Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002154

Physical Location & Seq

Genomic Coordinates Forward (+)

6670485 .. 6671393

Gene Structure 909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0084900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTACCTACCCCATGCAATGCAATCTCCCCAAACCTCAACACCTTCAACTCACAGCACAAACTCATCAGCCATCACCCTCTCCACCCTTGCGTCCTCTTACATCAAAACCATGTCGACCGAGGCAGCCAAGCCCACTGGCTACAAGCAACTCGACCGCGAGCTCCGTGAAATGATCACTTCCATCACCAACCGCGTGACCGATCATCACAAGTCCGGCTCGGCCCACGGCCACGAGGAGGACGAGGACGAGCATGGTGTGAGGATCATCACCCTTGCCGGAAACAACACCGGAGCCACATTGCGGAGCGAGTTGGATGATCATCAGGACAATCATCGTAAACGTGGCGGCCATCATGGTCTTCATCTAGGAAGTCCTGATGAAGACCCCGAGGGGCTGAGCACATATGTGAACAGCAACTTCCAAGCCATCAACAACTCGCTCGTGATGGGGGGTAGCTACACTACTAATGATCCGGGTGTTCATCTCGACATTACTGATTTTTTCGAACCACATGGGCATAGTAAGCCGGAGAAGAAGGGGTGGAAGGGTAAGAAAAAAGAGAAGAGCGACCAGCATCAGGAGCATGATGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

199

Amino Acids

22.01

Weight (kDa)

5.9

Isoelectric Point (pI)

