Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004236

Physical Location & Seq

Genomic Coordinates Forward (+)

14415536 .. 14416860

Gene Structure 1325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g14950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAGACCAAAAGCCGTACGTCGACGAGTCGTGGTACTTCTGCTGCCGTTCAACTACTTGAAGCTACGTTTGGTCACTTCTTCTTGCTAACGTGCGCCTGGGATGCTCTTCTTGCGAATCTGCTCACCGCCGCTGCCTTGCTCTCTCTGCCTCAAGATCCTTCTGCGCTCTCAACCACCTGTGGAAAGAAAAGTCACGGAGACGATGAGGGCGAACATTCCAACTCCAAAGCAGTTGATGGTGACGAAGATGGAGACAAAGATAAGATCGGTGATGGCGGCTTTGGAGACACTGAAGAGGAGCTATCTTCGGAAGACGGAGGAGGCGCTGGGGACAATCCTAATCGGAAAAGCAACAATTCCAAAGCCAGCCCTGGAGGAGAAGGCGGAGAAGTAGGCGAAGAAGTAGGCGAAGAAGGTGAAGAGGAAGATGGCAATGAGAATGATCACGACGGTGAGGATGATGGGGATGATGGGGATGAAGGCAATGAAGATGATGACGACAATGACGATGATGATGAGGGTGAGGTCAAGGACGAGGAGGAAATTGTGGACGAGGAGGAACCGGAGGATGATGAAGAAGAGGACGAGGAAGAGGCCCTTCAGCCCCCTAAGAAGAGGAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

22.18

Weight (kDa)

