Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004236

Physical Location & Seq

Genomic Coordinates Forward (+)

21197448 .. 21198838

Gene Structure 1391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1174300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGATGACAGGACTTTGGGGTCTGGAAATGGAGGTGAGAGGCCGCAGTTTCCTCCTCTGGCTAATTTGGATGGGGTTCAAAGCCAGCTCGGAAATATAGGCAGCAAGCCCTTGAATGGTATGCATTTTGATGAGTTACTTAAAAATGTGATATCAGCTGATGAAGGGCAGCTGCTACAAAACCCTAATTCTTCCTCTTTTTCCACTTCGTTTTTTCTTGGGAATTTAAATGGAGCATTGAGTAAGAAGAGTGCTGATGAAGTATGGAAGGGGATTTCTCACCATGAGCTTGCCAATTCTGCAGCCAACGAATCGTTGCACCAACGTAATATTAGGGAGACAGCAGCTACACCTGAACATTTTTTAGTTCGCACCGGCGCCATTAACTTAGGAAACCAAAATGCAATGATGAATGCTCAGCCGGTTATGGGTATTGATCCAGCGGTTATGGTGTCGCAGCCGGCAGATTGGTTTCAGTTTCAAGTGTCTGCTGTTCAGCAGCGAATGACAATGCTGGATTCAAATTTCAAGGTTTGTGAATCAGTGTATGATAACTCAACTGTGAATAATTTTAACCAAGTGGGCATGTCAATTCCAATGCCTGCAATATCAGCATCGTCTTCAGAATCTCACGCAACCGCTGAGAAGAAGCGCCATTTTTCTGATGAAATCAAGGAGAAAACGATAGAAAGGAGGCAGAAGCGGATGATCAAGAACCGTGAGTCAGCTGCCAGGTCTAGGGCAAGAAAGCAGGAGGTGGAAATTATCTTATCTTCAAACCCTAATTCTATGCCTAAATACCAACTCCGGCGAACCAGTTCGGCTCCCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

278

Amino Acids

30.59

Weight (kDa)

