Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004236

Physical Location & Seq

Genomic Coordinates Reverse (-)

28361787 .. 28364273

Gene Structure 2487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g38360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGATGATAGAACTTTGGTGTCTGGAAATGGAGACGAGAAACCACAGTTTCCTCCATTGGCTGGACAAGGTTCTAATTACAATCTGACTTTGGATCGCAATGAGGTTGAAAGCAATTTGGGCAATATGAGCAAGCCTCTAAATACTAGAATGGCACATTTGGATGAGTTTCTTAAAAATGTGATCTCAGTTGATCAAGAAGTGCAGCTGCTGCAACACGCTTCTTCTTCTTGTTCCTCACTACCCACTTCACTATTTCTTGGGAATTTCAATTTGAATGGACCACTAATGAGTACTACTAAGAAGAAAATTACTATCGATGAGGTATGGAAGGAAATTGCTCATCATGATCATCATTCTCTCAATCTCAATTCTGCTGCAGCCCATGATTCTTTGCATCATCAAAGAATGACTACTATTGGGGAGCCAACAACAGAAACAACACCACCTGAACATCTCCTAGTTCGAGCAGGTATCCTAAATGCTCATCAAATGATGCCTATTGATCCAGAAGCCGTGGTATCACAGCAGGCAGATTGGTTTCAGTTCCAAGTTGCTGCTGCTGCTGCTGCTCAGCAAATGACCATGTTGGACTCAAATTTCACGGTTTGTGAGTCAGTGTTTGAGAACTCATCATCAGCTATGAATCTTGATAATTTCTCTGAGAATCATCAAGTGGGTATGTCAATTCCGTTGCCAGAAATATCAGCAGCATCATCATCAGAGTCTCAGGCAACTCATGCCGAGAGGAAGCGCAATTACTCAGATGAAATGAAGGAGAAAAGCATTGAGAGGAGGCAGAAGAGGATGATCAAGAATAGAGAGTCAGCAGCAAGGTCAAGGGCAAGGAAGCAGGCTTATACCAATCAGTTGGAGAGTAAAGTATCTCACCTGGAAAAAATGAATACCTGGCTCAAAAAGCAAAAGGAGGTGGAGATACTCTTATCTTCAAATCCTACTAATTCCATGCCTACATACCAACTTAGGCGCACCAGTTCAGCTTCCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

337

Amino Acids

37.65

Weight (kDa)

