Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002154

Physical Location & Seq

Genomic Coordinates Forward (+)

18680030 .. 18681067

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00397050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAGTGGCTTGTTGACGACGATATTGTTGGTACATGAGTGGCTTGTTGACGACGATATTGCTCTAGTTTCAGCTTCTGACATTCTGGGATCGAATAACGGACTCGATCCTTTGGAGCACCAAGGTTGGCTGTCCTACTACACTAATAAGGACATTCTATCCCCACACAATCAACAATGTAGTTGCAGAGATCAGGTTCTAGCTGCACTTAAATCAGTACTAGAAGAATACAAGGATGAAGAAATCAGCATTACTGTCACTGGTCACAGCATGGGTGCTGCAATGGCAACTTTAAACGCAACCGATATTGTCTCTAACGGACACAACAAACCCACAGATCAATCGGACAAGCTGATTCCTGTGACAGCAATTGTGTTTGCCAGCCCCCGACTAGGCGATGACGGATTGGAGAAGGTGTTATCTGGTCTCGAAAATCTTCAAGTCTTGCGTGTCACTAATGACCAAGATATTGTTCCTAAATTACCATATTTGGATGGTAAATATGTTCATGTTGGAAAAGAGTTGAGAATCGACAGTCTCAAGTCTCCCTACTTGAAGGTTATCCCTGAATCAGATAAAGCAGGAAGGCTTGGCAGTTTGCACGATCTGGAGGTTTACTTGCATGGTGTTGCAGGGACACAGGGAATCGAAAGTAACGATTTTAAATTGGAAGTGAATCGTGATCTCGCACTGGTAAACAAATATATTGATCTTCTGAAGGACGAACATAAGGTAGTTGGTAGCTGGTGGACTGAGAAGAACAAGTCTATGATTCAAATGGATGGTGGCTCTTGGGTCTTGGATGATCGTGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

272

Amino Acids

30.06

Weight (kDa)

4.82

Isoelectric Point (pI)

