Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004236

Physical Location & Seq

Genomic Coordinates Forward (+)

36788435 .. 36789106

Gene Structure 672 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0335400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGGAACTCCTTACCCAAACCCCATAACTCCTTCTCAGACCCGCATTGGCTGGATCGGCATTGGCCTCATGGGCGCTCCTATGGCCTCTCGCCTCATCTCAGCCGGCTACTCCCTCACTATCTATGCTCGCACTCCTTCCAAAGCTCTTTCACTACAATCCCAAGGTGCCCTCCTAGCCCAATCCCCTTTCGAAGTTGCTCAACGTAGTGATGTTGTCTTCACCATAGTGGGACACCCACCAGATGTACGACAAGTTATCTTGGAGGCAAACGGCATCCTTTCAGGCCTAAACCCGAACGGCGTCACGGTGGACATGACCACTAATCTACCAGCCTTGGCACGTGAGATATCATCAGCTGTGCGTGCGAAGGATTGTTGGGCAGTTGACGCCCCAGTCTCCGGGGCAGATGTTGGCGCCAGAGAAGGGAAACTTGGAATATTTGCAGGCGGTGATGCTGGAGTCGTCGAGTGGTTAACACCATTGTTTGATATCATGGGAAAGGTTACGTATATGGGTGAAGCAGGGTGCGGCCAGAGCTGCAAGATAGCGAATAACATTGTGGGAGGGGTGAGTTTTGTCGGGTTGAGTGAAGGTTTGGTGTTTGCAGAGAGAGCTGGCTTGGATTTGAAGCAGTTTTTGGAAGCAGTGAGAGGAGGGGCGGCAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

223

Amino Acids

23.0

Weight (kDa)

5.42

Isoelectric Point (pI)