6.27

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	263 - 308	1.2e-09	Basic region leucine zipper
bZIP_1	PF00170	265 - 308	5.9e-13	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38350 FvH4_5g38350 FvH4_5g38360
malus_domestica	MD08G1174300.v1.1 MD08G1174400.v1.1 MD15G1361000.v1.1
prunus_persica	Prupe.1G508200_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1
pyrus_communis	pycom08g14950 pycom15g32250
rosa_chinensis	RchiOBHm_Chr7g0240371 RchiOBHm_Chr7g0240381
rosa_laevigata	RLG00000000681 RLG00000000682
rosa_multiflora	Rmu_sc0002676.1_g000010
rosa_roxburghii	Rroxscaffold_3G00220160 Rroxscaffold_3G00220180
rosa_rugosa	Rorug07G0335100 Rorug07G0335200 Rorug07G0335300 Rorug07G0335400
rosa_samantha	Rh7AG489500 Rh7AG489600 Rh7BG462500 Rh7BG462600 Rh7CG505800 Rh7CG505900 Rh7DG473500 Rh7DG473600
rosa_wichuraiana	Rw7G040960 Rw7G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	461
AccB7I	CCANNNNNTGG	1 cut(s)	62
AclWI	GGATC	2 cut(s)	102, 500
AcsI	RAATTY	2 cut(s)	265, 598
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgsI	TTSAA	4 cut(s)	110, 271, 277, 951
AjnI	CCWGG	2 cut(s)	891, 908
AluBI	AGCT	3 cut(s)	208, 641, 1001
AluI	AGCT	3 cut(s)	208, 641, 1001
Alw26I	GTCTC	2 cut(s)	27, 732
AlwI	GGATC	2 cut(s)	102, 500
AlwNI	CAGNNNCTG	1 cut(s)	211
ApoI	RAATTY	2 cut(s)	265, 598
AspLEI	GCGC	2 cut(s)	756, 990
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	881
AvaII	GGWCC	1 cut(s)	281
BarI	GAAGNNNNNNTAC	2 cut(s)	743, 775
BceAI	ACGGC	1 cut(s)	500
BciT130I	CCWGG	2 cut(s)	893, 910
BciVI	GTATCC	1 cut(s)	485
BclI	TGATCA	3 cut(s)	193, 349, 810
BcoDI	GTCTC	2 cut(s)	27, 732
BfaI	CTAG	2 cut(s)	147, 461
BfmI	CTRYAG	1 cut(s)	378
BfuAI	ACCTGC	1 cut(s)	461
BfuI	GTATCC	1 cut(s)	485
BlpI	GCTNAGC	1 cut(s)	573
BmcAI	AGTACT	1 cut(s)	295
Bme1390I	CCNGG	2 cut(s)	893, 910
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	426
BmrFI	CCNGG	2 cut(s)	893, 910
BmsI	GCATC	3 cut(s)	406, 486, 722
BplI	GAGNNNNNCTC	2 cut(s)	121, 153
Bpu1102I	GCTNAGC	1 cut(s)	573
Bsa29I	ATCGAT	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	516
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	993
Bse3DI	GCAATG	1 cut(s)	106
BseBI	CCWGG	2 cut(s)	893, 910
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	516
BseGI	GGATG	3 cut(s)	10, 169, 813
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMI	GCAATG	1 cut(s)	106
BseMII	CTCAG	5 cut(s)	201, 587, 654, 743, 777
BseNI	ACTGG	1 cut(s)	993
BseRI	GAGGAG	1 cut(s)	808
BsgI	GTGCAG	1 cut(s)	224
BshVI	ATCGAT	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	2 cut(s)	27, 732
BsmBI	CGTCTC	1 cut(s)	27
Bsp143I	GATC	6 cut(s)	94, 183, 193, 349, 505, 810
Bsp1720I	GCTNAGC	1 cut(s)	573
BspCNI	CTCAG	5 cut(s)	200, 586, 655, 742, 776
BspDI	ATCGAT	1 cut(s)	318
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	426
BspMAI	CTGCAG	1 cut(s)	382
BspMI	ACCTGC	1 cut(s)	461
BspPI	GGATC	2 cut(s)	102, 500
BsrDI	GCAATG	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	993
BssECI	CCNNGG	1 cut(s)	516
BssMI	GATC	6 cut(s)	94, 183, 193, 349, 505, 810
Bst2UI	CCWGG	2 cut(s)	893, 910
Bst4CI	ACNGT	2 cut(s)	48, 607
Bst6I	CTCTTC	1 cut(s)	797
BstAPI	GCANNNNNTGC	2 cut(s)	211, 740
BstC8I	GCNNGC	3 cut(s)	134, 531, 855
BstDEI	CTNAG	7 cut(s)	187, 300, 573, 663, 729, 763, 983
BstDSI	CCRYGG	1 cut(s)	516
BstF5I	GGATG	3 cut(s)	10, 169, 813
BstHHI	GCGC	2 cut(s)	756, 990
BstKTI	GATC	6 cut(s)	97, 186, 196, 352, 508, 813
BstMAI	GTCTC	2 cut(s)	27, 732
BstMBI	GATC	6 cut(s)	94, 183, 193, 349, 505, 810
BstMWI	GCNNNNNNNGC	8 cut(s)	120, 129, 211, 563, 566, 569, 740, 919
BstNI	CCWGG	2 cut(s)	893, 910
BstSCI	CCNGG	2 cut(s)	891, 908
BstSFI	CTRYAG	1 cut(s)	378
BstXI	CCANNNNNNTGG	1 cut(s)	871
