Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004236

Physical Location & Seq

Genomic Coordinates Forward (+)

3761425 .. 3763083

Gene Structure 1659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000681

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGATGATAGAACCTTTGTGTCTGGAAATGGAGATGAGGAACCACAGTTTCCCCCATTGGCTAGGCAGGGTTCTAATTACAATCTAACTTTGGATTGTAATGAGGTTCAAAGCAATTTGGGCAATATAAGCAAGCCTTTGAATACAAATATGGCACATTTGGATGAGTTACTTAAAAATGTGATATCAGTTGATCAAGAAGGGCAGCTGCTGCAAAACCCTTCTTCTTCTCCTTCTTCCTCGCTGCCCACTTCACTTTTTCTTGGGAATTTCAATTTGAATGGACCATTAATGAGCAGTAAGAAGAAAACTATGGATCAGGTATGGAAGGAAATTGTTCATCATGATCATGATCATCATCCTCTCAATCTCAATTCCGCTGCAGCCGATGAATCTTTGCATCATCAAAGAATGACAACTATTGGAGAATCAACATCAGCAACAATACCACCTGACCATCTCCTAGTTCGAGCAGGTATCCTAAATGCTCATCCAACGGTGCCCATTGATCCAACAGCTGTGGTATCGCAGCAAGCAGATTGGTTTCAGTTCCAAGTTGTTGCTGCTGCTCAGCAGCAAATGACAATGTTGGACTCGAATTTCAAGGTTTGTGAGTCAGTATTTGAGAACTCTTCATCAGCTATGAATCTTGACACTTACTCTGAGAATCATCAAGTGGGTATGTCAATTCCAATGCCAGCCATATCAGCAGCATCATCTTCAGAGTCTCAGGCAACTCATGCCCAGAGGAAGCGCAATTACTCGGATGAAATGAAGGAGAAAAGTATTGAGAGGAGGCAGAAGAGGATGATAAAAAACAGAGAGTCAGCAGCAAGGTCAAGGGCAAGAAAGCAGGCTTATACCAAGCAGTTGGAGAGTGAAGTATTTCACTTGAGAAAAACAAATACCTGGCTCAAAAAGCAAAAGGAGGTGGAGATACTCTTATCTTCAAATCCTACTAATTCCATGCCTAAACACCAACTTAGGCGCATCAGTTCAGCTTCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

337

Amino Acids

37.63

Weight (kDa)