4.05

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38350 FvH4_5g38350 FvH4_5g38360
malus_domestica	MD08G1174300.v1.1 MD08G1174400.v1.1 MD15G1361000.v1.1
prunus_persica	Prupe.1G508200_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1
pyrus_communis	pycom08g14950 pycom15g32250
rosa_chinensis	RchiOBHm_Chr7g0240371 RchiOBHm_Chr7g0240381
rosa_laevigata	RLG00000000681 RLG00000000682
rosa_multiflora	Rmu_sc0002676.1_g000010
rosa_roxburghii	Rroxscaffold_3G00220160 Rroxscaffold_3G00220180
rosa_rugosa	Rorug07G0335100 Rorug07G0335200 Rorug07G0335300 Rorug07G0335400
rosa_samantha	Rh7AG489500 Rh7AG489600 Rh7BG462500 Rh7BG462600 Rh7CG505800 Rh7CG505900 Rh7DG473500 Rh7DG473600
rosa_wichuraiana	Rw7G040960 Rw7G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	23
AciI	CCGC	4 cut(s)	129, 132, 279, 387
AclWI	GGATC	1 cut(s)	152
AcuI	CTGAAG	2 cut(s)	315, 587
AfaI	GTAC	2 cut(s)	19, 37
AgsI	TTSAA	2 cut(s)	53, 62
AjnI	CCWGG	2 cut(s)	98, 373
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AleI	CACNNNNGTG	1 cut(s)	453
AluBI	AGCT	2 cut(s)	65, 304
AluI	AGCT	2 cut(s)	65, 304
Alw26I	GTCTC	3 cut(s)	195, 249, 282
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	1 cut(s)	597
ApeKI	GCWGC	2 cut(s)	44, 134
AspLEI	GCGC	3 cut(s)	98, 169, 329
AspS9I	GGNCC	1 cut(s)	598
AsuHPI	GGTGA	6 cut(s)	118, 254, 284, 431, 467, 536
BbsI	GAAGAC	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	31, 121
BccI	CCATC	6 cut(s)	233, 245, 269, 425, 458, 467
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	2 cut(s)	100, 375
BclI	TGATCA	1 cut(s)	445
BcoDI	GTCTC	3 cut(s)	195, 249, 282
BfoI	RGCGCY	1 cut(s)	330
BisI	GCNGC	4 cut(s)	45, 132, 135, 280
BlsI	GCNGC	4 cut(s)	46, 133, 136, 281
Bme1390I	CCNGG	2 cut(s)	100, 375
BmgT120I	GGNCC	1 cut(s)	598
BmiI	GGNNCC	1 cut(s)	564
BmrFI	CCNGG	2 cut(s)	100, 375
BmsI	GCATC	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	321
BpmI	CTGGAG	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	99, 373
BsaWI	WCCGGW	1 cut(s)	565
Bse3DI	GCAATG	2 cut(s)	442, 493
BseBI	CCWGG	2 cut(s)	100, 375
BseDI	CCNNGG	2 cut(s)	99, 373
BseGI	GGATG	5 cut(s)	109, 466, 475, 484, 577
BseMI	GCAATG	2 cut(s)	442, 493
BseRI	GAGGAG	5 cut(s)	314, 336, 393, 554, 572
BseXI	GCAGC	2 cut(s)	31, 121
BseYI	CCCAGC	1 cut(s)	329
BshFI	GGCC	1 cut(s)	599
BsiSI	CCGG	1 cut(s)	566
BsiWI	CGTACG	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	347
BsmAI	GTCTC	3 cut(s)	195, 249, 282
BsmBI	CGTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	599
Bsp143I	GATC	3 cut(s)	157, 267, 445
BspACI	CCGC	4 cut(s)	129, 132, 279, 387
BspANI	GGCC	1 cut(s)	599
BspLI	GGNNCC	1 cut(s)	564
BspPI	GGATC	1 cut(s)	152
BspQI	GCTCTTC	1 cut(s)	114
BsrDI	GCAATG	2 cut(s)	442, 493
BssECI	CCNNGG	2 cut(s)	99, 373
BssMI	GATC	3 cut(s)	157, 267, 445
Bst2UI	CCWGG	2 cut(s)	100, 375
Bst4CI	ACNGT	1 cut(s)	455
Bst6I	CTCTTC	6 cut(s)	114, 291, 417, 576, 588, 611
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	612
BstF5I	GGATG	5 cut(s)	109, 466, 475, 484, 577
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	3 cut(s)	98, 169, 329
BstKTI	GATC	3 cut(s)	160, 270, 448
BstMAI	GTCTC	3 cut(s)	195, 249, 282
BstMBI	GATC	3 cut(s)	157, 267, 445
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 113, 148
BstNI	CCWGG	2 cut(s)	100, 375
BstSCI	CCNGG	2 cut(s)	98, 373
BstV1I	GCAGC	2 cut(s)	31, 121
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	599
BtsCI	GGATG	5 cut(s)	109, 466, 475, 484, 577
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	370
CfoI	GCGC	3 cut(s)	98, 169, 329
Cfr13I	GGNCC	1 cut(s)	598
Csp6I	GTAC	2 cut(s)	18, 36
CviJI	RGCY	8 cut(s)	15, 65, 282, 304, 368, 372, 599, 607
CviKI_1	RGCY	8 cut(s)	15, 65, 282, 304, 368, 372, 599, 607