Bsu15I	ATCGAT	1 cut(s)	318
BsuI	GTATCC	1 cut(s)	485
BsuTUI	ATCGAT	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	516
BtsCI	GGATG	3 cut(s)	10, 169, 813
BtsIMutI	CAGTG	1 cut(s)	624
BveI	ACCTGC	1 cut(s)	461
Cac8I	GCNNGC	3 cut(s)	134, 531, 855
CaiI	CAGNNNCTG	1 cut(s)	211
CciI	TCATGA	1 cut(s)	346
CfoI	GCGC	2 cut(s)	756, 990
Cfr13I	GGNCC	1 cut(s)	281
ClaI	ATCGAT	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	294
CviAII	CATG	5 cut(s)	347, 386, 586, 740, 967
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	7 cut(s)	187, 300, 573, 663, 729, 763, 983
DpnI	GATC	6 cut(s)	96, 185, 195, 351, 507, 812
DpnII	GATC	6 cut(s)	94, 183, 193, 349, 505, 810
Eam1104I	CTCTTC	1 cut(s)	797
EarI	CTCTTC	1 cut(s)	797
Eco47I	GGWCC	1 cut(s)	281
EcoRII	CCWGG	2 cut(s)	891, 908
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	5 cut(s)	350, 389, 589, 743, 970
FatI	CATG	5 cut(s)	346, 385, 585, 739, 966
FbaI	TGATCA	3 cut(s)	193, 349, 810
FokI	GGATG	3 cut(s)	17, 176, 820
FspBI	CTAG	2 cut(s)	147, 461
GlaI	GCGC	2 cut(s)	755, 989
HhaI	GCGC	2 cut(s)	756, 990
Hin1II	CATG	5 cut(s)	350, 389, 589, 743, 970
Hin6I	GCGC	2 cut(s)	754, 988
HinP1I	GCGC	2 cut(s)	754, 988
HinfI	GANTC	7 cut(s)	389, 593, 614, 646, 667, 725, 824
HphI	GGTGA	1 cut(s)	881
Hpy188I	TCNGA	4 cut(s)	87, 664, 724, 766
Hpy188III	TCNNGA	6 cut(s)	24, 197, 347, 509, 650, 814
HpyAV	CCTTC	2 cut(s)	325, 769
HpyCH4III	ACNGT	2 cut(s)	48, 607
HpyCH4V	TGCA	4 cut(s)	205, 214, 380, 397
HpyF10VI	GCNNNNNNNGC	8 cut(s)	120, 129, 211, 563, 566, 569, 740, 919
HpyF3I	CTNAG	7 cut(s)	187, 300, 573, 663, 729, 763, 983
Hsp92II	CATG	5 cut(s)	350, 389, 589, 743, 970
HspAI	GCGC	2 cut(s)	754, 988
Ksp22I	TGATCA	3 cut(s)	193, 349, 810
Kzo9I	GATC	6 cut(s)	94, 183, 193, 349, 505, 810
LmnI	GCTCC	1 cut(s)	424
LweI	GCATC	3 cut(s)	406, 486, 722
MaeI	CTAG	2 cut(s)	147, 461
MalI	GATC	6 cut(s)	96, 185, 195, 351, 507, 812
MboI	GATC	6 cut(s)	94, 183, 193, 349, 505, 810
MboII	GAAGA	5 cut(s)	216, 219, 316, 814, 939
MlyI	GAGTC	4 cut(s)	587, 623, 734, 833
MmeI	TCCRAC	2 cut(s)	570, 852
MseI	TTAA	2 cut(s)	174, 1009
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	208
MspR9I	CCNGG	2 cut(s)	893, 910
MvaI	CCWGG	2 cut(s)	893, 910
MwoI	GCNNNNNNNGC	8 cut(s)	120, 129, 211, 563, 566, 569, 740, 919
NdeII	GATC	6 cut(s)	94, 183, 193, 349, 505, 810
NlaIII	CATG	5 cut(s)	350, 389, 589, 743, 970
NlaIV	GGNNCC	1 cut(s)	426
NmeAIII	GCCGAG	1 cut(s)	769
PagI	TCATGA	1 cut(s)	346
PfeI	GAWTC	3 cut(s)	389, 646, 667
PflMI	CCANNNNNTGG	1 cut(s)	62
PleI	GAGTC	4 cut(s)	587, 622, 733, 832
PpsI	GAGTC	4 cut(s)	587, 622, 733, 832
Psp6I	CCWGG	2 cut(s)	891, 908
PspGI	CCWGG	2 cut(s)	891, 908
PspN4I	GGNNCC	1 cut(s)	426
PspPI	GGNCC	1 cut(s)	281
PstI	CTGCAG	1 cut(s)	382
PstNI	CAGNNNCTG	1 cut(s)	211
PvuII	CAGCTG	1 cut(s)	208
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	174, 1009
Sau3AI	GATC	6 cut(s)	94, 183, 193, 349, 505, 810
Sau96I	GGNCC	1 cut(s)	281
ScaI	AGTACT	1 cut(s)	295
SchI	GAGTC	4 cut(s)	587, 623, 734, 833
ScrFI	CCNGG	2 cut(s)	893, 910
SfaNI	GCATC	3 cut(s)	406, 486, 722
SfcI	CTRYAG	1 cut(s)	378
SinI	GGWCC	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	162
SspMI	CTAG	2 cut(s)	147, 461
StyD4I	CCNGG	2 cut(s)	891, 908
TaaI	ACNGT	2 cut(s)	48, 607
TaqI	TCGA	2 cut(s)	318, 466
TatI	WGTACW	1 cut(s)	293
TfiI	GAWTC	3 cut(s)	389, 646, 667
Tru1I	TTAA	2 cut(s)	174, 1009
Tru9I	TTAA	2 cut(s)	174, 1009
TscAI	CASTG	1 cut(s)	624
TspDTI	ATGAA	4 cut(s)	659, 783, 788, 917
TspGWI	ACGGA	1 cut(s)	681
TspRI	CASTG	1 cut(s)	624
Van91I	CCANNNNNTGG	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	281
XapI	RAATTY	2 cut(s)	265, 598
XspI	CTAG	2 cut(s)	147, 461
ZrmI	AGTACT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.