6.93

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	263 - 308	6.2e-09	Basic region leucine zipper
bZIP_1	PF00170	265 - 308	4.4e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38350 FvH4_5g38350 FvH4_5g38360
malus_domestica	MD08G1174300.v1.1 MD08G1174400.v1.1 MD15G1361000.v1.1
prunus_persica	Prupe.1G508200_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1
pyrus_communis	pycom08g14950 pycom15g32250
rosa_chinensis	RchiOBHm_Chr7g0240371 RchiOBHm_Chr7g0240381
rosa_laevigata	RLG00000000681 RLG00000000682
rosa_multiflora	Rmu_sc0002676.1_g000010
rosa_roxburghii	Rroxscaffold_3G00220160 Rroxscaffold_3G00220180
rosa_rugosa	Rorug07G0335100 Rorug07G0335200 Rorug07G0335300 Rorug07G0335400
rosa_samantha	Rh7AG489500 Rh7AG489600 Rh7BG462500 Rh7BG462600 Rh7CG505800 Rh7CG505900 Rh7DG473500 Rh7DG473600
rosa_wichuraiana	Rw7G040960 Rw7G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	464
AccB1I	GGYRCC	1 cut(s)	499
AciI	CCGC	1 cut(s)	378
AclWI	GGATC	2 cut(s)	324, 503
AcsI	RAATTY	2 cut(s)	268, 598
AcuI	CTGAAG	1 cut(s)	705
AgsI	TTSAA	6 cut(s)	110, 142, 274, 280, 604, 951
AjnI	CCWGG	1 cut(s)	908
AluBI	AGCT	4 cut(s)	208, 518, 641, 1001
AluI	AGCT	4 cut(s)	208, 518, 641, 1001
Alw26I	GTCTC	1 cut(s)	732
AlwI	GGATC	2 cut(s)	324, 503
AlwNI	CAGNNNCTG	1 cut(s)	211
ApoI	RAATTY	2 cut(s)	268, 598
AseI	ATTAAT	1 cut(s)	290
Asp700I	GAANNNNTTC	2 cut(s)	336, 885
AspLEI	GCGC	2 cut(s)	756, 990
AspS9I	GGNCC	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	504
BanI	GGYRCC	1 cut(s)	499
BarI	GAAGNNNNNNTAC	2 cut(s)	743, 775
BccI	CCATC	1 cut(s)	465
BciT130I	CCWGG	1 cut(s)	910
BciVI	GTATCC	1 cut(s)	488
BclI	TGATCA	3 cut(s)	193, 346, 352
BcoDI	GTCTC	1 cut(s)	732
BfaI	CTAG	2 cut(s)	63, 464
BfmI	CTRYAG	1 cut(s)	381
BfuAI	ACCTGC	1 cut(s)	464
BfuI	GTATCC	1 cut(s)	488
BlpI	GCTNAGC	1 cut(s)	570
Bme1390I	CCNGG	1 cut(s)	910
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	2 cut(s)	42, 501
BmrFI	CCNGG	1 cut(s)	910
BmsI	GCATC	3 cut(s)	409, 722, 999
Bpu1102I	GCTNAGC	1 cut(s)	570
BpuEI	CTTGAG	1 cut(s)	913
BsaBI	GATNNNNATC	2 cut(s)	351, 357
Bse8I	GATNNNNATC	2 cut(s)	351, 357
BseBI	CCWGG	1 cut(s)	910
BseGI	GGATG	6 cut(s)	10, 169, 358, 490, 772, 813
BseJI	GATNNNNATC	2 cut(s)	351, 357
BseMII	CTCAG	3 cut(s)	584, 654, 743
BseRI	GAGGAG	1 cut(s)	808
BseSI	GKGCMC	1 cut(s)	504
BshNI	GGYRCC	1 cut(s)	499
BsmAI	GTCTC	1 cut(s)	732
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp143I	GATC	5 cut(s)	193, 316, 346, 352, 508
Bsp1720I	GCTNAGC	1 cut(s)	570
BspACI	CCGC	1 cut(s)	378
BspCNI	CTCAG	3 cut(s)	583, 655, 742
BspHI	TCATGA	2 cut(s)	343, 349
BspLI	GGNNCC	2 cut(s)	42, 501
BspMAI	CTGCAG	1 cut(s)	385
BspMI	ACCTGC	1 cut(s)	464
BspPI	GGATC	2 cut(s)	324, 503
BspT107I	GGYRCC	1 cut(s)	499
BssMI	GATC	5 cut(s)	193, 316, 346, 352, 508
Bst2UI	CCWGG	1 cut(s)	910
Bst4CI	ACNGT	2 cut(s)	48, 499
Bst6I	CTCTTC	2 cut(s)	637, 797
BstAPI	GCANNNNNTGC	2 cut(s)	211, 740
BstC8I	GCNNGC	4 cut(s)	134, 534, 699, 855
BstDEI	CTNAG	4 cut(s)	570, 663, 729, 983
BstF5I	GGATG	6 cut(s)	10, 169, 358, 490, 772, 813
BstHHI	GCGC	2 cut(s)	756, 990
BstKTI	GATC	5 cut(s)	196, 319, 349, 355, 511
BstMAI	GTCTC	1 cut(s)	732
BstMBI	GATC	5 cut(s)	193, 316, 346, 352, 508
BstMWI	GCNNNNNNNGC	6 cut(s)	120, 129, 211, 707, 740, 919
BstNI	CCWGG	1 cut(s)	910
BstSCI	CCNGG	1 cut(s)	908
BstSFI	CTRYAG	1 cut(s)	381
BstSLI	GKGCMC	1 cut(s)	504
BstXI	CCANNNNNNTGG	1 cut(s)	871
BsuI	GTATCC	1 cut(s)	488
BtsCI	GGATG	6 cut(s)	10, 169, 358, 490, 772, 813
BveI	ACCTGC	1 cut(s)	464
Cac8I	GCNNGC	4 cut(s)	134, 534, 699, 855