8.67

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	231 - 252	8.2e-06	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38350 FvH4_5g38350 FvH4_5g38360
malus_domestica	MD08G1174300.v1.1 MD08G1174400.v1.1 MD15G1361000.v1.1
prunus_persica	Prupe.1G508200_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1
pyrus_communis	pycom08g14950 pycom15g32250
rosa_chinensis	RchiOBHm_Chr7g0240371 RchiOBHm_Chr7g0240381
rosa_laevigata	RLG00000000681 RLG00000000682
rosa_multiflora	Rmu_sc0002676.1_g000010
rosa_roxburghii	Rroxscaffold_3G00220160 Rroxscaffold_3G00220180
rosa_rugosa	Rorug07G0335100 Rorug07G0335200 Rorug07G0335300 Rorug07G0335400
rosa_samantha	Rh7AG489500 Rh7AG489600 Rh7BG462500 Rh7BG462600 Rh7CG505800 Rh7CG505900 Rh7DG473500 Rh7DG473600
rosa_wichuraiana	Rw7G040960 Rw7G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	377
AciI	CCGC	4 cut(s)	44, 443, 639, 703
AclWI	GGATC	1 cut(s)	431
AcsI	RAATTY	2 cut(s)	223, 523
AcuI	CTGAAG	1 cut(s)	606
AcyI	GRCGYC	1 cut(s)	378
AfiI	CCNNNNNNNGG	3 cut(s)	116, 428, 738
AgsI	TTSAA	6 cut(s)	80, 115, 482, 522, 529, 777
AjnI	CCWGG	1 cut(s)	731
AluBI	AGCT	6 cut(s)	88, 158, 172, 289, 347, 728
AluI	AGCT	6 cut(s)	88, 158, 172, 289, 347, 728
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	1 cut(s)	431
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	8 cut(s)	102, 169, 172, 302, 344, 457, 499, 728
ApoI	RAATTY	2 cut(s)	223, 523
Asp700I	GAANNNNTTC	1 cut(s)	817
AspLEI	GCGC	2 cut(s)	380, 654
AsuHPI	GGTGA	2 cut(s)	47, 272
BanI	GGYRCC	1 cut(s)	377
BbsI	GAAGAC	1 cut(s)	612
BbvI	GCAGC	8 cut(s)	114, 159, 181, 314, 356, 469, 511, 715
BccI	CCATC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	733
BclI	TGATCA	1 cut(s)	708
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	2 cut(s)	738, 832
BfmI	CTRYAG	1 cut(s)	300
BfoI	RGCGCY	2 cut(s)	381, 655
BisI	GCNGC	9 cut(s)	44, 103, 170, 173, 303, 345, 458, 500, 729
BlpI	GCTNAGC	1 cut(s)	417
BlsI	GCNGC	9 cut(s)	45, 104, 171, 174, 304, 346, 459, 501, 730
Bme1390I	CCNGG	1 cut(s)	733
BmiI	GGNNCC	2 cut(s)	379, 825
BmrFI	CCNGG	1 cut(s)	733
BmsI	GCATC	1 cut(s)	623
BpiI	GAAGAC	1 cut(s)	612
Bpu1102I	GCTNAGC	1 cut(s)	417
BsaHI	GRCGYC	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 428, 738
Bse118I	RCCGGY	3 cut(s)	374, 421, 460
Bse1I	ACTGG	1 cut(s)	816
Bse3DI	GCAATG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	733
BseGI	GGATG	3 cut(s)	10, 76, 711
BseLI	CCNNNNNNNGG	3 cut(s)	116, 428, 738
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	2 cut(s)	431, 633
BseNI	ACTGG	1 cut(s)	816
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	8 cut(s)	114, 159, 181, 314, 356, 469, 511, 715
BshFI	GGCC	1 cut(s)	43
BshNI	GGYRCC	1 cut(s)	377
BsiSI	CCGG	4 cut(s)	375, 422, 461, 808
BslI	CCNNNNNNNGG	3 cut(s)	116, 428, 738
BsmAI	GTCTC	1 cut(s)	332
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	436, 708
Bsp1720I	GCTNAGC	1 cut(s)	417
BspACI	CCGC	4 cut(s)	44, 443, 639, 703
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	2 cut(s)	430, 634
BspLI	GGNNCC	2 cut(s)	379, 825
BspMAI	CTGCAG	1 cut(s)	304
BspPI	GGATC	1 cut(s)	431
BspT107I	GGYRCC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	411
BsrFI	RCCGGY	3 cut(s)	374, 421, 460
BsrI	ACTGG	1 cut(s)	816
BssAI	RCCGGY	3 cut(s)	374, 421, 460
BssMI	GATC	2 cut(s)	436, 708
BssNI	GRCGYC	1 cut(s)	378
Bst2UI	CCWGG	1 cut(s)	733
Bst4CI	ACNGT	2 cut(s)	562, 719
Bst6I	CTCTTC	1 cut(s)	242
BstACI	GRCGYC	1 cut(s)	378
BstC8I	GCNNGC	5 cut(s)	86, 107, 291, 462, 603
BstDEI	CTNAG	3 cut(s)	388, 417, 642
BstF5I	GGATG	3 cut(s)	10, 76, 711
BstH2I	RGCGCY	2 cut(s)	381, 655
BstHHI	GCGC	2 cut(s)	380, 654
BstKTI	GATC	2 cut(s)	439, 711
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	2 cut(s)	436, 708
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 611
BstNI	CCWGG	1 cut(s)	733
BstNSI	RCATGY	1 cut(s)	589
BstSCI	CCNGG	1 cut(s)	731
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	8 cut(s)	114, 159, 181, 314, 356, 469, 511, 715
BstV2I	GAAGAC	1 cut(s)	612
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	3 cut(s)	10, 76, 711
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	5 cut(s)	86, 107, 291, 462, 603
CfoI	GCGC	2 cut(s)	380, 654
Cfr10I	RCCGGY	3 cut(s)	374, 421, 460
CviAII	CATG	2 cut(s)	284, 586
DdeI	CTNAG	3 cut(s)	388, 417, 642
DinI	GGCGCC	1 cut(s)	379
DpnI	GATC	2 cut(s)	438, 710
DpnII	GATC	2 cut(s)	436, 708
DraI	TTTAAA	1 cut(s)	228
DrdI	GACNNNNNNGTC	1 cut(s)	19