28.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	13 - 164	2.7e-27	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19750 FvH4_5g19760
malus_domestica	MD04G1058700.v1.1
prunus_persica	Prupe.5G062500_v2.0.a1 Prupe.5G062600_v2.0.a1 Prupe.5G062700_v2.0.a1
pyrus_communis	pycom04g05260
rosa_chinensis	RchiOBHm_Chr7g0203651 RchiOBHm_Chr7g0203681 RchiOBHm_Chr7g0204521 RchiOBHm_Chr7g0204541
rosa_laevigata	RLG00000003452 RLG00000003453 RLG00000003512
rosa_multiflora	Rmu_co8274427.1_g000001 Rmu_co8340383.1_g000001 Rmu_sc0005354.1_g000007 Rmu_ssc0000443.1_g000023 Rmu_ssc0000443.1_g000033
rosa_roxburghii	Rroxscaffold_3G00253010 Rroxscaffold_3G00253020 Rroxscaffold_3G00253540 Rroxscaffold_3G00253610 Rroxscaffold_6G00397050 Rroxscaffold_6G00397100
rosa_rugosa	Rorug07G0078000 Rorug07G0084900 Rorug07G0085000
rosa_samantha	Rh7AG207600 Rh7AG214200 Rh7AG214300 Rh7BG206900 Rh7BG211700 Rh7BG211800 Rh7CG219900 Rh7CG227300 Rh7DG214500 Rh7DG214700 Rh7DG221800 Rh7DG222000
rosa_wichuraiana	Rw7G018100 Rw7G018570 Rw7G018580 Rw7G018590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	97, 101
AcuI	CTGAAG	1 cut(s)	737
AfaI	GTAC	2 cut(s)	33, 219
AfiI	CCNNNNNNNGG	1 cut(s)	392
AgsI	TTSAA	3 cut(s)	440, 556, 776
AjuI	GAANNNNNNNTTGG	2 cut(s)	456, 488
AluBI	AGCT	4 cut(s)	74, 203, 352, 744
AluI	AGCT	4 cut(s)	74, 203, 352, 744
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	4 cut(s)	316, 431, 542, 549
AlwI	GGATC	2 cut(s)	97, 101
AlwNI	CAGNNNCTG	1 cut(s)	77
ApeKI	GCWGC	2 cut(s)	203, 278
Asp700I	GAANNNNTTC	1 cut(s)	435
BaeI	ACNNNNGTAYC	2 cut(s)	23, 56
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	190, 265
BccI	CCATC	2 cut(s)	488, 776
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BcoDI	GTCTC	4 cut(s)	316, 431, 542, 549
BfaI	CTAG	4 cut(s)	65, 200, 221, 392
BisI	GCNGC	2 cut(s)	204, 279
BlsI	GCNGC	2 cut(s)	205, 280
BmcAI	AGTACT	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	629
BpuEI	CTTGAG	1 cut(s)	524
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse1I	ACTGG	2 cut(s)	265, 696
Bse3DI	GCAATG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	4 cut(s)	241, 499, 787, 808
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	744
BseNI	ACTGG	2 cut(s)	265, 696
BseXI	GCAGC	2 cut(s)	190, 265
BsgI	GTGCAG	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	649
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmAI	GTCTC	4 cut(s)	316, 431, 542, 549
BsmFI	GGGAC	1 cut(s)	649
Bso31I	GGTCTC	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	8 cut(s)	89, 106, 190, 337, 604, 682, 709, 805
BspCNI	CTCAG	1 cut(s)	745
BspPI	GGATC	2 cut(s)	97, 101
BspTNI	GGTCTC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	2 cut(s)	265, 696
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	8 cut(s)	89, 106, 190, 337, 604, 682, 709, 805
BssT1I	CCWWGG	1 cut(s)	121
Bst4CI	ACNGT	2 cut(s)	256, 536
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	1 cut(s)	753
BstF5I	GGATG	4 cut(s)	241, 499, 787, 808
BstKTI	GATC	8 cut(s)	92, 109, 193, 340, 607, 685, 712, 808
BstMAI	GTCTC	4 cut(s)	316, 431, 542, 549
BstMBI	GATC	8 cut(s)	89, 106, 190, 337, 604, 682, 709, 805
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstV1I	GCAGC	2 cut(s)	190, 265
BtgZI	GCGATG	1 cut(s)	411
BtsCI	GGATG	4 cut(s)	241, 499, 787, 808
BtsIMutI	CAGTG	2 cut(s)	258, 689
Cac8I	GCNNGC	1 cut(s)	382
CaiI	CAGNNNCTG	1 cut(s)	77
Csp6I	GTAC	2 cut(s)	32, 218