CaiI	CAGNNNCTG	1 cut(s)	211
CciI	TCATGA	2 cut(s)	343, 349
CfoI	GCGC	2 cut(s)	756, 990
Cfr13I	GGNCC	1 cut(s)	284
CspCI	CAANNNNNGTGG	2 cut(s)	501, 536
CviAII	CATG	4 cut(s)	344, 350, 740, 967
DdeI	CTNAG	4 cut(s)	570, 663, 729, 983
DpnI	GATC	5 cut(s)	195, 318, 348, 354, 510
DpnII	GATC	5 cut(s)	193, 316, 346, 352, 508
Eam1104I	CTCTTC	2 cut(s)	637, 797
EarI	CTCTTC	2 cut(s)	637, 797
Eco32I	GATATC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	705
EcoRII	CCWGG	1 cut(s)	908
EcoRV	GATATC	1 cut(s)	186
FaeI	CATG	4 cut(s)	347, 353, 743, 970
FalI	AAGNNNNNCTT	2 cut(s)	121, 153
FatI	CATG	4 cut(s)	343, 349, 739, 966
FbaI	TGATCA	3 cut(s)	193, 346, 352
FokI	GGATG	6 cut(s)	17, 176, 345, 477, 779, 820
FspBI	CTAG	2 cut(s)	63, 464
GlaI	GCGC	2 cut(s)	755, 989
HhaI	GCGC	2 cut(s)	756, 990
Hin1II	CATG	4 cut(s)	347, 353, 743, 970
Hin6I	GCGC	2 cut(s)	754, 988
HinP1I	GCGC	2 cut(s)	754, 988
HinfI	GANTC	8 cut(s)	392, 428, 593, 614, 646, 667, 725, 824
Hpy188I	TCNGA	3 cut(s)	664, 724, 766
Hpy188III	TCNNGA	5 cut(s)	24, 197, 344, 350, 650
HpyAV	CCTTC	5 cut(s)	194, 231, 243, 322, 769
HpyCH4III	ACNGT	2 cut(s)	48, 499
HpyCH4V	TGCA	3 cut(s)	214, 383, 400
HpyF10VI	GCNNNNNNNGC	6 cut(s)	120, 129, 211, 707, 740, 919
HpyF3I	CTNAG	4 cut(s)	570, 663, 729, 983
Hsp92II	CATG	4 cut(s)	347, 353, 743, 970
HspAI	GCGC	2 cut(s)	754, 988
Ksp22I	TGATCA	3 cut(s)	193, 346, 352
Kzo9I	GATC	5 cut(s)	193, 316, 346, 352, 508
LweI	GCATC	3 cut(s)	409, 722, 999
MaeI	CTAG	2 cut(s)	63, 464
MaeIII	GTNAC	1 cut(s)	168
MalI	GATC	5 cut(s)	195, 318, 348, 354, 510
MboI	GATC	5 cut(s)	193, 316, 346, 352, 508
MboII	GAAGA	8 cut(s)	216, 219, 228, 316, 624, 711, 814, 939
MhlI	GDGCHC	1 cut(s)	504
MlyI	GAGTC	4 cut(s)	587, 623, 734, 833
MmeI	TCCRAC	4 cut(s)	518, 536, 570, 852
MnlI	CCTC	9 cut(s)	31, 97, 250, 372, 741, 786, 789, 798, 922
MroXI	GAANNNNTTC	2 cut(s)	336, 885
MseI	TTAA	2 cut(s)	174, 290
MslI	CAYNNNNRTG	2 cut(s)	162, 348
MspA1I	CMGCKG	3 cut(s)	208, 380, 518
MspR9I	CCNGG	1 cut(s)	910
MvaI	CCWGG	1 cut(s)	910
MwoI	GCNNNNNNNGC	6 cut(s)	120, 129, 211, 707, 740, 919
NdeII	GATC	5 cut(s)	193, 316, 346, 352, 508
NlaIII	CATG	4 cut(s)	347, 353, 743, 970
NlaIV	GGNNCC	2 cut(s)	42, 501
PagI	TCATGA	2 cut(s)	343, 349
PdmI	GAANNNNTTC	2 cut(s)	336, 885
PfeI	GAWTC	4 cut(s)	392, 428, 646, 667
PleI	GAGTC	4 cut(s)	587, 622, 733, 832
PpsI	GAGTC	4 cut(s)	587, 622, 733, 832
PshBI	ATTAAT	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	908
PspGI	CCWGG	1 cut(s)	908
PspN4I	GGNNCC	2 cut(s)	42, 501
PspPI	GGNCC	1 cut(s)	284
PstI	CTGCAG	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	211
PvuII	CAGCTG	2 cut(s)	208, 518
RseI	CAYNNNNRTG	2 cut(s)	162, 348
SaqAI	TTAA	2 cut(s)	174, 290
Sau3AI	GATC	5 cut(s)	193, 316, 346, 352, 508
Sau96I	GGNCC	1 cut(s)	284
SchI	GAGTC	4 cut(s)	587, 623, 734, 833
ScrFI	CCNGG	1 cut(s)	910
SduI	GDGCHC	1 cut(s)	504
SfaNI	GCATC	3 cut(s)	409, 722, 999
SfcI	CTRYAG	1 cut(s)	381
SinI	GGWCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	2 cut(s)	162, 348
SmlI	CTYRAG	1 cut(s)	892
SmoI	CTYRAG	1 cut(s)	892
SsiI	CCGC	1 cut(s)	378
SspMI	CTAG	2 cut(s)	63, 464
StyD4I	CCNGG	1 cut(s)	908
TaaI	ACNGT	2 cut(s)	48, 499
TaqI	TCGA	2 cut(s)	469, 596
TfiI	GAWTC	4 cut(s)	392, 428, 646, 667
Tru1I	TTAA	2 cut(s)	174, 290
Tru9I	TTAA	2 cut(s)	174, 290
TspDTI	ATGAA	6 cut(s)	329, 405, 624, 659, 783, 788
VpaK11BI	GGWCC	1 cut(s)	284
VspI	ATTAAT	1 cut(s)	290
XapI	RAATTY	2 cut(s)	268, 598
XmnI	GAANNNNTTC	2 cut(s)	336, 885
XspI	CTAG	2 cut(s)	63, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.