CviQI	GTAC	2 cut(s)	18, 36
DdeI	CTNAG	1 cut(s)	612
DpnI	GATC	3 cut(s)	159, 269, 447
DpnII	GATC	3 cut(s)	157, 267, 445
Eam1104I	CTCTTC	6 cut(s)	114, 291, 417, 576, 588, 611
EarI	CTCTTC	6 cut(s)	114, 291, 417, 576, 588, 611
EciI	GGCGGA	1 cut(s)	402
Eco57I	CTGAAG	2 cut(s)	315, 587
EcoO109I	RGGNCCY	1 cut(s)	598
EcoRII	CCWGG	2 cut(s)	98, 373
Esp3I	CGTCTC	1 cut(s)	195
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FaqI	GGGAC	1 cut(s)	347
FbaI	TGATCA	1 cut(s)	445
FblI	GTMKAC	1 cut(s)	23
Fnu4HI	GCNGC	4 cut(s)	45, 132, 135, 280
FokI	GGATG	5 cut(s)	116, 473, 482, 491, 584
Fsp4HI	GCNGC	4 cut(s)	45, 132, 135, 280
GlaI	GCGC	3 cut(s)	97, 168, 328
GluI	GCNGC	4 cut(s)	45, 132, 135, 280
GsaI	CCCAGC	1 cut(s)	333
GsuI	CTGGAG	1 cut(s)	396
HaeII	RGCGCY	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	599
HapII	CCGG	1 cut(s)	566
HhaI	GCGC	3 cut(s)	98, 169, 329
Hin6I	GCGC	3 cut(s)	96, 167, 327
HinP1I	GCGC	3 cut(s)	96, 167, 327
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	2 cut(s)	28, 118
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	6 cut(s)	118, 254, 284, 431, 467, 536
Hpy166II	GTNNAC	2 cut(s)	24, 553
Hpy188I	TCNGA	2 cut(s)	313, 348
Hpy188III	TCNNGA	2 cut(s)	155, 449
Hpy8I	GTNNAC	2 cut(s)	24, 553
Hpy99I	CGWCG	3 cut(s)	25, 28, 455
HpyAV	CCTTC	5 cut(s)	171, 377, 410, 476, 611
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4IV	ACGT	3 cut(s)	20, 68, 92
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 113, 148
HpyF3I	CTNAG	1 cut(s)	612
HpySE526I	ACGT	3 cut(s)	20, 68, 92
HspAI	GCGC	3 cut(s)	96, 167, 327
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	3 cut(s)	157, 267, 445
LguI	GCTCTTC	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	8 cut(s)	85, 112, 193, 315, 360, 382, 387, 579
Lsp1109I	GCAGC	2 cut(s)	31, 121
LweI	GCATC	1 cut(s)	94
MaeII	ACGT	3 cut(s)	20, 68, 92
MaeIII	GTNAC	3 cut(s)	74, 194, 242
MalI	GATC	3 cut(s)	159, 269, 447
MboI	GATC	3 cut(s)	157, 267, 445
MflI	RGATCY	1 cut(s)	157
MluCI	AATT	2 cut(s)	358, 546
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	1 cut(s)	566
MspR9I	CCNGG	2 cut(s)	100, 375
MvaI	CCWGG	2 cut(s)	100, 375
MwoI	GCNNNNNNNGC	3 cut(s)	104, 113, 148
NdeII	GATC	3 cut(s)	157, 267, 445
NlaIV	GGNNCC	1 cut(s)	564
NmuCI	GTSAC	3 cut(s)	74, 194, 242
OliI	CACNNNNGTG	1 cut(s)	453
PciSI	GCTCTTC	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 507
PfeI	GAWTC	1 cut(s)	118
Pfl23II	CGTACG	1 cut(s)	17
PkrI	GCNGC	4 cut(s)	46, 133, 136, 281
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	98, 373
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	2 cut(s)	98, 373
PspLI	CGTACG	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	564
PspPI	GGNCC	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	2 cut(s)	19, 37
RsaNI	GTAC	2 cut(s)	18, 36
RseI	CAYNNNNRTG	1 cut(s)	453
SalI	GTCGAC	1 cut(s)	22
SapI	GCTCTTC	1 cut(s)	114
SatI	GCNGC	4 cut(s)	45, 132, 135, 280
Sau3AI	GATC	3 cut(s)	157, 267, 445
Sau96I	GGNCC	1 cut(s)	598
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	2 cut(s)	100, 375
SetI	ASST	8 cut(s)	23, 67, 71, 95, 182, 306, 421, 531
SfaNI	GCATC	1 cut(s)	94
SgrDI	CGTCGACG	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	2 cut(s)	358, 546
SsiI	CCGC	4 cut(s)	129, 132, 279, 387
StyD4I	CCNGG	2 cut(s)	98, 373
TaaI	ACNGT	1 cut(s)	455
TaiI	ACGT	3 cut(s)	23, 71, 95
TaqI	TCGA	1 cut(s)	23
TasI	AATT	2 cut(s)	358, 546
TauI	GCSGC	2 cut(s)	134, 282
TfiI	GAWTC	1 cut(s)	118
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	3 cut(s)	74, 194, 242
TseI	GCWGC	2 cut(s)	44, 134
Tsp45I	GTSAC	3 cut(s)	74, 194, 242
TspDTI	ATGAA	3 cut(s)	495, 504, 591
TspGWI	ACGGA	2 cut(s)	213, 333
TspRI	CASTG	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.