Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004236

Physical Location & Seq

Genomic Coordinates Forward (+)

41928962 .. 41931443

Gene Structure 2482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G508400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAGACGAAAAGGAGTGGTGGTGGTGGCGAGGTTACGGTTGGCCAGGTCTCGTTGCTATCGTGCGCCTGGGAGGCTCTTGCTACTCTGCTTACGTCAGCCTTGCTTTCTTTGGCCGCTCAAGATCCTTCTGCGCCCTCAACAGCTTCTGGACCAAAAAGTGAAGGAGACAATGAGAGTGAACATTCCAACTACAAAGCAGTGGATGCTGACGAAGATGGAGATGAAGAGAAGAATAATGATGGTGGATTAGGAGAGACCGAAGAGGAGCTATCGTCTGATGACGGGGGAGGCAGTGGGAACAACCCTAATGGCAAAAGCAACAACTCCAAAGCCGAGTCTGGAGGAGATGCCGCTGGAGTAGGCGAAGATGGTGAAGAGGAAGAAGAAGAAGAAGGCAACAACCGTGACGACGACGACGATGGCGATGATGATGGAGATCAAGACAATGAAGATGATGAGGACGAGGAGGAGAATGATGATGATGAAGGTGAAGACAAGGAGGAGGAAGAAATTGTGGAAGAGGATGAACCAGAGGATGAAGAAGAGGATGAGGAAGAGGCCCTTCAGCCCCCAAAGAAGAGGAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

20.87

Weight (kDa)

4.05

Isoelectric Point (pI)

