rroxscaffold_3G00253610 Rroxscaffold_6G00397050 Rroxscaffold_6G00397100
rosa_rugosa	Rorug07G0078000 Rorug07G0084900 Rorug07G0085000
rosa_samantha	Rh7AG207600 Rh7AG214200 Rh7AG214300 Rh7BG206900 Rh7BG211700 Rh7BG211800 Rh7CG219900 Rh7CG227300 Rh7DG214500 Rh7DG214700 Rh7DG221800 Rh7DG222000
rosa_wichuraiana	Rw7G018100 Rw7G018570 Rw7G018580 Rw7G018590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	39, 88, 119, 266
AclWI	GGATC	1 cut(s)	406
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	247
AcuI	CTGAAG	1 cut(s)	971
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	2 cut(s)	140, 528
AfiI	CCNNNNNNNGG	1 cut(s)	626
AgsI	TTSAA	2 cut(s)	790, 1010
AhdI	GACNNNNNGTC	1 cut(s)	466
AjiI	CACGTC	1 cut(s)	676
AjuI	GAANNNNNNNTTGG	2 cut(s)	690, 722
AloI	GAACNNNNNNTCC	2 cut(s)	176, 208
AluBI	AGCT	5 cut(s)	352, 383, 512, 586, 978
AluI	AGCT	5 cut(s)	352, 383, 512, 586, 978
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	2 cut(s)	665, 776
Alw44I	GTGCAC	1 cut(s)	425
AlwI	GGATC	1 cut(s)	406
AlwNI	CAGNNNCTG	1 cut(s)	386
AoxI	GGCC	2 cut(s)	3, 58
ApaLI	GTGCAC	1 cut(s)	425
ApeKI	GCWGC	2 cut(s)	512, 975
ApoI	RAATTY	1 cut(s)	247
Asp700I	GAANNNNTTC	1 cut(s)	669
AspS9I	GGNCC	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	2 cut(s)	499, 987
BccI	CCATC	3 cut(s)	242, 722, 1013
BceAI	ACGGC	2 cut(s)	110, 116
BclI	TGATCA	1 cut(s)	571
BcoDI	GTCTC	2 cut(s)	665, 776
BfaI	CTAG	4 cut(s)	65, 509, 530, 626
BisI	GCNGC	3 cut(s)	40, 513, 976
BlsI	GCNGC	3 cut(s)	41, 514, 977
BmcAI	AGTACT	1 cut(s)	528
BmeRI	GACNNNNNGTC	1 cut(s)	466
BmgBI	CACGTC	1 cut(s)	676
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	3 cut(s)	124, 286, 331
BmrI	ACTGGG	1 cut(s)	328
BmuI	ACTGGG	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	863
BpuEI	CTTGAG	1 cut(s)	758
BsaAI	YACGTR	1 cut(s)	488
BsaHI	GRCGYC	1 cut(s)	360
BsaI	GGTCTC	1 cut(s)	665
BsaJI	CCNNGG	2 cut(s)	132, 430
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	626
Bse1I	ACTGG	2 cut(s)	334, 930
Bse3DI	GCAATG	1 cut(s)	558
BseDI	CCNNGG	2 cut(s)	132, 430
BseGI	GGATG	4 cut(s)	550, 733, 1021, 1042
BseLI	CCNNNNNNNGG	1 cut(s)	626
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	1 cut(s)	978
BseNI	ACTGG	2 cut(s)	334, 930
BseRI	GAGGAG	1 cut(s)	316
BseSI	GKGCMC	1 cut(s)	429
BseXI	GCAGC	2 cut(s)	499, 987
BsgI	GTGCAG	1 cut(s)	498
BshFI	GGCC	2 cut(s)	5, 60
BsiHKAI	GWGCWC	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	3 cut(s)	320, 454, 883
BslI	CCNNNNNNNGG	1 cut(s)	626
BsmAI	GTCTC	2 cut(s)	665, 776
BsmFI	GGGAC	3 cut(s)	320, 454, 883
BsnI	GGCC	2 cut(s)	5, 60
Bso31I	GGTCTC	1 cut(s)	665
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp143I	GATC	8 cut(s)	82, 398, 499, 571, 838, 916, 943, 1039
BspACI	CCGC	4 cut(s)	39, 88, 119, 266
BspANI	GGCC	2 cut(s)	5, 60
BspCNI	CTCAG	1 cut(s)	979
