Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004236

Physical Location & Seq

Genomic Coordinates Reverse (-)

36781927 .. 36782175

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0335300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGTTCAGTTACTAGCAACTCTGCTGCTAGTGGCTTTCTTATATATCCAAGATTTCAATGACAAAGTGCTTATTGCTGGGGCAAAAAGAATTGGTTCAACCACTGTTTTTGTTGCAGAAACTATCGCCCTGCGTGATAACCTTAATAGTGGATATCAGAAAGGCTACAGACTCATTCAAGCTGAAGGTAACTCAAAAATGATATTTATGCTGTCAAAGGTGAGTTCACACCGCCATGGAGAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

82

Amino Acids

9.13

Weight (kDa)

9.52

Isoelectric Point (pI)

13.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0004236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38350 FvH4_5g38350 FvH4_5g38360
malus_domestica	MD08G1174300.v1.1 MD08G1174400.v1.1 MD15G1361000.v1.1
prunus_persica	Prupe.1G508200_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1
pyrus_communis	pycom08g14950 pycom15g32250
rosa_chinensis	RchiOBHm_Chr7g0240371 RchiOBHm_Chr7g0240381
rosa_laevigata	RLG00000000681 RLG00000000682
rosa_multiflora	Rmu_sc0002676.1_g000010
rosa_roxburghii	Rroxscaffold_3G00220160 Rroxscaffold_3G00220180
rosa_rugosa	Rorug07G0335100 Rorug07G0335200 Rorug07G0335300 Rorug07G0335400
rosa_samantha	Rh7AG489500 Rh7AG489600 Rh7BG462500 Rh7BG462600 Rh7CG505800 Rh7CG505900 Rh7DG473500 Rh7DG473600
rosa_wichuraiana	Rw7G040960 Rw7G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	232
AcuI	CTGAAG	1 cut(s)	204
AgsI	TTSAA	3 cut(s)	58, 99, 179
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	25
Asp700I	GAANNNNTTC	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	12
BfaI	CTAG	2 cut(s)	14, 29
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	12
BseYI	CCCAGC	1 cut(s)	77
Bsp19I	CCATGG	1 cut(s)	235
BspACI	CCGC	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	235
BssT1I	CCWWGG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	106
BstDSI	CCRYGG	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	12
BtgI	CCRYGG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	102
CspCI	CAANNNNNGTGG	2 cut(s)	91, 126
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	3 cut(s)	35, 165, 182
CviKI_1	RGCY	3 cut(s)	35, 165, 182
Eco130I	CCWWGG	1 cut(s)	235
Eco32I	GATATC	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	204
EcoRV	GATATC	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	1 cut(s)	239
FaiI	YATR	5 cut(s)	43, 45, 209, 237, 247
FatI	CATG	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	2 cut(s)	14, 29
GluI	GCNGC	1 cut(s)	26
GsaI	CCCAGC	1 cut(s)	81
Hin1II	CATG	1 cut(s)	239
HinfI	GANTC	1 cut(s)	171
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	1 cut(s)	159
Hpy8I	GTNNAC	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	116
Hsp92II	CATG	1 cut(s)	239
LpnPI	CCDG	2 cut(s)	63, 143
Lsp1109I	GCAGC	1 cut(s)	12
MaeI	CTAG	2 cut(s)	14, 29
MaeIII	GTNAC	2 cut(s)	9, 188
MluCI	AATT	2 cut(s)	90, 242
MlyI	GAGTC	1 cut(s)	165
MroXI	GAANNNNTTC	1 cut(s)	94
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	234
NcoI	CCATGG	1 cut(s)	235
NlaIII	CATG	1 cut(s)	239
PdmI	GAANNNNTTC	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	27
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	77
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	1 cut(s)	26
SchI	GAGTC	1 cut(s)	165
SetI	ASST	4 cut(s)	144, 184, 190, 222
SfcI	CTRYAG	1 cut(s)	166
SgeI	CNNG	7 cut(s)	26, 41, 62, 90, 142, 146, 191
SmiMI	CAYNNNNRTG	1 cut(s)	234
Sse9I	AATT	2 cut(s)	90, 242
SsiI	CCGC	1 cut(s)	232
SspMI	CTAG	2 cut(s)	14, 29
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	106
TasI	AATT	2 cut(s)	90, 242
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	1 cut(s)	109
TseI	GCWGC	1 cut(s)	25
TspRI	CASTG	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	94
XspI	CTAG	2 cut(s)	14, 29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.