33.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	15 - 173	1.4e-44	NAD binding domain of 6-phosphogluconate dehydrogenase
F420_oxidored	PF03807	15 - 90	1.8e-07	NADP oxidoreductase coenzyme F420-dependent
NAD_binding_11	PF14833	176 - 222	4.5e-11	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38350 FvH4_5g38350 FvH4_5g38360
malus_domestica	MD08G1174300.v1.1 MD08G1174400.v1.1 MD15G1361000.v1.1
prunus_persica	Prupe.1G508200_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1
pyrus_communis	pycom08g14950 pycom15g32250
rosa_chinensis	RchiOBHm_Chr7g0240371 RchiOBHm_Chr7g0240381
rosa_laevigata	RLG00000000681 RLG00000000682
rosa_multiflora	Rmu_sc0002676.1_g000010
rosa_roxburghii	Rroxscaffold_3G00220160 Rroxscaffold_3G00220180
rosa_rugosa	Rorug07G0335100 Rorug07G0335200 Rorug07G0335300 Rorug07G0335400
rosa_samantha	Rh7AG489500 Rh7AG489600 Rh7BG462500 Rh7BG462600 Rh7CG505800 Rh7CG505900 Rh7DG473500 Rh7DG473600
rosa_wichuraiana	Rw7G040960 Rw7G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	395
AccB1I	GGYRCC	2 cut(s)	167, 416
AciI	CCGC	4 cut(s)	43, 450, 531, 662
AclWI	GGATC	1 cut(s)	62
AcoI	YGGCCR	1 cut(s)	532
AcvI	CACGTG	1 cut(s)	344
AcyI	GRCGYC	3 cut(s)	303, 390, 417
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	401, 426
AgsI	TTSAA	1 cut(s)	631
AjuI	GAANNNNNNNTTGG	4 cut(s)	417, 449, 623, 655
AleI	CACNNNNGTG	1 cut(s)	227
AluBI	AGCT	4 cut(s)	146, 359, 540, 617
AluI	AGCT	4 cut(s)	146, 359, 540, 617
Alw26I	GTCTC	1 cut(s)	403
AlwI	GGATC	1 cut(s)	62
AoxI	GGCC	4 cut(s)	64, 84, 286, 532
ApeKI	GCWGC	1 cut(s)	540
AspLEI	GCGC	2 cut(s)	77, 419
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	4 cut(s)	214, 464, 530, 583
AsuII	TTCGAA	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	172
BanI	GGYRCC	2 cut(s)	167, 416
BbrPI	CACGTG	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	527
BceAI	ACGGC	2 cut(s)	289, 316
BcnI	CCSGG	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	403
BfaI	CTAG	1 cut(s)	176
BfoI	RGCGCY	2 cut(s)	78, 420
BglI	GCCNNNNNGGC	1 cut(s)	72
BisI	GCNGC	3 cut(s)	532, 541, 663
BlsI	GCNGC	3 cut(s)	533, 542, 664
Bme1390I	CCNGG	1 cut(s)	403
BmiI	GGNNCC	2 cut(s)	169, 418
BmrFI	CCNGG	1 cut(s)	403
BmrI	ACTGGG	1 cut(s)	389
BmsI	GCATC	2 cut(s)	285, 445
BmuI	ACTGGG	1 cut(s)	389
BpiI	GAAGAC	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	480
Bpu14I	TTCGAA	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	403
BsaAI	YACGTR	2 cut(s)	344, 510
BsaHI	GRCGYC	3 cut(s)	303, 390, 417
BsaJI	CCNNGG	3 cut(s)	163, 336, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 426
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	395
BseDI	CCNNGG	3 cut(s)	163, 336, 402
BseGI	GGATG	1 cut(s)	276
BseLI	CCNNNNNNNGG	2 cut(s)	401, 426
BseMII	CTCAG	2 cut(s)	50, 114
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	669
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	527
BshFI	GGCC	4 cut(s)	66, 86, 288, 534
BshNI	GGYRCC	2 cut(s)	167, 416
BsiSI	CCGG	2 cut(s)	105, 402
BslFI	GGGAC	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	401, 426
BsmAI	GTCTC	1 cut(s)	403
BsmFI	GGGAC	1 cut(s)	246
BsnI	GGCC	4 cut(s)	66, 86, 288, 534
Bsp119I	TTCGAA	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	4 cut(s)	43, 450, 531, 662
BspANI	GGCC	4 cut(s)	66, 86, 288, 534
BspCNI	CTCAG	2 cut(s)	49, 113
BspLI	GGNNCC	2 cut(s)	169, 418
BspPI	GGATC	1 cut(s)	62
BspT104I	TTCGAA	1 cut(s)	192
BspT107I	GGYRCC	2 cut(s)	167, 416
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	395
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	3 cut(s)	163, 336, 402
BssMI	GATC	1 cut(s)	54
BssNI	GRCGYC	3 cut(s)	303, 390, 417
BssT1I	CCWWGG	2 cut(s)	163, 336
Bst4CI	ACNGT	1 cut(s)	310
BstACI	GRCGYC	3 cut(s)	303, 390, 417
BstBAI	YACGTR	2 cut(s)	344, 510
BstBI	TTCGAA	1 cut(s)	192
BstC8I	GCNNGC	5 cut(s)	106, 130, 366, 448, 619
BstDEI	CTNAG	2 cut(s)	36, 100
BstF5I	GGATG	1 cut(s)	276
BstH2I	RGCGCY	2 cut(s)	78, 420
BstHHI	GCGC	2 cut(s)	77, 419
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	1 cut(s)	403
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	9 cut(s)	57, 72, 83, 176, 365, 389, 537, 540, 614
BstSCI	CCNGG	1 cut(s)	401
BstSLI	GKGCMC	1 cut(s)	172
BstSNI	TACGTA	1 cut(s)	510
BstV1I	GCAGC	1 cut(s)	527
BstV2I	GAAGAC	1 cut(s)	211
BsuRI	GGCC	4 cut(s)	66, 86, 288, 534
BtsCI	GGATG	1 cut(s)	276
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	1 cut(s)	654
Cac8I	GCNNGC	5 cut(s)	106, 130, 366, 448, 619
