Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004236

Physical Location & Seq

Genomic Coordinates Forward (+)

43457117 .. 43459997

Gene Structure 2881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1361000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAGACCAAAAGGCGTACGTCGTCGAGTAGTGGTGGTGCTGCTGTCGTTCAACTAGTCGAAGCTACGTTTGGTCAGCTCTTGCTGCTAACGTGCGCCTGGGATGCTCTTCTTGCTAATCTGCTCACCGCCTCTGCCTTGCTTTCTTTCGCTCAGGATCCTTTCGTGCTCTCAGCAACTTGTGGACAGAAAAGTCATGGAGACAATGAGAGTGAGCATTCCAACTCCGAAGCAGTTGATGGGGACGAAGATGGAGACGAAGAGAAGAACAATGACGGTGGCTTTGGAGACACTGAAGAGGAGCTATCTTCGGAAGATGGAGGCGCTGGGAACAACCCTAATGGGAAAAGCAACAACTCCAAAGCCGGGCCCGGAGGAGAGGATGGCGAAGTAGGCGAAGTAGGCGAAGTAGGCGAAGATGGTGAAGAGGAGGAAGATGGCAATAATCGCGACGACAATGAGGATGATGGCGAGGATGATGGAGATGAAGACAATGAAGATGATGAGGACGACGAGGACGATGATGAAGGCGAGGTCAAGGACGAGGAGGAAATTGTGGACGAGGAGGAACCCGAGGACGATGAAGAAGAGGACGAGGAAGAGGCCCTTCAGCCCCCAAAGAAGAGGAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

22.53

Weight (kDa)

4.05

Isoelectric Point (pI)