DseDI	GACNNNNNNGTC	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Eco32I	GATATC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	606
EcoRII	CCWGG	1 cut(s)	731
EcoRV	GATATC	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	126
EgeI	GGCGCC	1 cut(s)	379
EheI	GGCGCC	1 cut(s)	379
FaeI	CATG	2 cut(s)	287, 589
FaiI	YATR	9 cut(s)	98, 122, 265, 285, 428, 449, 549, 587, 791
FatI	CATG	2 cut(s)	283, 585
FbaI	TGATCA	1 cut(s)	708
Fnu4HI	GCNGC	9 cut(s)	44, 103, 170, 173, 303, 345, 458, 500, 729
FokI	GGATG	3 cut(s)	17, 83, 718
Fsp4HI	GCNGC	9 cut(s)	44, 103, 170, 173, 303, 345, 458, 500, 729
FspBI	CTAG	2 cut(s)	738, 832
GlaI	GCGC	2 cut(s)	379, 653
GluI	GCNGC	9 cut(s)	44, 103, 170, 173, 303, 345, 458, 500, 729
HaeII	RGCGCY	2 cut(s)	381, 655
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	4 cut(s)	375, 422, 461, 808
HhaI	GCGC	2 cut(s)	380, 654
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	2 cut(s)	287, 589
Hin6I	GCGC	2 cut(s)	378, 652
HinP1I	GCGC	2 cut(s)	378, 652
HinfI	GANTC	5 cut(s)	311, 518, 539, 626, 722
HpaII	CCGG	4 cut(s)	375, 422, 461, 808
HphI	GGTGA	2 cut(s)	47, 272
Hpy188I	TCNGA	3 cut(s)	92, 625, 664
Hpy188III	TCNNGA	2 cut(s)	24, 712
HpyAV	CCTTC	2 cut(s)	158, 262
HpyCH4III	ACNGT	2 cut(s)	562, 719
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	5 cut(s)	124, 302, 319, 404, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 611
HpyF3I	CTNAG	3 cut(s)	388, 417, 642
HpySE526I	ACGT	1 cut(s)	325
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	2 cut(s)	287, 589
HspAI	GCGC	2 cut(s)	378, 652
KasI	GGCGCC	1 cut(s)	377
KroI	GCCGGC	1 cut(s)	460
KroNI	GCCGGC	1 cut(s)	462
Ksp22I	TGATCA	1 cut(s)	708
Kzo9I	GATC	2 cut(s)	436, 708
LmnI	GCTCC	2 cut(s)	233, 829
Lsp1109I	GCAGC	8 cut(s)	114, 159, 181, 314, 356, 469, 511, 715
LweI	GCATC	1 cut(s)	623
MaeI	CTAG	2 cut(s)	738, 832
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	135
MalI	GATC	2 cut(s)	438, 710
MboI	GATC	2 cut(s)	436, 708
MboII	GAAGA	5 cut(s)	183, 259, 612, 658, 765
MluCI	AATT	9 cut(s)	64, 187, 223, 295, 523, 568, 591, 762, 784
Mly113I	GGCGCC	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	731
MnlI	CCTC	7 cut(s)	26, 33, 63, 66, 205, 687, 748
Mph1103I	ATGCAT	1 cut(s)	126
MroNI	GCCGGC	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	817
MseI	TTAA	4 cut(s)	141, 227, 384, 573
MslI	CAYNNNNRTG	1 cut(s)	129
MspA1I	CMGCKG	5 cut(s)	158, 172, 443, 641, 728
MspI	CCGG	4 cut(s)	375, 422, 461, 808
MspR9I	CCNGG	1 cut(s)	733
Mva1269I	GAATGC	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	733
MwoI	GCNNNNNNNGC	2 cut(s)	299, 611
NaeI	GCCGGC	1 cut(s)	462
NarI	GGCGCC	1 cut(s)	378
NdeII	GATC	2 cut(s)	436, 708
NgoMIV	GCCGGC	1 cut(s)	460
NlaIII	CATG	2 cut(s)	287, 589
NlaIV	GGNNCC	2 cut(s)	379, 825
NsiI	ATGCAT	1 cut(s)	126
NspI	RCATGY	1 cut(s)	589
PctI	GAATGC	1 cut(s)	418
PdiI	GCCGGC	1 cut(s)	462
PdmI	GAANNNNTTC	1 cut(s)	817
PfeI	GAWTC	4 cut(s)	311, 518, 539, 626
PkrI	GCNGC	9 cut(s)	45, 104, 171, 174, 304, 346, 459, 501, 730
PleI	GAGTC	1 cut(s)	730
PluTI	GGCGCC	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	730
Psp6I	CCWGG	1 cut(s)	731
PspGI	CCWGG	1 cut(s)	731
PspN4I	GGNNCC	2 cut(s)	379, 825
PstI	CTGCAG	1 cut(s)	304
PvuII	CAGCTG	3 cut(s)	158, 172, 728
RseI	CAYNNNNRTG	1 cut(s)	129
SaqAI	TTAA	4 cut(s)	141, 227, 384, 573
SatI	GCNGC	9 cut(s)	44, 103, 170, 173, 303, 345, 458, 500, 729
Sau3AI	GATC	2 cut(s)	436, 708
SchI	GAGTC	1 cut(s)	731
ScrFI	CCNGG	1 cut(s)	733
SfaNI	GCATC	1 cut(s)	623
SfcI	CTRYAG	1 cut(s)	300
SfoI	GGCGCC	1 cut(s)	379
SgrAI	CRCCGGYG	1 cut(s)	374
SmiI	ATTTAAAT	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	129
Sse9I	AATT	9 cut(s)	64, 187, 223, 295, 523, 568, 591, 762, 784
SsiI	CCGC	4 cut(s)	44, 443, 639, 703
SspDI	GGCGCC	1 cut(s)	377
SspI	AATATT	1 cut(s)	331
SspMI	CTAG	2 cut(s)	738, 832
StyD4I	CCNGG	1 cut(s)	731
SwaI	ATTTAAAT	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	562, 719
TaiI	ACGT	1 cut(s)	328
TasI	AATT	9 cut(s)	64, 187, 223, 295, 523, 568, 591, 762, 784
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	4 cut(s)	311, 518, 539, 626
Tru1I	TTAA	4 cut(s)	141, 227, 384, 573
Tru9I	TTAA	4 cut(s)	141, 227, 384, 573
TscAI	CASTG	1 cut(s)	549
TseI	GCWGC	8 cut(s)	102, 169, 172, 302, 344, 457, 499, 728
TspDTI	ATGAA	4 cut(s)	177, 273, 425, 681
TspRI	CASTG	1 cut(s)	549
XapI	RAATTY	2 cut(s)	223, 523
XceI	RCATGY	1 cut(s)	589
XmnI	GAANNNNTTC	1 cut(s)	817
XspI	CTAG	2 cut(s)	738, 832
Zsp2I	ATGCAT	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.