CfoI	GCGC	2 cut(s)	77, 419
Cfr10I	RCCGGY	1 cut(s)	104
CseI	GACGC	2 cut(s)	292, 398
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	3 cut(s)	70, 316, 496
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	2 cut(s)	36, 100
DinI	GGCGCC	1 cut(s)	418
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
DrdI	GACNNNNNNGTC	1 cut(s)	395
DseDI	GACNNNNNNGTC	1 cut(s)	395
EaeI	YGGCCR	1 cut(s)	532
Eco105I	TACGTA	1 cut(s)	510
Eco130I	CCWWGG	2 cut(s)	163, 336
Eco147I	AGGCCT	1 cut(s)	288
Eco32I	GATATC	2 cut(s)	351, 493
Eco72I	CACGTG	1 cut(s)	344
EcoRV	GATATC	2 cut(s)	351, 493
EcoT14I	CCWWGG	2 cut(s)	163, 336
EgeI	GGCGCC	1 cut(s)	418
EheI	GGCGCC	1 cut(s)	418
ErhI	CCWWGG	2 cut(s)	163, 336
FaeI	CATG	3 cut(s)	73, 319, 499
FaiI	YATR	9 cut(s)	26, 71, 83, 126, 227, 317, 497, 513, 515
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	3 cut(s)	69, 315, 495
FauI	CCCGC	1 cut(s)	50
Fnu4HI	GCNGC	3 cut(s)	532, 541, 663
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	3 cut(s)	532, 541, 663
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	2 cut(s)	76, 418
GluI	GCNGC	3 cut(s)	532, 541, 663
GsuI	CTGGAG	1 cut(s)	480
HaeII	RGCGCY	2 cut(s)	78, 420
HaeIII	GGCC	4 cut(s)	66, 86, 288, 534
HapII	CCGG	2 cut(s)	105, 402
HgaI	GACGC	2 cut(s)	292, 398
HhaI	GCGC	2 cut(s)	77, 419
Hin1I	GRCGYC	3 cut(s)	303, 390, 417
Hin1II	CATG	3 cut(s)	73, 319, 499
Hin6I	GCGC	2 cut(s)	75, 417
HinP1I	GCGC	2 cut(s)	75, 417
HincII	GTYRAC	2 cut(s)	388, 477
HindII	GTYRAC	2 cut(s)	388, 477
HinfI	GANTC	1 cut(s)	462
HpaI	GTTAAC	1 cut(s)	477
HpaII	CCGG	2 cut(s)	105, 402
HphI	GGTGA	4 cut(s)	214, 464, 530, 583
Hpy166II	GTNNAC	3 cut(s)	313, 388, 477
Hpy188I	TCNGA	1 cut(s)	39
Hpy8I	GTNNAC	3 cut(s)	313, 388, 477
Hpy99I	CGWCG	1 cut(s)	470
HpyAV	CCTTC	5 cut(s)	42, 147, 364, 419, 587
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	3 cut(s)	205, 343, 509
HpyCH4V	TGCA	3 cut(s)	446, 543, 608
HpyF10VI	GCNNNNNNNGC	9 cut(s)	57, 72, 83, 176, 365, 389, 537, 540, 614
HpyF3I	CTNAG	2 cut(s)	36, 100
HpySE526I	ACGT	3 cut(s)	205, 343, 509
Hsp92I	GRCGYC	3 cut(s)	303, 390, 417
Hsp92II	CATG	3 cut(s)	73, 319, 499
HspAI	GCGC	2 cut(s)	75, 417
KasI	GGCGCC	1 cut(s)	416
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
KspAI	GTTAAC	1 cut(s)	477
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	82
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	2 cut(s)	285, 445
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	3 cut(s)	205, 343, 509
MaeIII	GTNAC	2 cut(s)	304, 505
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	172
Mly113I	GGCGCC	1 cut(s)	417
MlyI	GAGTC	1 cut(s)	471
MnlI	CCTC	9 cut(s)	77, 97, 104, 125, 182, 259, 560, 647, 650
MroNI	GCCGGC	1 cut(s)	104
MseI	TTAA	1 cut(s)	476
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	2 cut(s)	105, 402
MspR9I	CCNGG	1 cut(s)	403
MwoI	GCNNNNNNNGC	9 cut(s)	57, 72, 83, 176, 365, 389, 537, 540, 614
NaeI	GCCGGC	1 cut(s)	106
NarI	GGCGCC	1 cut(s)	417
NciI	CCSGG	1 cut(s)	403
NdeII	GATC	1 cut(s)	54
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	3 cut(s)	73, 319, 499
NlaIV	GGNNCC	2 cut(s)	169, 418
NmuCI	GTSAC	1 cut(s)	304
NspV	TTCGAA	1 cut(s)	192
OliI	CACNNNNGTG	1 cut(s)	227
PceI	AGGCCT	1 cut(s)	288
PdiI	GCCGGC	1 cut(s)	106
PkrI	GCNGC	3 cut(s)	533, 542, 664
PleI	GAGTC	1 cut(s)	470
PluTI	GGCGCC	1 cut(s)	420
PmaCI	CACGTG	1 cut(s)	344
PmlI	CACGTG	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	470
Ppu21I	YACGTR	2 cut(s)	344, 510
PspCI	CACGTG	1 cut(s)	344
PspN4I	GGNNCC	2 cut(s)	169, 418
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	476
SatI	GCNGC	3 cut(s)	532, 541, 663
Sau3AI	GATC	1 cut(s)	54
SchI	GAGTC	1 cut(s)	471
ScrFI	CCNGG	1 cut(s)	403
SduI	GDGCHC	1 cut(s)	172
SfaNI	GCATC	2 cut(s)	285, 445
SfoI	GGCGCC	1 cut(s)	418
SfuI	TTCGAA	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	227
SnaBI	TACGTA	1 cut(s)	510
SseBI	AGGCCT	1 cut(s)	288
SsiI	CCGC	4 cut(s)	43, 450, 531, 662
SspDI	GGCGCC	1 cut(s)	416
SspI	AATATT	1 cut(s)	441
SspMI	CTAG	1 cut(s)	176
StuI	AGGCCT	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	401
StyI	CCWWGG	2 cut(s)	163, 336
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	3 cut(s)	208, 346, 512
TaqI	TCGA	2 cut(s)	192, 468
TauI	GCSGC	2 cut(s)	534, 665
Tru1I	TTAA	1 cut(s)	476
Tru9I	TTAA	1 cut(s)	476
TscAI	CASTG	1 cut(s)	654
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	540
Tsp45I	GTSAC	1 cut(s)	304
TspRI	CASTG	1 cut(s)	654
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.