57.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38350 FvH4_5g38350 FvH4_5g38360
malus_domestica	MD08G1174300.v1.1 MD08G1174400.v1.1 MD15G1361000.v1.1
prunus_persica	Prupe.1G508200_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1
pyrus_communis	pycom08g14950 pycom15g32250
rosa_chinensis	RchiOBHm_Chr7g0240371 RchiOBHm_Chr7g0240381
rosa_laevigata	RLG00000000681 RLG00000000682
rosa_multiflora	Rmu_sc0002676.1_g000010
rosa_roxburghii	Rroxscaffold_3G00220160 Rroxscaffold_3G00220180
rosa_rugosa	Rorug07G0335100 Rorug07G0335200 Rorug07G0335300 Rorug07G0335400
rosa_samantha	Rh7AG489500 Rh7AG489600 Rh7BG462500 Rh7BG462600 Rh7CG505800 Rh7CG505900 Rh7DG473500 Rh7DG473600
rosa_wichuraiana	Rw7G040960 Rw7G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	192
AccII	CGCG	1 cut(s)	450
AciI	CCGC	1 cut(s)	129
AclWI	GGATC	2 cut(s)	152, 165
AcuI	CTGAAG	2 cut(s)	315, 593
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	1 cut(s)	366
AgsI	TTSAA	1 cut(s)	53
AhlI	ACTAGT	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	98
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AluBI	AGCT	3 cut(s)	65, 79, 304
AluI	AGCT	3 cut(s)	65, 79, 304
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	3 cut(s)	195, 249, 282
AlwI	GGATC	2 cut(s)	152, 165
Ama87I	CYCGRG	1 cut(s)	572
AoxI	GGCC	2 cut(s)	368, 603
ApaI	GGGCCC	1 cut(s)	372
ApeKI	GCWGC	2 cut(s)	41, 85
ArsI	GACNNNNNNTTYG	2 cut(s)	266, 298
AspLEI	GCGC	2 cut(s)	98, 326
AspS9I	GGNCC	3 cut(s)	368, 369, 604
AsuC2I	CCSGG	2 cut(s)	367, 372
AsuHPI	GGTGA	2 cut(s)	118, 434
AvaI	CYCGRG	1 cut(s)	572
BaeGI	GKGCMC	1 cut(s)	372
BamHI	GGATCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	495
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	28, 72
BccI	CCATC	8 cut(s)	233, 245, 311, 377, 413, 431, 461, 473
BciT130I	CCWGG	1 cut(s)	100
BcnI	CCSGG	2 cut(s)	367, 372
BcoDI	GTCTC	3 cut(s)	195, 249, 282
BcuI	ACTAGT	1 cut(s)	55
BfaI	CTAG	1 cut(s)	56
BfoI	RGCGCY	1 cut(s)	327
BisI	GCNGC	2 cut(s)	42, 86
BlsI	GCNGC	2 cut(s)	43, 87
Bme1390I	CCNGG	3 cut(s)	100, 367, 372
BmeT110I	CYCGRG	1 cut(s)	572
BmgT120I	GGNCC	3 cut(s)	368, 369, 604
BmiI	GGNNCC	3 cut(s)	159, 370, 570
BmrFI	CCNGG	3 cut(s)	100, 367, 372
BmsI	GCATC	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	495
Bpu10I	CCTNAGC	1 cut(s)	153
BpuMI	CCSGG	2 cut(s)	367, 372
BsaJI	CCNNGG	2 cut(s)	99, 573
Bsc4I	CCNNNNNNNGG	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	2 cut(s)	99, 573
BseGI	GGATG	4 cut(s)	109, 388, 469, 481
BseLI	CCNNNNNNNGG	1 cut(s)	366
BseMII	CTCAG	2 cut(s)	167, 186
BseRI	GAGGAG	5 cut(s)	314, 390, 443, 560, 578
BseSI	GKGCMC	1 cut(s)	372
BseXI	GCAGC	2 cut(s)	28, 72
BseYI	CCCAGC	1 cut(s)	326
Bsh1236I	CGCG	1 cut(s)	450
BshFI	GGCC	2 cut(s)	370, 605
BsiHKAI	GWGCWC	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	572
BsiSI	CCGG	2 cut(s)	366, 372
BsiWI	CGTACG	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	366
BsmAI	GTCTC	3 cut(s)	195, 249, 282
BsmBI	CGTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	257
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	2 cut(s)	370, 605
BsoBI	CYCGRG	1 cut(s)	572
Bsp120I	GGGCCC	1 cut(s)	368
Bsp1286I	GDGCHC	2 cut(s)	171, 372
Bsp143I	GATC	1 cut(s)	157
Bsp68I	TCGCGA	1 cut(s)	450
BspACI	CCGC	1 cut(s)	129
BspANI	GGCC	2 cut(s)	370, 605
BspCNI	CTCAG	2 cut(s)	166, 185
BspFNI	CGCG	1 cut(s)	450
BspLI	GGNNCC	3 cut(s)	159, 370, 570
BspPI	GGATC	2 cut(s)	152, 165
BspQI	GCTCTTC	1 cut(s)	114
BssECI	CCNNGG	2 cut(s)	99, 573
BssMI	GATC	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	7 cut(s)	114, 255, 291, 420, 582, 594, 617
BstDEI	CTNAG	2 cut(s)	153, 172
BstF5I	GGATG	4 cut(s)	109, 388, 469, 481
BstFNI	CGCG	1 cut(s)	450
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	2 cut(s)	98, 326
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	3 cut(s)	195, 249, 282
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	7 cut(s)	85, 104, 113, 393, 402, 411, 447
BstNI	CCWGG	1 cut(s)	100
BstSCI	CCNGG	3 cut(s)	98, 365, 370
BstSLI	GKGCMC	1 cut(s)	372
BstUI	CGCG	1 cut(s)	450