31.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19750 FvH4_5g19760
malus_domestica	MD04G1058700.v1.1
prunus_persica	Prupe.5G062500_v2.0.a1 Prupe.5G062600_v2.0.a1 Prupe.5G062700_v2.0.a1
pyrus_communis	pycom04g05260
rosa_chinensis	RchiOBHm_Chr7g0203651 RchiOBHm_Chr7g0203681 RchiOBHm_Chr7g0204521 RchiOBHm_Chr7g0204541
rosa_laevigata	RLG00000003452 RLG00000003453 RLG00000003512
rosa_multiflora	Rmu_co8274427.1_g000001 Rmu_co8340383.1_g000001 Rmu_sc0005354.1_g000007 Rmu_ssc0000443.1_g000023 Rmu_ssc0000443.1_g000033
rosa_roxburghii	Rroxscaffold_3G00253010 Rroxscaffold_3G00253020 Rroxscaffold_3G00253540 Rroxscaffold_3G00253610 Rroxscaffold_6G00397050 Rroxscaffold_6G00397100
rosa_rugosa	Rorug07G0078000 Rorug07G0084900 Rorug07G0085000
rosa_samantha	Rh7AG207600 Rh7AG214200 Rh7AG214300 Rh7BG206900 Rh7BG211700 Rh7BG211800 Rh7CG219900 Rh7CG227300 Rh7DG214500 Rh7DG214700 Rh7DG221800 Rh7DG222000
rosa_wichuraiana	Rw7G018100 Rw7G018570 Rw7G018580 Rw7G018590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	116
AccII	CGCG	2 cut(s)	159, 195
AciI	CCGC	4 cut(s)	157, 193, 304, 348
AclWI	GGATC	2 cut(s)	272, 467
AcoI	YGGCCR	2 cut(s)	229, 349
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	238, 303, 580
AgsI	TTSAA	1 cut(s)	48
AleI	CACNNNNGTG	1 cut(s)	407
AluBI	AGCT	2 cut(s)	163, 459
AluI	AGCT	2 cut(s)	163, 459
Alw21I	GWGCWC	2 cut(s)	165, 404
AlwI	GGATC	2 cut(s)	272, 467
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	3 cut(s)	222, 229, 349
ApeKI	GCWGC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	223
AsuC2I	CCSGG	1 cut(s)	477
AsuHPI	GGTGA	3 cut(s)	67, 178, 262
AsuII	TTCGAA	1 cut(s)	507
AvaI	CYCGRG	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	165
BauI	CACGAG	2 cut(s)	233, 443
BbsI	GAAGAC	2 cut(s)	353, 390
Bbv12I	GWGCWC	2 cut(s)	165, 404
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	5 cut(s)	80, 191, 360, 437, 442
BceAI	ACGGC	1 cut(s)	244
BclI	TGATCA	2 cut(s)	174, 319
BcnI	CCSGG	1 cut(s)	477
BfaI	CTAG	1 cut(s)	368
BisI	GCNGC	2 cut(s)	126, 349
BlpI	GCTNAGC	1 cut(s)	398
BlsI	GCNGC	2 cut(s)	127, 350
Bme1390I	CCNGG	1 cut(s)	477
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	1 cut(s)	477
BmsI	GCATC	1 cut(s)	586
BpiI	GAAGAC	2 cut(s)	353, 390
Bpu1102I	GCTNAGC	1 cut(s)	398
Bpu14I	TTCGAA	1 cut(s)	507
BpuMI	CCSGG	1 cut(s)	477
BsaBI	GATNNNNATC	1 cut(s)	321
BsaJI	CCNNGG	3 cut(s)	120, 226, 390
BsaWI	WCCGGW	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 303, 580
Bse1I	ACTGG	1 cut(s)	142
Bse3DI	GCAATG	2 cut(s)	24, 299
Bse8I	GATNNNNATC	1 cut(s)	321
BseDI	CCNNGG	3 cut(s)	120, 226, 390
BseGI	GGATG	1 cut(s)	322
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	3 cut(s)	238, 303, 580
BseMI	GCAATG	2 cut(s)	24, 299
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	1 cut(s)	142
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	1 cut(s)	137
Bsh1236I	CGCG	2 cut(s)	159, 195
Bsh1285I	CGRYCG	2 cut(s)	120, 157
BshFI	GGCC	3 cut(s)	224, 231, 351
BsiEI	CGRYCG	2 cut(s)	120, 157
BsiHKAI	GWGCWC	2 cut(s)	165, 404
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	5 cut(s)	216, 279, 291, 476, 530
BslI	CCNNNNNNNGG	3 cut(s)	238, 303, 580
BsnI	GGCC	3 cut(s)	224, 231, 351
BsoBI	CYCGRG	1 cut(s)	389
Bsp119I	TTCGAA	1 cut(s)	507
Bsp1286I	GDGCHC	2 cut(s)	165, 404
Bsp143I	GATC	5 cut(s)	174, 202, 264, 319, 472
Bsp1720I	GCTNAGC	1 cut(s)	398
BspACI	CCGC	4 cut(s)	157, 193, 304, 348
BspANI	GGCC	3 cut(s)	224, 231, 351
BspCNI	CTCAG	1 cut(s)	390
BspFNI	CGCG	2 cut(s)	159, 195
BspLI	GGNNCC	1 cut(s)	295
BspPI	GGATC	2 cut(s)	272, 467
BspQI	GCTCTTC	1 cut(s)	560
BspT104I	TTCGAA	1 cut(s)	507
BsrDI	GCAATG	2 cut(s)	24, 299
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	3 cut(s)	120, 226, 390
BssMI	GATC	5 cut(s)	174, 202, 264, 319, 472
BssSI	CACGAG	2 cut(s)	233, 443
Bst2BI	CACGAG	2 cut(s)	233, 443
Bst6I	CTCTTC	1 cut(s)	560
BstBI	TTCGAA	1 cut(s)	507
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	1 cut(s)	398
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	322
BstFNI	CGCG	2 cut(s)	159, 195