BspLI	GGNNCC	3 cut(s)	124, 286, 331
BspPI	GGATC	1 cut(s)	406
BspTNI	GGTCTC	1 cut(s)	665
BsrDI	GCAATG	1 cut(s)	558
BsrI	ACTGG	2 cut(s)	334, 930
BssECI	CCNNGG	2 cut(s)	132, 430
BssMI	GATC	8 cut(s)	82, 398, 499, 571, 838, 916, 943, 1039
BssNI	GRCGYC	1 cut(s)	360
BssT1I	CCWWGG	1 cut(s)	430
Bst4CI	ACNGT	1 cut(s)	770
BstACI	GRCGYC	1 cut(s)	360
BstBAI	YACGTR	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	616
BstDEI	CTNAG	2 cut(s)	35, 987
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	4 cut(s)	550, 733, 1021, 1042
BstKTI	GATC	8 cut(s)	85, 401, 502, 574, 841, 919, 946, 1042
BstMAI	GTCTC	2 cut(s)	665, 776
BstMBI	GATC	8 cut(s)	82, 398, 499, 571, 838, 916, 943, 1039
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstSLI	GKGCMC	1 cut(s)	429
BstSNI	TACGTA	1 cut(s)	488
BstV1I	GCAGC	2 cut(s)	499, 987
BstV2I	GAAGAC	1 cut(s)	51
BstXI	CCANNNNNNTGG	1 cut(s)	295
BsuRI	GGCC	2 cut(s)	5, 60
BtgI	CCRYGG	1 cut(s)	132
BtgZI	GCGATG	2 cut(s)	352, 645
BtrI	CACGTC	1 cut(s)	676
BtsCI	GGATG	4 cut(s)	550, 733, 1021, 1042
BtsIMutI	CAGTG	2 cut(s)	567, 923
Cac8I	GCNNGC	1 cut(s)	616
CaiI	CAGNNNCTG	1 cut(s)	386
Cfr13I	GGNCC	1 cut(s)	58
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	139, 527
CviAII	CATG	3 cut(s)	344, 743, 857
CviQI	GTAC	2 cut(s)	139, 527
DdeI	CTNAG	2 cut(s)	35, 987
DpnI	GATC	8 cut(s)	84, 400, 501, 573, 840, 918, 945, 1041
DpnII	GATC	8 cut(s)	82, 398, 499, 571, 838, 916, 943, 1039
DraI	TTTAAA	1 cut(s)	898
DriI	GACNNNNNGTC	1 cut(s)	466
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	466
EciI	GGCGGA	1 cut(s)	77
Eco105I	TACGTA	1 cut(s)	488
Eco130I	CCWWGG	1 cut(s)	430
Eco31I	GGTCTC	1 cut(s)	665
Eco57I	CTGAAG	1 cut(s)	971
EcoO109I	RGGNCCY	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	3 cut(s)	347, 746, 860
FaqI	GGGAC	3 cut(s)	320, 454, 883
FatI	CATG	3 cut(s)	343, 742, 856
FauI	CCCGC	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	3 cut(s)	40, 513, 976
FokI	GGATG	4 cut(s)	557, 740, 1028, 1049
Fsp4HI	GCNGC	3 cut(s)	40, 513, 976
FspBI	CTAG	4 cut(s)	65, 509, 530, 626
GluI	GCNGC	3 cut(s)	40, 513, 976
GsuI	CTGGAG	1 cut(s)	863
HaeIII	GGCC	2 cut(s)	5, 60
HapII	CCGG	1 cut(s)	6
HgaI	GACGC	1 cut(s)	368
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	3 cut(s)	347, 746, 860
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	9 cut(s)	411, 589, 639, 762, 803, 879, 910, 1006, 1046
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	6 cut(s)	139, 358, 427, 850, 931, 984
Hpy188I	TCNGA	4 cut(s)	388, 580, 808, 951
Hpy188III	TCNNGA	8 cut(s)	74, 238, 643, 662, 842, 914, 1043, 1050
Hpy8I	GTNNAC	6 cut(s)	139, 358, 427, 850, 931, 984
HpyAV	CCTTC	6 cut(s)	275, 640, 680, 784, 813, 946
HpyCH4III	ACNGT	1 cut(s)	770
HpyCH4IV	ACGT	3 cut(s)	309, 487, 675
HpyCH4V	TGCA	8 cut(s)	211, 218, 427, 495, 515, 835, 856, 866