BstV1I	GCAGC	2 cut(s)	28, 72
BstV2I	GAAGAC	1 cut(s)	495
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	370, 605
BtsCI	GGATG	4 cut(s)	109, 388, 469, 481
BtsIMutI	CAGTG	1 cut(s)	291
BtuMI	TCGCGA	1 cut(s)	450
CfoI	GCGC	2 cut(s)	98, 326
Cfr13I	GGNCC	3 cut(s)	368, 369, 604
Csp6I	GTAC	1 cut(s)	18
CspCI	CAANNNNNGTGG	2 cut(s)	259, 294
CviAII	CATG	1 cut(s)	197
CviJI	RGCY	8 cut(s)	65, 79, 282, 304, 365, 370, 605, 613
CviKI_1	RGCY	8 cut(s)	65, 79, 282, 304, 365, 370, 605, 613
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	2 cut(s)	153, 172
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
DrdI	GACNNNNNNGTC	1 cut(s)	192
DseDI	GACNNNNNNGTC	1 cut(s)	192
Eam1104I	CTCTTC	7 cut(s)	114, 255, 291, 420, 582, 594, 617
EarI	CTCTTC	7 cut(s)	114, 255, 291, 420, 582, 594, 617
Eco24I	GRGCYC	1 cut(s)	372
Eco57I	CTGAAG	2 cut(s)	315, 593
Eco88I	CYCGRG	1 cut(s)	572
EcoO109I	RGGNCCY	1 cut(s)	604
EcoRII	CCWGG	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	372
Esp3I	CGTCTC	1 cut(s)	249
FaeI	CATG	1 cut(s)	200
FaiI	YATR	1 cut(s)	198
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	42, 86
FokI	GGATG	4 cut(s)	116, 395, 476, 488
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	2 cut(s)	42, 86
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	2 cut(s)	97, 325
GluI	GCNGC	2 cut(s)	42, 86
GsaI	CCCAGC	1 cut(s)	330
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	370, 605
HapII	CCGG	2 cut(s)	366, 372
HhaI	GCGC	2 cut(s)	98, 326
Hin1II	CATG	1 cut(s)	200
Hin6I	GCGC	2 cut(s)	96, 324
HinP1I	GCGC	2 cut(s)	96, 324
HpaII	CCGG	2 cut(s)	366, 372
HphI	GGTGA	2 cut(s)	118, 434
Hpy166II	GTNNAC	2 cut(s)	185, 559
Hpy188I	TCNGA	2 cut(s)	229, 313
Hpy188III	TCNNGA	2 cut(s)	155, 449
Hpy8I	GTNNAC	2 cut(s)	185, 559
Hpy99I	CGWCG	4 cut(s)	25, 28, 455, 515
HpyAV	CCTTC	2 cut(s)	521, 617
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	3 cut(s)	20, 68, 92
HpyF10VI	GCNNNNNNNGC	7 cut(s)	85, 104, 113, 393, 402, 411, 447
HpyF3I	CTNAG	2 cut(s)	153, 172
HpySE526I	ACGT	3 cut(s)	20, 68, 92
Hsp92II	CATG	1 cut(s)	200
HspAI	GCGC	2 cut(s)	96, 324
Kzo9I	GATC	1 cut(s)	157
LguI	GCTCTTC	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	6 cut(s)	85, 112, 140, 312, 379, 385
Lsp1109I	GCAGC	2 cut(s)	28, 72
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	3 cut(s)	20, 68, 92
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	2 cut(s)	171, 372
MluCI	AATT	1 cut(s)	552
MmeI	TCCRAC	1 cut(s)	246
MspI	CCGG	2 cut(s)	366, 372
MspR9I	CCNGG	3 cut(s)	100, 367, 372
Mva1269I	GAATGC	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	100
MvnI	CGCG	1 cut(s)	450
MwoI	GCNNNNNNNGC	7 cut(s)	85, 104, 113, 393, 402, 411, 447
NciI	CCSGG	2 cut(s)	367, 372
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	200
NlaIV	GGNNCC	3 cut(s)	159, 370, 570
NruI	TCGCGA	1 cut(s)	450
PciSI	GCTCTTC	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	1 cut(s)	516
PctI	GAATGC	1 cut(s)	217
Pfl23II	CGTACG	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	43, 87
Psp6I	CCWGG	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	98
PspLI	CGTACG	1 cut(s)	17
PspN4I	GGNNCC	3 cut(s)	159, 370, 570
PspOMI	GGGCCC	1 cut(s)	368
PspPI	GGNCC	3 cut(s)	368, 369, 604
PsuI	RGATCY	1 cut(s)	157
RruI	TCGCGA	1 cut(s)	450
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
SapI	GCTCTTC	1 cut(s)	114
SatI	GCNGC	2 cut(s)	42, 86
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	3 cut(s)	368, 369, 604
ScrFI	CCNGG	3 cut(s)	100, 367, 372
SduI	GDGCHC	2 cut(s)	171, 372
SetI	ASST	7 cut(s)	23, 67, 71, 81, 95, 306, 537
SfaNI	GCATC	1 cut(s)	94
SpeI	ACTAGT	1 cut(s)	55
Sse9I	AATT	1 cut(s)	552
SsiI	CCGC	1 cut(s)	129
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	3 cut(s)	98, 365, 370
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	3 cut(s)	23, 71, 95
TaqI	TCGA	2 cut(s)	26, 60
TasI	AATT	1 cut(s)	552
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	2 cut(s)	41, 85
TspDTI	ATGAA	4 cut(s)	501, 510, 540, 597
TspRI	CASTG	1 cut(s)	298
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.