RchiOBHm_Chr7g0240371

Phosphopantothenoylcysteine decarboxylase subunit VHS3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004236
Physical Location & Seq
Reverse (-)
66307736 .. 66309650
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21544

Sequence Viewer

Length: 561 bp
ATGGAGACCAAAAAGAGTGGTCATGGTGAGGTTAGGGTTGGAGAGGTCTGGTTGCTGACGTGCGCTTGGGACGTTCTTGCCACTCTGCTTACCTCAGCCTTGCTGTCTTTAGCTCAGAATGCCTCTACTTGTGGACCAAAAAACCGCGGAGCCAATGAGAATGAATATTCCTACTCGGAAGCAGTTGATGGTGATGAAGAAAAGAACAATGATGGTGGCTTTGGGGACCCCGAAGAGGAAGAAGGAGCTGGGAACAATTCTGAAGATGAAGGAGCTGGGAACAATTCTAATGGTAAAAGCAACAACAGTTCCAAAGCTGGGGCTGGAGGCGATGGGGGTGAAGAAGATGAAGAGGAGGACGATATCAACAACCGTGATGATAATGATGATGGCGAAGTAGATGGAGATGAGGACAAGGACGATGATGAAGATGAAGACAACGAGGATGAGGATGAAGGTGAGGACAAGGATGAGGAAGAAATTGTAGAAGAAGATGAACCTGATGATGAAGAAGACGAAGAAGAAGAGGCCCTTCAGCCCCCAAAGAAGCGGAAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.18

Weight (kDa)