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	2 cut(s)	35, 987
HpySE526I	ACGT	3 cut(s)	309, 487, 675
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	3 cut(s)	347, 746, 860
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	8 cut(s)	82, 398, 499, 571, 838, 916, 943, 1039
LmnI	GCTCC	2 cut(s)	122, 284
Lsp1109I	GCAGC	2 cut(s)	499, 987
MaeI	CTAG	4 cut(s)	65, 509, 530, 626
MaeII	ACGT	3 cut(s)	309, 487, 675
MaeIII	GTNAC	5 cut(s)	268, 565, 595, 685, 887
MalI	GATC	8 cut(s)	84, 400, 501, 573, 840, 918, 945, 1041
MboI	GATC	8 cut(s)	82, 398, 499, 571, 838, 916, 943, 1039
MboII	GAAGA	6 cut(s)	56, 166, 545, 560, 938, 1003
MfeI	CAATTG	1 cut(s)	603
MhlI	GDGCHC	1 cut(s)	429
MluCI	AATT	4 cut(s)	247, 603, 713, 899
MlyI	GAGTC	1 cut(s)	405
MmeI	TCCRAC	2 cut(s)	318, 727
MroXI	GAANNNNTTC	1 cut(s)	669
MseI	TTAA	3 cut(s)	179, 519, 897
MspA1I	CMGCKG	1 cut(s)	978
MspI	CCGG	1 cut(s)	6
MunI	CAATTG	1 cut(s)	603
MwoI	GCNNNNNNNGC	1 cut(s)	368
NdeII	GATC	8 cut(s)	82, 398, 499, 571, 838, 916, 943, 1039
NlaIII	CATG	3 cut(s)	347, 746, 860
NlaIV	GGNNCC	3 cut(s)	124, 286, 331
NmuCI	GTSAC	3 cut(s)	565, 595, 685
PcsI	WCGNNNNNNNCGW	1 cut(s)	888
PdmI	GAANNNNTTC	1 cut(s)	669
PfeI	GAWTC	7 cut(s)	589, 639, 762, 803, 879, 910, 1006
PkrI	GCNGC	3 cut(s)	41, 514, 977
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
Ppu21I	YACGTR	1 cut(s)	488
PspN4I	GGNNCC	3 cut(s)	124, 286, 331
PspPI	GGNCC	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	386
PvuII	CAGCTG	1 cut(s)	978
RsaI	GTAC	2 cut(s)	140, 528
RsaNI	GTAC	2 cut(s)	139, 527
SaqAI	TTAA	3 cut(s)	179, 519, 897
SatI	GCNGC	3 cut(s)	40, 513, 976
Sau3AI	GATC	8 cut(s)	82, 398, 499, 571, 838, 916, 943, 1039
Sau96I	GGNCC	1 cut(s)	58
ScaI	AGTACT	1 cut(s)	528
SchI	GAGTC	1 cut(s)	405
SduI	GDGCHC	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
SnaBI	TACGTA	1 cut(s)	488
Sse9I	AATT	4 cut(s)	247, 603, 713, 899
SsiI	CCGC	4 cut(s)	39, 88, 119, 266
SspMI	CTAG	4 cut(s)	65, 509, 530, 626
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	1 cut(s)	770
TaiI	ACGT	3 cut(s)	312, 490, 678
TaqI	TCGA	8 cut(s)	75, 152, 172, 401, 642, 663, 765, 882
TasI	AATT	4 cut(s)	247, 603, 713, 899
TatI	WGTACW	1 cut(s)	526
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	7 cut(s)	589, 639, 762, 803, 879, 910, 1006
Tru1I	TTAA	3 cut(s)	179, 519, 897
Tru9I	TTAA	3 cut(s)	179, 519, 897
TscAI	CASTG	2 cut(s)	574, 930
TseFI	GTSAC	3 cut(s)	565, 595, 685
TseI	GCWGC	2 cut(s)	512, 975
Tsp45I	GTSAC	3 cut(s)	565, 595, 685
TspDTI	ATGAA	3 cut(s)	294, 561, 731
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	2 cut(s)	574, 930
VneI	GTGCAC	1 cut(s)	425
XapI	RAATTY	1 cut(s)	247
XmnI	GAANNNNTTC	1 cut(s)	669
XspI	CTAG	4 cut(s)	65, 509, 530, 626
ZrmI	AGTACT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.