CviAII	CATG	4 cut(s)	35, 271, 509, 623
CviQI	GTAC	2 cut(s)	32, 218
DdeI	CTNAG	1 cut(s)	753
DpnI	GATC	8 cut(s)	91, 108, 192, 339, 606, 684, 711, 807
DpnII	GATC	8 cut(s)	89, 106, 190, 337, 604, 682, 709, 805
DraI	TTTAAA	2 cut(s)	294, 664
Eco130I	CCWWGG	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	431
Eco57I	CTGAAG	1 cut(s)	737
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	4 cut(s)	38, 274, 512, 626
FaiI	YATR	9 cut(s)	36, 272, 487, 504, 510, 624, 705, 729, 770
FaqI	GGGAC	1 cut(s)	649
FatI	CATG	4 cut(s)	34, 270, 508, 622
Fnu4HI	GCNGC	2 cut(s)	204, 279
FokI	GGATG	4 cut(s)	248, 506, 794, 815
Fsp4HI	GCNGC	2 cut(s)	204, 279
FspBI	CTAG	4 cut(s)	65, 200, 221, 392
GluI	GCNGC	2 cut(s)	204, 279
GsuI	CTGGAG	1 cut(s)	629
Hin1II	CATG	4 cut(s)	38, 274, 512, 626
HincII	GTYRAC	2 cut(s)	15, 49
HindII	GTYRAC	2 cut(s)	15, 49
HinfI	GANTC	8 cut(s)	102, 355, 528, 569, 645, 676, 772, 812
Hpy166II	GTNNAC	5 cut(s)	15, 49, 616, 697, 750
Hpy188I	TCNGA	4 cut(s)	79, 346, 574, 717
Hpy188III	TCNNGA	5 cut(s)	428, 608, 680, 809, 816
Hpy8I	GTNNAC	5 cut(s)	15, 49, 616, 697, 750
Hpy99I	CGWCG	2 cut(s)	22, 56
HpyAV	CCTTC	4 cut(s)	406, 550, 579, 712
HpyCH4III	ACNGT	2 cut(s)	256, 536
HpyCH4V	TGCA	6 cut(s)	186, 206, 281, 601, 622, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	1 cut(s)	753
Hsp92II	CATG	4 cut(s)	38, 274, 512, 626
Kzo9I	GATC	8 cut(s)	89, 106, 190, 337, 604, 682, 709, 805
LmnI	GCTCC	1 cut(s)	115
Lsp1109I	GCAGC	2 cut(s)	190, 265
MaeI	CTAG	4 cut(s)	65, 200, 221, 392
MaeIII	GTNAC	5 cut(s)	256, 263, 361, 451, 653
MalI	GATC	8 cut(s)	91, 108, 192, 339, 606, 684, 711, 807
MboI	GATC	8 cut(s)	89, 106, 190, 337, 604, 682, 709, 805
MboII	GAAGA	5 cut(s)	236, 251, 428, 704, 769
MfeI	CAATTG	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	3 cut(s)	369, 479, 665
MlyI	GAGTC	1 cut(s)	96
MmeI	TCCRAC	1 cut(s)	493
MnlI	CCTC	1 cut(s)	604
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	3 cut(s)	210, 293, 663
MunI	CAATTG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	284
NdeII	GATC	8 cut(s)	89, 106, 190, 337, 604, 682, 709, 805
NlaIII	CATG	4 cut(s)	38, 274, 512, 626
NmuCI	GTSAC	4 cut(s)	256, 263, 361, 451
PcsI	WCGNNNNNNNCGW	1 cut(s)	654
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	6 cut(s)	355, 528, 569, 645, 676, 772
PkrI	GCNGC	2 cut(s)	205, 280
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
PstNI	CAGNNNCTG	1 cut(s)	77
RsaI	GTAC	2 cut(s)	33, 219
RsaNI	GTAC	2 cut(s)	32, 218
SaqAI	TTAA	3 cut(s)	210, 293, 663
SatI	GCNGC	2 cut(s)	204, 279
Sau3AI	GATC	8 cut(s)	89, 106, 190, 337, 604, 682, 709, 805
ScaI	AGTACT	1 cut(s)	219
SchI	GAGTC	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	3 cut(s)	369, 479, 665
SspMI	CTAG	4 cut(s)	65, 200, 221, 392
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	2 cut(s)	256, 536
TaqI	TCGA	5 cut(s)	92, 105, 429, 531, 648
TasI	AATT	3 cut(s)	369, 479, 665
TatI	WGTACW	1 cut(s)	217
TfiI	GAWTC	6 cut(s)	355, 528, 569, 645, 676, 772
Tru1I	TTAA	3 cut(s)	210, 293, 663
Tru9I	TTAA	3 cut(s)	210, 293, 663
TscAI	CASTG	2 cut(s)	265, 696
TseFI	GTSAC	4 cut(s)	256, 263, 361, 451
TseI	GCWGC	2 cut(s)	203, 278
Tsp45I	GTSAC	4 cut(s)	256, 263, 361, 451
TspDTI	ATGAA	2 cut(s)	252, 497
TspGWI	ACGGA	3 cut(s)	114, 333, 417
TspRI	CASTG	2 cut(s)	265, 696
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	4 cut(s)	65, 200, 221, 392
ZrmI	AGTACT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.