4.05

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 147
AciI CCGC 3 cut(s) 145, 147, 550
AcuI CTGAAG 2 cut(s) 282, 518
AfiI CCNNNNNNNGG 2 cut(s) 235, 318
AjiI CACGTC 1 cut(s) 60
AluBI AGCT 4 cut(s) 113, 248, 275, 317
AluI AGCT 4 cut(s) 113, 248, 275, 317
AoxI GGCC 1 cut(s) 528
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 3 cut(s) 134, 226, 529
AsuHPI GGTGA 4 cut(s) 38, 203, 350, 470
AvaII GGWCC 2 cut(s) 134, 226
BbsI GAAGAC 2 cut(s) 441, 519
BbvCI CCTCAGC 1 cut(s) 94
BccI CCATC 5 cut(s) 182, 206, 326, 383, 395
Bme18I GGWCC 2 cut(s) 134, 226
BmgBI CACGTC 1 cut(s) 60
BmgT120I GGNCC 3 cut(s) 134, 226, 529
BmiI GGNNCC 3 cut(s) 151, 227, 228
BpiI GAAGAC 2 cut(s) 441, 519
BpmI CTGGAG 1 cut(s) 345
Bpu10I CCTNAGC 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 145
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 318
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 3 cut(s) 451, 457, 475
BseLI CCNNNNNNNGG 2 cut(s) 235, 318
BseMII CTCAG 2 cut(s) 108, 128
BseRI GAGGAG 1 cut(s) 368
BseYI CCCAGC 3 cut(s) 248, 275, 317
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 1 cut(s) 530
BslFI GGGAC 2 cut(s) 83, 239
BslI CCNNNNNNNGG 2 cut(s) 235, 318
BsmFI GGGAC 2 cut(s) 83, 239
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 1 cut(s) 530
BspACI CCGC 3 cut(s) 145, 147, 550
BspANI GGCC 1 cut(s) 530
BspCNI CTCAG 2 cut(s) 107, 127
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 3 cut(s) 151, 227, 228
BssECI CCNNGG 1 cut(s) 145
Bst4CI ACNGT 2 cut(s) 308, 374
Bst6I CTCTTC 3 cut(s) 228, 345, 519
BstDEI CTNAG 2 cut(s) 94, 114
BstDSI CCRYGG 1 cut(s) 145
BstF5I GGATG 3 cut(s) 451, 457, 475
BstFNI CGCG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 65
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstUI CGCG 1 cut(s) 147
BstV2I GAAGAC 2 cut(s) 441, 519
BsuRI GGCC 1 cut(s) 530
BtgI CCRYGG 1 cut(s) 145
BtgZI GCGATG 1 cut(s) 345
BtrI CACGTC 1 cut(s) 60
BtsCI GGATG 3 cut(s) 451, 457, 475
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 134, 226, 529
Cfr42I CCGCGG 1 cut(s) 148
CspCI CAANNNNNGTGG 3 cut(s) 33, 196, 231
CviAII CATG 1 cut(s) 23
DdeI CTNAG 2 cut(s) 94, 114
Eam1104I CTCTTC 3 cut(s) 228, 345, 519
EarI CTCTTC 3 cut(s) 228, 345, 519
Eco32I GATATC 1 cut(s) 364
Eco47I GGWCC 2 cut(s) 134, 226
Eco57I CTGAAG 2 cut(s) 282, 518
EcoO109I RGGNCCY 2 cut(s) 226, 529
EcoRV GATATC 1 cut(s) 364
FaeI CATG 1 cut(s) 26
FaiI YATR 1 cut(s) 24
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FaqI GGGAC 2 cut(s) 83, 239
FatI CATG 1 cut(s) 22
FokI GGATG 3 cut(s) 458, 464, 482
GlaI GCGC 1 cut(s) 64
GsaI CCCAGC 3 cut(s) 252, 279, 321
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 1 cut(s) 530
HhaI GCGC 1 cut(s) 65
Hin1II CATG 1 cut(s) 26
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HphI GGTGA 4 cut(s) 38, 203, 350, 470
Hpy166II GTNNAC 1 cut(s) 134
Hpy188I TCNGA 3 cut(s) 117, 178, 262
Hpy8I GTNNAC 1 cut(s) 134
HpyAV CCTTC 4 cut(s) 236, 263, 449, 542
HpyCH4III ACNGT 2 cut(s) 308, 374
HpyCH4IV ACGT 2 cut(s) 59, 72
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 2 cut(s) 94, 114
HpySE526I ACGT 2 cut(s) 59, 72
Hsp92II CATG 1 cut(s) 26
HspAI GCGC 1 cut(s) 63
KflI GGGWCCC 1 cut(s) 226
KspI CCGCGG 1 cut(s) 148
LmnI GCTCC 3 cut(s) 149, 245, 272
LpnPI CCDG 6 cut(s) 34, 234, 261, 303, 309, 513
MaeII ACGT 2 cut(s) 59, 72
MluCI AATT 3 cut(s) 256, 283, 480
MmeI TCCRAC 1 cut(s) 19
MspA1I CMGCKG 1 cut(s) 147
Mva1269I GAATGC 1 cut(s) 124
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 119
NlaIII CATG 1 cut(s) 26
NlaIV GGNNCC 3 cut(s) 151, 227, 228
PctI GAATGC 1 cut(s) 124
PpuMI RGGWCCY 1 cut(s) 226
Psp5II RGGWCCY 1 cut(s) 226
PspFI CCCAGC 3 cut(s) 248, 275, 317
PspN4I GGNNCC 3 cut(s) 151, 227, 228
PspPI GGNCC 3 cut(s) 134, 226, 529
PspPPI RGGWCCY 1 cut(s) 226
SacII CCGCGG 1 cut(s) 148
Sau96I GGNCC 3 cut(s) 134, 226, 529
Sfr303I CCGCGG 1 cut(s) 148
SgrBI CCGCGG 1 cut(s) 148
SinI GGWCC 2 cut(s) 134, 226
Sse9I AATT 3 cut(s) 256, 283, 480
SsiI CCGC 3 cut(s) 145, 147, 550
SspI AATATT 1 cut(s) 167
TaaI ACNGT 2 cut(s) 308, 374
TaiI ACGT 2 cut(s) 62, 75
TasI AATT 3 cut(s) 256, 283, 480
TspDTI ATGAA 9 cut(s) 177, 210, 282, 363, 441, 447, 468, 510, 522
VpaK11BI GGWCC 2 cut(s) 134, 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.