BstKTI	GATC	5 cut(s)	177, 205, 267, 322, 475
BstMBI	GATC	5 cut(s)	174, 202, 264, 319, 472
BstMCI	CGRYCG	2 cut(s)	120, 157
BstMWI	GCNNNNNNNGC	2 cut(s)	526, 583
BstSCI	CCNGG	1 cut(s)	475
BstUI	CGCG	2 cut(s)	159, 195
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	2 cut(s)	353, 390
BsuRI	GGCC	3 cut(s)	224, 231, 351
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	223
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	6 cut(s)	14, 112, 254, 356, 515, 587
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	5 cut(s)	176, 204, 266, 321, 474
DpnII	GATC	5 cut(s)	174, 202, 264, 319, 472
EaeI	YGGCCR	2 cut(s)	229, 349
Eam1104I	CTCTTC	1 cut(s)	560
EarI	CTCTTC	1 cut(s)	560
Ecl136II	GAGCTC	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	163
Eco88I	CYCGRG	1 cut(s)	389
EcoICRI	GAGCTC	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	165
FaeI	CATG	6 cut(s)	17, 115, 257, 359, 518, 590
FaiI	YATR	9 cut(s)	15, 113, 255, 357, 406, 408, 516, 522, 588
FatI	CATG	6 cut(s)	13, 111, 253, 355, 514, 586
FauNDI	CATATG	1 cut(s)	406
FbaI	TGATCA	2 cut(s)	174, 319
FblI	GTMKAC	1 cut(s)	116
Fnu4HI	GCNGC	2 cut(s)	126, 349
FokI	GGATG	1 cut(s)	329
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	2 cut(s)	126, 349
FspBI	CTAG	1 cut(s)	368
GluI	GCNGC	2 cut(s)	126, 349
HaeIII	GGCC	3 cut(s)	224, 231, 351
HapII	CCGG	5 cut(s)	216, 279, 291, 476, 530
HgaI	GACGC	1 cut(s)	81
Hin1II	CATG	6 cut(s)	17, 115, 257, 359, 518, 590
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HpaII	CCGG	5 cut(s)	216, 279, 291, 476, 530
HphI	GGTGA	3 cut(s)	67, 178, 262
Hpy166II	GTNNAC	3 cut(s)	117, 341, 412
Hpy188III	TCNNGA	5 cut(s)	326, 377, 445, 488, 581
Hpy8I	GTNNAC	3 cut(s)	117, 341, 412
HpyAV	CCTTC	3 cut(s)	54, 532, 541
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	2 cut(s)	17, 22
HpyF10VI	GCNNNNNNNGC	2 cut(s)	526, 583
HpyF3I	CTNAG	1 cut(s)	398
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	6 cut(s)	17, 115, 257, 359, 518, 590
Ksp22I	TGATCA	2 cut(s)	174, 319
Kzo9I	GATC	5 cut(s)	174, 202, 264, 319, 472
LguI	GCTCTTC	1 cut(s)	560
LmnI	GCTCC	4 cut(s)	168, 293, 306, 583
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	1 cut(s)	586
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	5 cut(s)	176, 204, 266, 321, 474
MboI	GATC	5 cut(s)	174, 202, 264, 319, 472
MboII	GAAGA	4 cut(s)	353, 395, 547, 577
MhlI	GDGCHC	2 cut(s)	165, 404
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	9 cut(s)	46, 89, 106, 115, 229, 232, 238, 255, 385
MslI	CAYNNNNRTG	2 cut(s)	407, 591
MspI	CCGG	5 cut(s)	216, 279, 291, 476, 530
MspR9I	CCNGG	1 cut(s)	477
MvnI	CGCG	2 cut(s)	159, 195
MwoI	GCNNNNNNNGC	2 cut(s)	526, 583
NciI	CCSGG	1 cut(s)	477
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	5 cut(s)	174, 202, 264, 319, 472
NlaIII	CATG	6 cut(s)	17, 115, 257, 359, 518, 590
NlaIV	GGNNCC	1 cut(s)	295
NmeAIII	GCCGAG	1 cut(s)	200
NmuCI	GTSAC	1 cut(s)	196
NspV	TTCGAA	1 cut(s)	507
OliI	CACNNNNGTG	1 cut(s)	407
PciSI	GCTCTTC	1 cut(s)	560
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PkrI	GCNGC	2 cut(s)	127, 350
Psp124BI	GAGCTC	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	223
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	407, 591
SacI	GAGCTC	1 cut(s)	165
SalI	GTCGAC	1 cut(s)	115
SapI	GCTCTTC	1 cut(s)	560
SatI	GCNGC	2 cut(s)	126, 349
Sau3AI	GATC	5 cut(s)	174, 202, 264, 319, 472
Sau96I	GGNCC	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	477
SduI	GDGCHC	2 cut(s)	165, 404
SetI	ASST	6 cut(s)	9, 38, 46, 165, 346, 461
SfaNI	GCATC	1 cut(s)	586
SfuI	TTCGAA	1 cut(s)	507
SmiMI	CAYNNNNRTG	2 cut(s)	407, 591
SsiI	CCGC	4 cut(s)	157, 193, 304, 348
SspMI	CTAG	1 cut(s)	368
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	475
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	4 cut(s)	116, 153, 489, 507
TaqII	GACCGA	2 cut(s)	134, 215
TauI	GCSGC	1 cut(s)	351
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	3 cut(s)	353, 396, 473
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	116
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.