69.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38350 FvH4_5g38350 FvH4_5g38360
malus_domestica	MD08G1174300.v1.1 MD08G1174400.v1.1 MD15G1361000.v1.1
prunus_persica	Prupe.1G508200_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1
pyrus_communis	pycom08g14950 pycom15g32250
rosa_chinensis	RchiOBHm_Chr7g0240371 RchiOBHm_Chr7g0240381
rosa_laevigata	RLG00000000681 RLG00000000682
rosa_multiflora	Rmu_sc0002676.1_g000010
rosa_roxburghii	Rroxscaffold_3G00220160 Rroxscaffold_3G00220180
rosa_rugosa	Rorug07G0335100 Rorug07G0335200 Rorug07G0335300 Rorug07G0335400
rosa_samantha	Rh7AG489500 Rh7AG489600 Rh7BG462500 Rh7BG462600 Rh7CG505800 Rh7CG505900 Rh7DG473500 Rh7DG473600
rosa_wichuraiana	Rw7G040960 Rw7G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	119
AciI	CCGC	2 cut(s)	117, 354
AclWI	GGATC	1 cut(s)	119
AcoI	YGGCCR	2 cut(s)	43, 114
AcuI	CTGAAG	1 cut(s)	551
AjnI	CCWGG	2 cut(s)	45, 68
AluBI	AGCT	2 cut(s)	146, 271
AluI	AGCT	2 cut(s)	146, 271
Alw26I	GTCTC	3 cut(s)	55, 162, 251
AlwI	GGATC	1 cut(s)	119
AlwNI	CAGNNNCTG	1 cut(s)	149
AoxI	GGCC	3 cut(s)	43, 114, 561
AspLEI	GCGC	2 cut(s)	68, 136
AspS9I	GGNCC	2 cut(s)	152, 562
AsuHPI	GGTGA	2 cut(s)	386, 503
AvaII	GGWCC	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	501
BccI	CCATC	5 cut(s)	212, 236, 365, 416, 428
BciT130I	CCWGG	2 cut(s)	47, 70
BcoDI	GTCTC	3 cut(s)	55, 162, 251
BglI	GCCNNNNNGGC	1 cut(s)	74
BisI	GCNGC	2 cut(s)	117, 354
BlsI	GCNGC	2 cut(s)	118, 355
Bme1390I	CCNGG	2 cut(s)	47, 70
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	2 cut(s)	152, 562
BmrFI	CCNGG	2 cut(s)	47, 70
BmsI	GCATC	2 cut(s)	196, 340
BpiI	GAAGAC	1 cut(s)	501
BpmI	CTGGAG	2 cut(s)	363, 378
BpuEI	CTTGAG	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	438
BsaI	GGTCTC	2 cut(s)	55, 251
BsaJI	CCNNGG	1 cut(s)	69
BsaXI	ACNNNNNCTCC	4 cut(s)	7, 37, 260, 290
Bse8I	GATNNNNATC	1 cut(s)	438
BseBI	CCWGG	2 cut(s)	47, 70
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	4 cut(s)	211, 532, 544, 556
BseJI	GATNNNNATC	1 cut(s)	438
BseRI	GAGGAG	5 cut(s)	281, 360, 482, 485, 518
BshFI	GGCC	3 cut(s)	45, 116, 563
BsmAI	GTCTC	3 cut(s)	55, 162, 251
BsnI	GGCC	3 cut(s)	45, 116, 563
Bso31I	GGTCTC	2 cut(s)	55, 251
Bsp143I	GATC	2 cut(s)	124, 439
BspACI	CCGC	2 cut(s)	117, 354
BspANI	GGCC	3 cut(s)	45, 116, 563
BspPI	GGATC	1 cut(s)	119
BspTNI	GGTCTC	2 cut(s)	55, 251
BsrBI	CCGCTC	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	124, 439
Bst2UI	CCWGG	2 cut(s)	47, 70
Bst4CI	ACNGT	2 cut(s)	40, 407
Bst6I	CTCTTC	7 cut(s)	222, 258, 372, 516, 540, 552, 575
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstF5I	GGATG	4 cut(s)	211, 532, 544, 556
BstHHI	GCGC	2 cut(s)	68, 136
BstKTI	GATC	2 cut(s)	127, 442
BstMAI	GTCTC	3 cut(s)	55, 162, 251
BstMBI	GATC	2 cut(s)	124, 439
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 206
BstNI	CCWGG	2 cut(s)	47, 70
BstSCI	CCNGG	2 cut(s)	45, 68
BstV2I	GAAGAC	1 cut(s)	501
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BsuRI	GGCC	3 cut(s)	45, 116, 563
BtgZI	GCGATG	1 cut(s)	441
BtsCI	GGATG	4 cut(s)	211, 532, 544, 556
BtsI	GCAGTG	2 cut(s)	207, 301
BtsIMutI	CAGTG	2 cut(s)	207, 301
CaiI	CAGNNNCTG	1 cut(s)	149
CfoI	GCGC	2 cut(s)	68, 136
Cfr13I	GGNCC	2 cut(s)	152, 562
CviJI	RGCY	9 cut(s)	45, 77, 101, 116, 146, 271, 335, 563, 571
CviKI_1	RGCY	9 cut(s)	45, 77, 101, 116, 146, 271, 335, 563, 571
DpnI	GATC	2 cut(s)	126, 441
DpnII	GATC	2 cut(s)	124, 439
EaeI	YGGCCR	2 cut(s)	43, 114
Eam1104I	CTCTTC	7 cut(s)	222, 258, 372, 516, 540, 552, 575
EarI	CTCTTC	7 cut(s)	222, 258, 372, 516, 540, 552, 575
Eco31I	GGTCTC	2 cut(s)	55, 251
Eco47I	GGWCC	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	551
EcoO109I	RGGNCCY	1 cut(s)	562
EcoRII	CCWGG	2 cut(s)	45, 68
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
Fnu4HI	GCNGC	2 cut(s)	117, 354
FokI	GGATG	4 cut(s)	218, 539, 551, 563
Fsp4HI	GCNGC	2 cut(s)	117, 354
GlaI	GCGC	2 cut(s)	67, 135
GluI	GCNGC	2 cut(s)	117, 354
GsuI	CTGGAG	2 cut(s)	363, 378
HaeIII	GGCC	3 cut(s)	45, 116, 563
HhaI	GCGC	2 cut(s)	68, 136
Hin6I	GCGC	2 cut(s)	66, 134
HinP1I	GCGC	2 cut(s)	66, 134
HinfI	GANTC	1 cut(s)	338
HphI	GGTGA	2 cut(s)	386, 503
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	4 cut(s)	122, 150, 342, 443
Hpy8I	GTNNAC	1 cut(s)	182
Hpy99I	CGWCG	3 cut(s)	416, 419, 422
HpyAV	CCTTC	5 cut(s)	138, 158, 389, 482, 575
HpyCH4III	ACNGT	2 cut(s)	40, 407
HpyCH4IV	ACGT	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 206
HpySE526I	ACGT	1 cut(s)	95
HspAI	GCGC	2 cut(s)	66, 134
Kzo9I	GATC	2 cut(s)	124, 439
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	8 cut(s)	32, 55, 59, 82, 135, 327, 342, 546
LweI	GCATC	2 cut(s)	196, 340
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	2 cut(s)	34, 407
MalI	GATC	2 cut(s)	126, 441
MbiI	CCGCTC	1 cut(s)	119
MboI	GATC	2 cut(s)	124, 439
MflI	RGATCY	1 cut(s)	124
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	1 cut(s)	513
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	213
Mox20I	TGGCCA	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	45
Msp20I	TGGCCA	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	356
MspR9I	CCNGG	2 cut(s)	47, 70
MvaI	CCWGG	2 cut(s)	47, 70
MwoI	GCNNNNNNNGC	2 cut(s)	74, 206
NdeII	GATC	2 cut(s)	124, 439
NmeAIII	GCCGAG	1 cut(s)	361
NmuCI	GTSAC	1 cut(s)	407
PcsI	WCGNNNNNNNCGW	3 cut(s)	59, 417, 423
PkrI	GCNGC	2 cut(s)	118, 355
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Psp6I	CCWGG	2 cut(s)	45, 68
PspGI	CCWGG	2 cut(s)	45, 68
PspPI	GGNCC	2 cut(s)	152, 562
PstNI	CAGNNNCTG	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	124
SatI	GCNGC	2 cut(s)	117, 354
Sau3AI	GATC	2 cut(s)	124, 439
Sau96I	GGNCC	2 cut(s)	152, 562
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	2 cut(s)	47, 70
SetI	ASST	6 cut(s)	36, 51, 98, 148, 273, 493
SfaNI	GCATC	2 cut(s)	196, 340
SinI	GGWCC	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	1 cut(s)	513
SsiI	CCGC	2 cut(s)	117, 354
StyD4I	CCNGG	2 cut(s)	45, 68
TaaI	ACNGT	2 cut(s)	40, 407
TaiI	ACGT	1 cut(s)	98
TaqII	GACCGA	1 cut(s)	275
TasI	AATT	1 cut(s)	513
TauI	GCSGC	2 cut(s)	119, 356
TscAI	CASTG	2 cut(s)	207, 301
TseFI	GTSAC	1 cut(s)	407
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	5 cut(s)	240, 465, 501, 543, 555
TspRI	CASTG	2 cut(s)	207, 301
VpaK11BI	GGWCC	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.